Wall clock time and date at job start Tue Mar 31 2020 05:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50708 * 109.46614 * 2 1 4 4 C 1.38297 * 119.91796 * 90.00034 * 3 2 1 5 5 C 1.38099 * 120.06921 * 180.02562 * 4 3 2 6 6 C 1.38932 * 119.92467 * 359.97438 * 5 4 3 7 7 N 1.39723 * 120.07337 * 179.97438 * 6 5 4 8 8 C 1.34779 * 120.00078 * 33.01828 * 7 6 5 9 9 O 1.21372 * 120.00211 * 5.30636 * 8 7 6 10 10 C 1.49352 * 119.99913 * 185.30854 * 8 7 6 11 11 O 1.21365 * 120.00212 * 359.97438 * 10 8 7 12 12 N 1.34780 * 120.00330 * 179.97438 * 10 8 7 13 13 C 1.46499 * 120.00264 * 179.97438 * 12 10 8 14 14 H 1.08999 * 109.46937 * 35.00807 * 13 12 10 15 15 C 1.52994 * 109.47220 * 275.00129 * 13 12 10 16 16 C 1.50704 * 109.46711 * 154.99827 * 13 12 10 17 17 H 1.08004 * 120.00244 * 5.69876 * 16 13 12 18 18 C 1.37883 * 119.99877 * 185.69296 * 16 13 12 19 19 N 1.31513 * 120.00024 * 197.41609 * 18 16 13 20 20 Si 1.86803 * 119.99682 * 17.69148 * 18 16 13 21 21 H 1.48501 * 109.46726 * 179.72534 * 20 18 16 22 22 H 1.48504 * 109.46894 * 299.72229 * 20 18 16 23 23 H 1.48493 * 109.46982 * 59.72246 * 20 18 16 24 24 C 1.38925 * 119.84893 * 0.25289 * 6 5 4 25 25 C 1.38099 * 119.92201 * 359.51125 * 24 6 5 26 26 H 1.09006 * 109.47396 * 60.00323 * 1 2 3 27 27 H 1.09001 * 109.46673 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47728 * 299.99671 * 1 2 3 29 29 H 1.08998 * 109.46998 * 240.00466 * 2 1 3 30 30 H 1.08998 * 109.47358 * 120.00023 * 2 1 3 31 31 H 1.07994 * 119.96225 * 0.02562 * 4 3 2 32 32 H 1.08000 * 120.03556 * 179.97438 * 5 4 3 33 33 H 0.97004 * 120.00169 * 213.01855 * 7 6 5 34 34 H 0.96998 * 119.99509 * 359.97438 * 12 10 8 35 35 H 1.08998 * 109.47331 * 175.58249 * 15 13 12 36 36 H 1.09000 * 109.47019 * 295.58227 * 15 13 12 37 37 H 1.08997 * 109.47132 * 55.58373 * 15 13 12 38 38 H 0.97001 * 119.99566 * 355.22392 * 19 18 16 39 39 H 1.07999 * 120.03657 * 179.73021 * 24 6 5 40 40 H 1.07997 * 119.96020 * 180.20871 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2621 2.0713 1.1987 5 6 2.7218 3.3735 1.2023 6 6 2.9539 4.0299 0.0001 7 7 3.4185 5.3477 0.0001 8 6 4.2420 5.7718 0.9791 9 8 4.6570 4.9862 1.8059 10 6 4.6437 7.2087 1.0466 11 8 4.2291 7.9943 0.2197 12 7 5.4668 7.6331 2.0259 13 6 5.8614 9.0424 2.0918 14 1 5.0303 9.6679 1.7660 15 6 7.0659 9.2781 1.1784 16 6 6.2296 9.3951 3.5100 17 1 6.2642 8.6250 4.2664 18 6 6.5224 10.7010 3.8418 19 7 7.1640 10.9678 4.9583 20 14 6.0009 12.0918 2.7090 21 1 6.4258 13.3902 3.2913 22 1 6.6384 11.9131 1.3798 23 1 4.5239 12.0778 2.5555 24 6 2.7173 3.3751 -1.2022 25 6 2.2623 2.0713 -1.1985 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.0819 1.5602 2.1328 32 1 2.9008 3.8810 2.1387 33 1 3.1483 5.9573 -0.7045 34 1 5.7979 7.0053 2.6871 35 1 7.3106 10.3402 1.1665 36 1 7.9202 8.7125 1.5505 37 1 6.8250 8.9494 0.1675 38 1 7.3702 10.2537 5.5817 39 1 2.8925 3.8840 -2.1385 40 1 2.0814 1.5605 -2.1327 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123114004.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:33 Heat of formation + Delta-G solvation = -55.041150 kcal Electronic energy + Delta-G solvation = -22102.752676 eV Core-core repulsion = 18689.095519 eV Total energy + Delta-G solvation = -3413.657156 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.91786 -39.40532 -38.13759 -35.80111 -35.06949 -33.20026 -32.48931 -31.12406 -29.93091 -28.87280 -25.40592 -24.81953 -23.38045 -23.16603 -21.30536 -20.51377 -19.75807 -18.86410 -17.70101 -17.16281 -16.30837 -15.90695 -15.76712 -15.15416 -15.03015 -14.30430 -14.08672 -13.96609 -13.76528 -13.56560 -13.33496 -13.24797 -12.82409 -12.73999 -12.32085 -12.23767 -11.86988 -11.67169 -11.55200 -11.46897 -11.16731 -11.06410 -10.58356 -10.38887 -10.08396 -9.85616 -9.31945 -9.15715 -9.06639 -8.46871 -8.38217 -8.17956 -6.65274 -4.29093 0.96050 1.24630 1.77668 2.55077 3.31886 3.39540 3.42122 3.54316 3.68038 3.95175 4.36047 4.53680 4.59289 4.81690 4.85557 4.91317 5.07472 5.11100 5.21351 5.25651 5.33887 5.44846 5.60229 5.69515 5.84711 5.89165 6.11408 6.13791 6.27317 6.31053 6.39785 6.45695 6.53467 6.78187 6.82110 6.95048 7.14869 7.21394 7.47303 7.76128 8.15012 8.22948 8.44419 8.73364 9.40252 10.76154 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.040276 B = 0.002858 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.042200 B = 9796.157381 C =10118.808893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.102 4.102 4 C -0.097 4.097 5 C -0.118 4.118 6 C 0.145 3.855 7 N -0.651 5.651 8 C 0.508 3.492 9 O -0.502 6.502 10 C 0.495 3.505 11 O -0.537 6.537 12 N -0.661 5.661 13 C 0.239 3.761 14 H 0.046 0.954 15 C -0.164 4.164 16 C -0.622 4.622 17 H 0.065 0.935 18 C 0.040 3.960 19 N -0.893 5.893 20 Si 1.042 2.958 21 H -0.282 1.282 22 H -0.270 1.270 23 H -0.279 1.279 24 C -0.141 4.141 25 C -0.099 4.099 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.125 0.875 32 H 0.136 0.864 33 H 0.422 0.578 34 H 0.407 0.593 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.030 0.970 38 H 0.270 0.730 39 H 0.127 0.873 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.044 -18.585 -12.011 24.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.102 4.102 4 C -0.116 4.116 5 C -0.138 4.138 6 C 0.051 3.949 7 N -0.298 5.298 8 C 0.291 3.709 9 O -0.375 6.375 10 C 0.274 3.726 11 O -0.416 6.416 12 N -0.310 5.310 13 C 0.137 3.863 14 H 0.064 0.936 15 C -0.223 4.223 16 C -0.659 4.659 17 H 0.083 0.917 18 C -0.167 4.167 19 N -0.526 5.526 20 Si 0.870 3.130 21 H -0.207 1.207 22 H -0.196 1.196 23 H -0.205 1.205 24 C -0.161 4.161 25 C -0.117 4.117 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.143 0.857 32 H 0.154 0.846 33 H 0.260 0.740 34 H 0.242 0.758 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.049 0.951 38 H 0.081 0.919 39 H 0.145 0.855 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.883 -16.830 -12.122 23.423 hybrid contribution 0.003 -1.682 0.257 1.702 sum -10.881 -18.512 -11.866 24.533 Atomic orbital electron populations 1.21759 0.94818 1.01576 1.02286 1.20508 0.96076 0.92616 1.02781 1.19890 1.00677 0.96532 0.93127 1.20909 0.98783 0.94156 0.97710 1.21205 0.99357 0.95562 0.97680 1.17776 0.98178 0.84610 0.94382 1.43238 1.46753 1.11075 1.28722 1.20833 0.78634 0.90077 0.81378 1.90752 1.52315 1.55824 1.38610 1.19740 0.81736 0.87241 0.83888 1.90722 1.55526 1.55366 1.39959 1.46248 1.44168 1.13404 1.27149 1.19233 0.93333 0.76381 0.97372 0.93633 1.22540 0.99844 1.02308 0.97565 1.22055 1.54253 0.96688 0.92940 0.91727 1.25707 0.92326 0.99162 0.99494 1.70871 1.32862 1.37386 1.11467 0.84090 0.77253 0.76044 0.75644 1.20745 1.19628 1.20527 1.20896 1.03591 0.95241 0.96410 1.20775 0.99433 0.93868 0.97646 0.92574 0.92520 0.92500 0.91143 0.91074 0.85726 0.84615 0.73956 0.75807 0.91504 0.93109 0.95054 0.91937 0.85486 0.85739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.16 0.37 -0.56 16 2 C -0.08 -0.58 6.06 -27.88 -0.17 -0.75 16 3 C -0.10 -0.96 5.14 -104.58 -0.54 -1.50 16 4 C -0.10 -1.05 9.69 -39.61 -0.38 -1.43 16 5 C -0.12 -1.55 8.66 -39.38 -0.34 -1.89 16 6 C 0.14 1.85 6.28 -83.75 -0.53 1.32 16 7 N -0.65 -8.84 5.32 -10.30 -0.05 -8.90 16 8 C 0.51 8.45 7.62 -11.63 -0.09 8.36 16 9 O -0.50 -9.07 14.14 5.48 0.08 -8.99 16 10 C 0.50 9.51 7.85 -11.63 -0.09 9.42 16 11 O -0.54 -11.09 16.15 5.48 0.09 -11.00 16 12 N -0.66 -13.77 5.06 -55.40 -0.28 -14.06 16 13 C 0.24 5.67 2.14 -69.08 -0.15 5.52 16 14 H 0.05 1.14 6.22 -51.93 -0.32 0.81 16 15 C -0.16 -3.62 9.16 37.15 0.34 -3.28 16 16 C -0.62 -16.70 9.00 -34.44 -0.31 -17.01 16 17 H 0.06 1.83 7.96 -52.48 -0.42 1.41 16 18 C 0.04 1.12 5.34 -17.82 -0.10 1.02 16 19 N -0.89 -26.31 13.70 55.43 0.76 -25.56 16 20 Si 1.04 24.40 26.42 -169.99 -4.49 19.90 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.27 -5.84 5.51 56.52 0.31 -5.53 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 C -0.14 -1.46 9.96 -39.38 -0.39 -1.86 16 25 C -0.10 -0.91 9.69 -39.61 -0.38 -1.30 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 30 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 32 H 0.14 1.97 6.39 -52.49 -0.34 1.63 16 33 H 0.42 4.99 8.29 -40.82 -0.34 4.65 16 34 H 0.41 8.12 7.99 -40.82 -0.33 7.79 16 35 H 0.07 1.48 4.81 -51.93 -0.25 1.23 16 36 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.27 7.91 8.73 -40.82 -0.36 7.56 16 39 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 LS Contribution 338.47 15.07 5.10 5.10 Total: -1.00 -30.51 338.47 -7.01 -37.52 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -5.45 Total: 9.89 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -2.76 Total: -3.92 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 0.42 Total: -48.51 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: 0.17 Total: -19.99 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -4.49 Total: 19.90 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.51 -7.01 -37.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123114004.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.518 kcal (2) G-P(sol) polarization free energy of solvation -30.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds