Wall clock time and date at job start Tue Mar 31 2020 05:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50708 * 109.46614 * 2 1 4 4 C 1.38297 * 119.91796 * 90.00034 * 3 2 1 5 5 C 1.38099 * 120.06921 * 180.02562 * 4 3 2 6 6 C 1.38932 * 119.92467 * 359.97438 * 5 4 3 7 7 N 1.39723 * 120.07337 * 179.97438 * 6 5 4 8 8 C 1.34779 * 120.00078 * 33.01828 * 7 6 5 9 9 O 1.21372 * 120.00211 * 5.30636 * 8 7 6 10 10 C 1.49352 * 119.99913 * 185.30854 * 8 7 6 11 11 O 1.21365 * 120.00212 * 359.97438 * 10 8 7 12 12 N 1.34780 * 120.00330 * 179.97438 * 10 8 7 13 13 C 1.46499 * 120.00264 * 179.97438 * 12 10 8 14 14 H 1.08999 * 109.46937 * 35.00807 * 13 12 10 15 15 C 1.52994 * 109.47220 * 275.00129 * 13 12 10 16 16 C 1.50704 * 109.46711 * 154.99827 * 13 12 10 17 17 H 1.08004 * 120.00244 * 5.69876 * 16 13 12 18 18 C 1.37883 * 119.99877 * 185.69296 * 16 13 12 19 19 N 1.31513 * 120.00024 * 197.41609 * 18 16 13 20 20 Si 1.86803 * 119.99682 * 17.69148 * 18 16 13 21 21 H 1.48501 * 109.46726 * 179.72534 * 20 18 16 22 22 H 1.48504 * 109.46894 * 299.72229 * 20 18 16 23 23 H 1.48493 * 109.46982 * 59.72246 * 20 18 16 24 24 C 1.38925 * 119.84893 * 0.25289 * 6 5 4 25 25 C 1.38099 * 119.92201 * 359.51125 * 24 6 5 26 26 H 1.09006 * 109.47396 * 60.00323 * 1 2 3 27 27 H 1.09001 * 109.46673 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47728 * 299.99671 * 1 2 3 29 29 H 1.08998 * 109.46998 * 240.00466 * 2 1 3 30 30 H 1.08998 * 109.47358 * 120.00023 * 2 1 3 31 31 H 1.07994 * 119.96225 * 0.02562 * 4 3 2 32 32 H 1.08000 * 120.03556 * 179.97438 * 5 4 3 33 33 H 0.97004 * 120.00169 * 213.01855 * 7 6 5 34 34 H 0.96998 * 119.99509 * 359.97438 * 12 10 8 35 35 H 1.08998 * 109.47331 * 175.58249 * 15 13 12 36 36 H 1.09000 * 109.47019 * 295.58227 * 15 13 12 37 37 H 1.08997 * 109.47132 * 55.58373 * 15 13 12 38 38 H 0.97001 * 119.99566 * 355.22392 * 19 18 16 39 39 H 1.07999 * 120.03657 * 179.73021 * 24 6 5 40 40 H 1.07997 * 119.96020 * 180.20871 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2621 2.0713 1.1987 5 6 2.7218 3.3735 1.2023 6 6 2.9539 4.0299 0.0001 7 7 3.4185 5.3477 0.0001 8 6 4.2420 5.7718 0.9791 9 8 4.6570 4.9862 1.8059 10 6 4.6437 7.2087 1.0466 11 8 4.2291 7.9943 0.2197 12 7 5.4668 7.6331 2.0259 13 6 5.8614 9.0424 2.0918 14 1 5.0303 9.6679 1.7660 15 6 7.0659 9.2781 1.1784 16 6 6.2296 9.3951 3.5100 17 1 6.2642 8.6250 4.2664 18 6 6.5224 10.7010 3.8418 19 7 7.1640 10.9678 4.9583 20 14 6.0009 12.0918 2.7090 21 1 6.4258 13.3902 3.2913 22 1 6.6384 11.9131 1.3798 23 1 4.5239 12.0778 2.5555 24 6 2.7173 3.3751 -1.2022 25 6 2.2623 2.0713 -1.1985 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.0819 1.5602 2.1328 32 1 2.9008 3.8810 2.1387 33 1 3.1483 5.9573 -0.7045 34 1 5.7979 7.0053 2.6871 35 1 7.3106 10.3402 1.1665 36 1 7.9202 8.7125 1.5505 37 1 6.8250 8.9494 0.1675 38 1 7.3702 10.2537 5.5817 39 1 2.8925 3.8840 -2.1385 40 1 2.0814 1.5605 -2.1327 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123114004.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:32 Heat of formation + Delta-G solvation = -75.538601 kcal Electronic energy + Delta-G solvation = -22103.641512 eV Core-core repulsion = 18689.095519 eV Total energy + Delta-G solvation = -3414.545993 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.17211 -40.58779 -39.42880 -37.23523 -36.45678 -34.54502 -33.95070 -31.95960 -31.72702 -29.73438 -27.03109 -26.40069 -24.35189 -24.02849 -22.55532 -21.69297 -21.32437 -20.39288 -19.29600 -18.53836 -17.67461 -17.26242 -16.69868 -16.55668 -16.18174 -15.66064 -15.20735 -15.12614 -14.90653 -14.68646 -14.67260 -14.34979 -14.25562 -14.09606 -13.66948 -13.53304 -13.42426 -13.07733 -12.79457 -12.46033 -12.27894 -11.97787 -11.88920 -11.71049 -11.65772 -11.38078 -11.17443 -10.75783 -10.50333 -10.19852 -9.92184 -9.10354 -8.85584 -6.50104 -0.11595 0.41696 0.56830 1.23301 1.46002 1.52892 1.71686 2.02721 2.41925 2.61362 2.78257 2.98331 3.34220 3.87093 3.89588 4.02371 4.26656 4.40836 4.43530 4.44609 4.57979 4.58708 4.64672 4.68399 4.76483 4.97938 5.03810 5.11830 5.13117 5.20719 5.24806 5.30063 5.41280 5.42220 5.43737 5.51527 5.69322 5.89444 5.95598 6.02105 6.39843 6.44594 6.65718 6.90035 7.27334 8.54910 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.040276 B = 0.002858 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.042200 B = 9796.157381 C =10118.808893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.096 4.096 4 C -0.107 4.107 5 C -0.139 4.139 6 C 0.115 3.885 7 N -0.633 5.633 8 C 0.514 3.486 9 O -0.522 6.522 10 C 0.500 3.500 11 O -0.548 6.548 12 N -0.669 5.669 13 C 0.242 3.758 14 H 0.039 0.961 15 C -0.157 4.157 16 C -0.621 4.621 17 H 0.036 0.964 18 C -0.005 4.005 19 N -0.923 5.923 20 Si 1.076 2.924 21 H -0.283 1.283 22 H -0.239 1.239 23 H -0.269 1.269 24 C -0.134 4.134 25 C -0.097 4.097 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.136 0.864 32 H 0.112 0.888 33 H 0.431 0.569 34 H 0.409 0.591 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.048 0.952 38 H 0.257 0.743 39 H 0.151 0.849 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.243 -20.072 -14.975 27.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.096 4.096 4 C -0.125 4.125 5 C -0.159 4.159 6 C 0.022 3.978 7 N -0.280 5.280 8 C 0.296 3.704 9 O -0.397 6.397 10 C 0.280 3.720 11 O -0.428 6.428 12 N -0.319 5.319 13 C 0.138 3.862 14 H 0.057 0.943 15 C -0.216 4.216 16 C -0.659 4.659 17 H 0.054 0.946 18 C -0.206 4.206 19 N -0.558 5.558 20 Si 0.897 3.103 21 H -0.208 1.208 22 H -0.163 1.163 23 H -0.194 1.194 24 C -0.154 4.154 25 C -0.116 4.116 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.154 0.846 32 H 0.130 0.870 33 H 0.271 0.729 34 H 0.244 0.756 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.168 0.832 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -12.110 -18.365 -15.123 26.695 hybrid contribution 0.280 -1.408 1.176 1.856 sum -11.830 -19.773 -13.947 26.934 Atomic orbital electron populations 1.21749 0.94190 1.02424 1.01940 1.20579 0.96486 0.90975 1.03855 1.20256 0.99066 0.97652 0.92660 1.21096 0.98810 0.93462 0.99136 1.21174 1.00960 0.96699 0.97090 1.17988 1.00187 0.84265 0.95363 1.43063 1.45385 1.11854 1.27673 1.20232 0.79398 0.88554 0.82174 1.90755 1.53522 1.55760 1.39669 1.20064 0.80665 0.88415 0.82903 1.90704 1.55669 1.56179 1.40215 1.46097 1.45162 1.12458 1.28137 1.19007 0.93786 0.77868 0.95512 0.94325 1.22423 0.98822 1.02353 0.97979 1.22212 1.53371 0.96090 0.94252 0.94591 1.27009 0.91674 1.01884 1.00046 1.70986 1.35257 1.36965 1.12543 0.83691 0.77766 0.73335 0.75546 1.20820 1.16300 1.19426 1.21187 1.02326 0.95673 0.96240 1.21188 0.98115 0.93416 0.98840 0.92441 0.91128 0.93356 0.89512 0.90646 0.84640 0.86991 0.72948 0.75583 0.91495 0.93210 0.93322 0.93358 0.83180 0.82603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.89 71.98 0.71 -0.73 16 2 C -0.08 -0.90 6.06 29.85 0.18 -0.72 16 3 C -0.10 -1.58 5.14 -19.84 -0.10 -1.68 16 4 C -0.11 -2.21 9.69 22.25 0.22 -1.99 16 5 C -0.14 -3.65 8.66 22.40 0.19 -3.46 16 6 C 0.12 2.82 6.28 38.21 0.24 3.06 16 7 N -0.63 -16.65 5.32 -304.84 -1.62 -18.27 16 8 C 0.51 17.06 7.62 87.24 0.67 17.73 16 9 O -0.52 -19.21 14.14 -3.31 -0.05 -19.26 16 10 C 0.50 18.97 7.85 87.24 0.68 19.66 16 11 O -0.55 -22.01 16.15 -3.29 -0.05 -22.06 16 12 N -0.67 -28.02 5.06 -447.53 -2.27 -30.29 16 13 C 0.24 11.36 2.14 44.24 0.09 11.46 16 14 H 0.04 1.89 6.22 -2.39 -0.01 1.88 16 15 C -0.16 -6.71 9.16 71.98 0.66 -6.05 16 16 C -0.62 -34.00 9.00 25.60 0.23 -33.77 16 17 H 0.04 2.12 7.96 -2.91 -0.02 2.10 16 18 C -0.01 -0.29 5.34 84.66 0.45 0.16 16 19 N -0.92 -55.67 13.70 21.45 0.29 -55.38 16 20 Si 1.08 48.37 26.42 68.60 1.81 50.18 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.24 -9.49 5.51 99.48 0.55 -8.95 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 C -0.13 -2.43 9.96 22.40 0.22 -2.21 16 25 C -0.10 -1.47 9.69 22.25 0.22 -1.26 16 26 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.09 0.71 8.08 -2.39 -0.02 0.69 16 30 H 0.07 0.79 8.08 -2.39 -0.02 0.77 16 31 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 32 H 0.11 3.42 6.39 -2.91 -0.02 3.40 16 33 H 0.43 9.57 8.29 -92.71 -0.77 8.80 16 34 H 0.41 16.74 7.99 -92.71 -0.74 16.00 16 35 H 0.07 2.82 4.81 -2.39 -0.01 2.81 16 36 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.26 15.67 8.73 -92.71 -0.81 14.86 16 39 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 40 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -66.35 338.47 2.15 -64.20 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: -0.63 Total: 30.68 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 4.67 Total: 0.20 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -3.59 Total: -103.94 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -0.10 Total: -41.32 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 1.81 Total: 50.18 kcal Total: -66.35 2.15 -64.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123114004.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.343 kcal (2) G-P(sol) polarization free energy of solvation -66.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds