Wall clock time and date at job start Tue Mar 31 2020 05:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.46833 * 2 1 4 4 C 1.38311 * 119.95921 * 270.01895 * 3 2 1 5 5 C 1.38280 * 120.15045 * 179.97438 * 4 3 2 6 6 C 1.38118 * 120.07569 * 359.70658 * 5 4 3 7 7 C 1.38910 * 119.92079 * 0.54284 * 6 5 4 8 8 N 1.39730 * 120.07364 * 179.75238 * 7 6 5 9 9 C 1.34778 * 119.99672 * 326.50131 * 8 7 6 10 10 O 1.21368 * 120.00216 * 354.72396 * 9 8 7 11 11 C 1.49359 * 119.99421 * 174.72833 * 9 8 7 12 12 O 1.21357 * 119.99938 * 0.02562 * 11 9 8 13 13 N 1.34779 * 119.99397 * 179.72229 * 11 9 8 14 14 C 1.46505 * 119.99469 * 180.27337 * 13 11 9 15 15 H 1.08991 * 109.46978 * 325.00057 * 14 13 11 16 16 C 1.53004 * 109.46610 * 85.00384 * 14 13 11 17 17 C 1.50696 * 109.46837 * 204.99992 * 14 13 11 18 18 H 1.08004 * 119.99966 * 0.02562 * 17 14 13 19 19 C 1.37874 * 120.00166 * 180.02562 * 17 14 13 20 20 N 1.31518 * 119.99593 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 120.00271 * 180.02562 * 19 17 14 22 22 H 1.48495 * 109.47450 * 89.99884 * 21 19 17 23 23 H 1.48504 * 109.46966 * 209.99802 * 21 19 17 24 24 H 1.48493 * 109.47093 * 329.99395 * 21 19 17 25 25 C 1.38074 * 119.95933 * 89.99535 * 3 2 1 26 26 H 1.09001 * 109.46849 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47638 * 299.99950 * 1 2 3 28 28 H 1.09006 * 109.46890 * 60.00374 * 1 2 3 29 29 H 1.08996 * 109.47638 * 240.00049 * 2 1 3 30 30 H 1.08998 * 109.46638 * 119.99406 * 2 1 3 31 31 H 1.07994 * 119.93034 * 359.97438 * 4 3 2 32 32 H 1.07995 * 119.95897 * 179.97438 * 5 4 3 33 33 H 1.07999 * 120.03737 * 180.30132 * 6 5 4 34 34 H 0.96992 * 119.99833 * 146.50189 * 8 7 6 35 35 H 0.96996 * 120.00129 * 0.27325 * 13 11 9 36 36 H 1.09004 * 109.46725 * 179.97438 * 16 14 13 37 37 H 1.09001 * 109.46801 * 299.99261 * 16 14 13 38 38 H 1.08999 * 109.47381 * 60.00178 * 16 14 13 39 39 H 0.97004 * 120.00072 * 180.02562 * 20 19 17 40 40 H 1.07998 * 120.04543 * 0.04508 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2621 2.0722 -1.1983 5 6 2.7225 3.3761 -1.2029 6 6 2.9486 4.0346 -0.0100 7 6 2.7238 3.3816 1.1953 8 7 2.9564 4.0430 2.4039 9 6 3.9529 4.9456 2.4972 10 8 4.7081 5.1147 1.5623 11 6 4.1278 5.7379 3.7512 12 8 3.3730 5.5684 4.6862 13 7 5.1278 6.6365 3.8465 14 6 5.3030 7.4093 5.0788 15 1 4.3272 7.6281 5.5122 16 6 6.1337 6.5984 6.0754 17 6 6.0143 8.7003 4.7652 18 1 6.3062 8.9230 3.7495 19 6 6.2924 9.5971 5.7748 20 7 5.9364 9.3260 7.0115 21 14 7.1735 11.1977 5.3859 22 1 6.1737 12.2481 5.0663 23 1 7.9758 11.6195 6.5623 24 1 8.0714 10.9978 4.2203 25 6 2.2620 2.0710 1.1962 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.0817 1.5614 -2.1325 32 1 2.9013 3.8816 -2.1404 33 1 3.3035 5.0546 -0.0144 34 1 2.4008 3.8524 3.1758 35 1 5.7313 6.7716 3.0993 36 1 6.2645 7.1735 6.9921 37 1 5.6192 5.6646 6.3023 38 1 7.1096 6.3796 5.6419 39 1 6.1318 9.9571 7.7219 40 1 2.0827 1.5617 2.1316 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122791514.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:26 Heat of formation + Delta-G solvation = -74.609766 kcal Electronic energy + Delta-G solvation = -22104.191486 eV Core-core repulsion = 18689.685770 eV Total energy + Delta-G solvation = -3414.505715 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.12568 -40.53105 -39.36702 -37.12058 -36.27494 -34.56774 -34.32775 -31.26341 -31.00137 -30.02921 -27.40264 -26.37330 -24.91988 -23.50865 -22.94794 -21.74466 -20.99916 -20.18018 -18.42496 -18.11011 -17.56718 -17.16975 -16.93374 -16.88610 -16.16528 -15.91550 -15.32976 -15.09365 -14.93285 -14.53923 -14.47040 -14.31169 -14.00842 -13.78338 -13.41049 -13.09796 -12.96519 -12.90959 -12.78058 -12.58069 -12.45011 -12.30741 -12.14225 -11.93306 -11.70559 -11.42551 -11.18856 -10.71473 -10.62002 -10.02223 -9.73547 -9.19342 -8.22009 -6.39455 -0.06572 0.40431 0.62629 1.28260 1.44874 1.45793 1.56517 2.09067 2.37712 2.69865 2.80803 3.08877 3.43390 3.79469 3.94159 4.17934 4.30794 4.38102 4.48450 4.57793 4.59640 4.67521 4.71660 4.86205 4.99114 5.08191 5.09641 5.15267 5.23473 5.27358 5.28461 5.41059 5.44642 5.52249 5.57826 5.67645 5.73814 5.95863 6.01264 6.04886 6.49909 6.62331 6.74309 7.02812 7.32740 8.84243 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.037607 B = 0.002844 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.362335 B = 9841.381071 C =10349.222011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.065 4.065 4 C -0.129 4.129 5 C -0.101 4.101 6 C -0.148 4.148 7 C 0.126 3.874 8 N -0.636 5.636 9 C 0.517 3.483 10 O -0.518 6.518 11 C 0.496 3.504 12 O -0.557 6.557 13 N -0.670 5.670 14 C 0.268 3.732 15 H 0.015 0.985 16 C -0.137 4.137 17 C -0.553 4.553 18 H 0.070 0.930 19 C 0.020 3.980 20 N -0.913 5.913 21 Si 0.972 3.028 22 H -0.276 1.276 23 H -0.281 1.281 24 H -0.264 1.264 25 C -0.142 4.142 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.114 0.886 34 H 0.429 0.571 35 H 0.410 0.590 36 H 0.074 0.926 37 H 0.020 0.980 38 H 0.040 0.960 39 H 0.268 0.732 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.550 -17.095 -15.322 24.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.066 4.066 4 C -0.147 4.147 5 C -0.119 4.119 6 C -0.168 4.168 7 C 0.033 3.967 8 N -0.283 5.283 9 C 0.299 3.701 10 O -0.393 6.393 11 C 0.275 3.725 12 O -0.437 6.437 13 N -0.319 5.319 14 C 0.166 3.834 15 H 0.033 0.967 16 C -0.195 4.195 17 C -0.591 4.591 18 H 0.088 0.912 19 C -0.181 4.181 20 N -0.550 5.550 21 Si 0.797 3.203 22 H -0.202 1.202 23 H -0.206 1.206 24 H -0.188 1.188 25 C -0.162 4.162 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.168 0.832 32 H 0.162 0.838 33 H 0.132 0.868 34 H 0.268 0.732 35 H 0.246 0.754 36 H 0.093 0.907 37 H 0.040 0.960 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.509 -16.948 -15.070 24.223 hybrid contribution 0.488 1.193 0.441 1.362 sum -8.021 -15.755 -14.629 22.947 Atomic orbital electron populations 1.21747 0.94048 1.02516 1.02007 1.20604 0.96587 0.90703 1.04042 1.20028 0.97294 0.97277 0.91981 1.21372 1.00028 0.94644 0.98691 1.21271 0.97787 0.95349 0.97490 1.21212 1.02847 1.00629 0.92154 1.17976 1.01421 0.92542 0.84809 1.43102 1.32378 1.38970 1.13855 1.20226 0.81128 0.80838 0.87873 1.90736 1.43455 1.65656 1.39449 1.20119 0.82532 0.82087 0.87714 1.90709 1.45314 1.67521 1.40107 1.46275 1.29303 1.36934 1.19396 1.18636 0.95492 0.88930 0.80378 0.96675 1.21933 0.98400 0.97471 1.01731 1.21485 1.39495 1.02815 0.95337 0.91170 1.25735 0.96015 1.01810 0.94549 1.70018 1.46855 1.37385 1.00774 0.85334 0.78392 0.78553 0.78026 1.20205 1.20590 1.18807 1.21000 1.03665 0.91551 1.00006 0.91038 0.93180 0.92511 0.89395 0.90382 0.83205 0.83767 0.86774 0.73194 0.75407 0.90706 0.96044 0.94120 0.92265 0.84062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.89 71.98 0.71 -0.75 16 2 C -0.08 -0.91 6.06 29.85 0.18 -0.73 16 3 C -0.07 -1.09 5.13 -19.88 -0.10 -1.20 16 4 C -0.13 -2.12 9.70 22.30 0.22 -1.90 16 5 C -0.10 -2.02 10.04 22.25 0.22 -1.80 16 6 C -0.15 -3.92 8.65 22.40 0.19 -3.73 16 7 C 0.13 3.26 6.27 38.22 0.24 3.50 16 8 N -0.64 -18.03 5.32 -304.83 -1.62 -19.65 16 9 C 0.52 17.97 7.62 87.24 0.66 18.64 16 10 O -0.52 -19.24 14.17 -3.30 -0.05 -19.28 16 11 C 0.50 20.28 7.85 87.24 0.68 20.97 16 12 O -0.56 -25.10 16.15 -3.27 -0.05 -25.16 16 13 N -0.67 -29.27 5.06 -447.52 -2.27 -31.53 16 14 C 0.27 13.78 2.56 44.24 0.11 13.90 16 15 H 0.02 0.90 7.58 -2.39 -0.02 0.88 16 16 C -0.14 -6.78 9.26 71.98 0.67 -6.11 16 17 C -0.55 -29.41 8.73 25.60 0.22 -29.19 16 18 H 0.07 3.57 7.74 -2.91 -0.02 3.54 16 19 C 0.02 1.05 5.30 84.65 0.45 1.50 16 20 N -0.91 -51.15 11.32 21.45 0.24 -50.91 16 21 Si 0.97 41.92 29.54 68.60 2.03 43.94 16 22 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 23 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 25 C -0.14 -2.89 9.62 22.40 0.22 -2.67 16 26 H 0.07 0.53 8.14 -2.39 -0.02 0.52 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.09 0.75 8.08 -2.39 -0.02 0.73 16 30 H 0.08 0.81 8.08 -2.39 -0.02 0.79 16 31 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 32 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 33 H 0.11 3.45 6.43 -2.91 -0.02 3.43 16 34 H 0.43 10.76 8.29 -92.71 -0.77 9.99 16 35 H 0.41 16.59 8.01 -92.71 -0.74 15.85 16 36 H 0.07 4.03 6.07 -2.38 -0.01 4.01 16 37 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 40 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -63.90 343.05 2.52 -61.38 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: -0.44 Total: 30.79 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 4.68 Total: 10.42 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -3.65 Total: -102.09 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: -0.10 Total: -44.44 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Total: -63.90 2.52 -61.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122791514.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.230 kcal (2) G-P(sol) polarization free energy of solvation -63.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds