Wall clock time and date at job start Tue Mar 31 2020 05:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.46833 * 2 1 4 4 C 1.38311 * 119.95921 * 270.01895 * 3 2 1 5 5 C 1.38280 * 120.15045 * 179.97438 * 4 3 2 6 6 C 1.38118 * 120.07569 * 359.70658 * 5 4 3 7 7 C 1.38910 * 119.92079 * 0.54284 * 6 5 4 8 8 N 1.39730 * 120.07364 * 179.75238 * 7 6 5 9 9 C 1.34778 * 119.99672 * 326.50131 * 8 7 6 10 10 O 1.21368 * 120.00216 * 354.72396 * 9 8 7 11 11 C 1.49359 * 119.99421 * 174.72833 * 9 8 7 12 12 O 1.21357 * 119.99938 * 0.02562 * 11 9 8 13 13 N 1.34779 * 119.99397 * 179.72229 * 11 9 8 14 14 C 1.46505 * 119.99469 * 180.27337 * 13 11 9 15 15 H 1.08991 * 109.46978 * 325.00057 * 14 13 11 16 16 C 1.53004 * 109.46610 * 85.00384 * 14 13 11 17 17 C 1.50696 * 109.46837 * 204.99992 * 14 13 11 18 18 H 1.08004 * 119.99966 * 0.02562 * 17 14 13 19 19 C 1.37874 * 120.00166 * 180.02562 * 17 14 13 20 20 N 1.31518 * 119.99593 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 120.00271 * 180.02562 * 19 17 14 22 22 H 1.48495 * 109.47450 * 89.99884 * 21 19 17 23 23 H 1.48504 * 109.46966 * 209.99802 * 21 19 17 24 24 H 1.48493 * 109.47093 * 329.99395 * 21 19 17 25 25 C 1.38074 * 119.95933 * 89.99535 * 3 2 1 26 26 H 1.09001 * 109.46849 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47638 * 299.99950 * 1 2 3 28 28 H 1.09006 * 109.46890 * 60.00374 * 1 2 3 29 29 H 1.08996 * 109.47638 * 240.00049 * 2 1 3 30 30 H 1.08998 * 109.46638 * 119.99406 * 2 1 3 31 31 H 1.07994 * 119.93034 * 359.97438 * 4 3 2 32 32 H 1.07995 * 119.95897 * 179.97438 * 5 4 3 33 33 H 1.07999 * 120.03737 * 180.30132 * 6 5 4 34 34 H 0.96992 * 119.99833 * 146.50189 * 8 7 6 35 35 H 0.96996 * 120.00129 * 0.27325 * 13 11 9 36 36 H 1.09004 * 109.46725 * 179.97438 * 16 14 13 37 37 H 1.09001 * 109.46801 * 299.99261 * 16 14 13 38 38 H 1.08999 * 109.47381 * 60.00178 * 16 14 13 39 39 H 0.97004 * 120.00072 * 180.02562 * 20 19 17 40 40 H 1.07998 * 120.04543 * 0.04508 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2621 2.0722 -1.1983 5 6 2.7225 3.3761 -1.2029 6 6 2.9486 4.0346 -0.0100 7 6 2.7238 3.3816 1.1953 8 7 2.9564 4.0430 2.4039 9 6 3.9529 4.9456 2.4972 10 8 4.7081 5.1147 1.5623 11 6 4.1278 5.7379 3.7512 12 8 3.3730 5.5684 4.6862 13 7 5.1278 6.6365 3.8465 14 6 5.3030 7.4093 5.0788 15 1 4.3272 7.6281 5.5122 16 6 6.1337 6.5984 6.0754 17 6 6.0143 8.7003 4.7652 18 1 6.3062 8.9230 3.7495 19 6 6.2924 9.5971 5.7748 20 7 5.9364 9.3260 7.0115 21 14 7.1735 11.1977 5.3859 22 1 6.1737 12.2481 5.0663 23 1 7.9758 11.6195 6.5623 24 1 8.0714 10.9978 4.2203 25 6 2.2620 2.0710 1.1962 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.0817 1.5614 -2.1325 32 1 2.9013 3.8816 -2.1404 33 1 3.3035 5.0546 -0.0144 34 1 2.4008 3.8524 3.1758 35 1 5.7313 6.7716 3.0993 36 1 6.2645 7.1735 6.9921 37 1 5.6192 5.6646 6.3023 38 1 7.1096 6.3796 5.6419 39 1 6.1318 9.9571 7.7219 40 1 2.0827 1.5617 2.1316 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122791514.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:27 Heat of formation + Delta-G solvation = -56.104121 kcal Electronic energy + Delta-G solvation = -22103.389021 eV Core-core repulsion = 18689.685770 eV Total energy + Delta-G solvation = -3413.703250 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.82724 -39.30233 -37.98904 -35.58066 -34.86187 -33.73053 -32.43945 -30.23133 -29.40274 -29.01827 -25.38437 -24.93038 -24.19518 -22.42639 -21.69199 -20.29823 -19.58492 -18.68767 -17.19701 -16.55023 -16.27009 -15.78661 -15.66188 -15.14547 -15.03395 -14.50434 -14.24749 -13.90736 -13.72114 -13.51783 -13.33596 -13.04961 -12.54480 -12.50597 -12.04469 -11.83223 -11.81873 -11.41232 -11.19791 -11.12505 -11.04207 -11.03184 -10.82981 -10.41546 -10.35552 -10.29405 -9.19017 -9.12170 -8.87654 -8.64440 -8.23144 -8.14887 -6.19459 -4.29160 1.05364 1.25719 1.89621 2.65738 3.22754 3.29459 3.32416 3.53447 3.76706 4.05145 4.31848 4.50297 4.65754 4.89096 5.02706 5.06435 5.08583 5.13773 5.19729 5.29960 5.39351 5.43569 5.62433 5.72270 5.85058 5.93947 6.17651 6.23395 6.40342 6.46746 6.69481 6.81898 6.88666 6.99589 7.08580 7.19281 7.38310 7.59670 7.75245 7.89204 8.02693 8.40563 8.58124 8.82331 9.37968 10.86613 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.037607 B = 0.002844 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.362335 B = 9841.381071 C =10349.222011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.065 4.065 4 C -0.136 4.136 5 C -0.097 4.097 6 C -0.126 4.126 7 C 0.154 3.846 8 N -0.652 5.652 9 C 0.508 3.492 10 O -0.504 6.504 11 C 0.495 3.505 12 O -0.535 6.535 13 N -0.667 5.667 14 C 0.261 3.739 15 H 0.054 0.946 16 C -0.149 4.149 17 C -0.537 4.537 18 H 0.065 0.935 19 C 0.067 3.933 20 N -0.883 5.883 21 Si 0.905 3.095 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.272 1.272 25 C -0.143 4.143 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.135 0.865 34 H 0.422 0.578 35 H 0.402 0.598 36 H 0.095 0.905 37 H 0.016 0.984 38 H 0.030 0.970 39 H 0.266 0.734 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.360 -15.671 -13.400 22.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.066 4.066 4 C -0.155 4.155 5 C -0.115 4.115 6 C -0.146 4.146 7 C 0.060 3.940 8 N -0.299 5.299 9 C 0.291 3.709 10 O -0.377 6.377 11 C 0.273 3.727 12 O -0.414 6.414 13 N -0.316 5.316 14 C 0.161 3.839 15 H 0.072 0.928 16 C -0.207 4.207 17 C -0.575 4.575 18 H 0.083 0.917 19 C -0.136 4.136 20 N -0.520 5.520 21 Si 0.732 3.268 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.163 4.163 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.153 0.847 34 H 0.260 0.740 35 H 0.237 0.763 36 H 0.113 0.887 37 H 0.035 0.965 38 H 0.049 0.951 39 H 0.076 0.924 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.293 -15.484 -13.119 21.923 hybrid contribution 0.538 0.871 -0.093 1.028 sum -7.755 -14.613 -13.212 21.171 Atomic orbital electron populations 1.21753 0.94652 1.01667 1.02356 1.20538 0.96207 0.92455 1.02926 1.19641 0.98427 0.96052 0.92491 1.20988 1.01839 0.95259 0.97400 1.21014 0.98201 0.94671 0.97657 1.21203 1.01435 1.01055 0.90909 1.17764 0.99253 0.91430 0.85604 1.43268 1.33564 1.40135 1.12961 1.20975 0.80230 0.80291 0.89427 1.90738 1.42563 1.64841 1.39565 1.19665 0.83584 0.82589 0.86877 1.90730 1.44792 1.66984 1.38877 1.46513 1.28358 1.36604 1.20144 1.18988 0.97599 0.88306 0.79036 0.92774 1.22102 0.98014 0.97859 1.02753 1.21190 1.39304 1.02102 0.94927 0.91731 1.24881 0.95409 0.98550 0.94766 1.69893 1.46043 1.36217 0.99893 0.86383 0.79539 0.82843 0.78004 1.20471 1.20995 1.19717 1.20772 1.04505 0.92487 0.98547 0.92437 0.92435 0.92516 0.90939 0.90973 0.86133 0.85658 0.84700 0.73953 0.76305 0.88679 0.96457 0.95068 0.92427 0.85598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 37.16 0.37 -0.58 16 2 C -0.08 -0.61 6.06 -27.88 -0.17 -0.77 16 3 C -0.07 -0.64 5.13 -104.65 -0.54 -1.17 16 4 C -0.14 -1.32 9.70 -39.54 -0.38 -1.70 16 5 C -0.10 -1.06 10.04 -39.61 -0.40 -1.45 16 6 C -0.13 -1.68 8.65 -39.38 -0.34 -2.02 16 7 C 0.15 2.04 6.27 -83.74 -0.53 1.51 16 8 N -0.65 -9.25 5.32 -10.29 -0.05 -9.30 16 9 C 0.51 8.72 7.62 -11.63 -0.09 8.63 16 10 O -0.50 -9.25 14.17 5.48 0.08 -9.17 16 11 C 0.49 9.90 7.85 -11.63 -0.09 9.81 16 12 O -0.54 -11.77 16.15 5.49 0.09 -11.68 16 13 N -0.67 -14.28 5.06 -55.39 -0.28 -14.56 16 14 C 0.26 6.55 2.56 -69.08 -0.18 6.37 16 15 H 0.05 1.53 7.58 -51.93 -0.39 1.13 16 16 C -0.15 -3.62 9.26 37.16 0.34 -3.27 16 17 C -0.54 -14.12 8.73 -34.44 -0.30 -14.42 16 18 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 19 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 20 N -0.88 -24.37 11.32 55.43 0.63 -23.74 16 21 Si 0.91 20.50 29.54 -169.99 -5.02 15.48 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 C -0.14 -1.57 9.62 -39.38 -0.38 -1.95 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 30 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.14 1.98 6.43 -52.49 -0.34 1.64 16 34 H 0.42 5.32 8.29 -40.82 -0.34 4.98 16 35 H 0.40 8.03 8.01 -40.82 -0.33 7.70 16 36 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 343.05 15.07 5.17 5.17 Total: -1.00 -29.54 343.05 -7.64 -37.18 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -5.47 Total: 9.96 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -2.77 Total: 0.67 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: 0.29 Total: -47.60 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: 0.17 Total: -20.85 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.54 -7.64 -37.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122791514.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.925 kcal (2) G-P(sol) polarization free energy of solvation -29.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds