Wall clock time and date at job start Tue Mar 31 2020 05:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50687 * 109.47303 * 2 1 4 4 C 1.38125 * 120.04071 * 264.97850 * 3 2 1 5 5 C 1.38268 * 120.07633 * 180.02562 * 4 3 2 6 6 C 1.38323 * 120.15509 * 0.02562 * 5 4 3 7 7 C 1.38078 * 120.07299 * 359.69828 * 6 5 4 8 8 C 1.38914 * 120.03759 * 85.00258 * 3 2 1 9 9 N 1.39719 * 120.07722 * 359.95477 * 8 3 2 10 10 C 1.34775 * 120.00341 * 149.15473 * 9 8 3 11 11 O 1.21372 * 119.99694 * 4.45713 * 10 9 8 12 12 C 1.49352 * 119.99887 * 184.45166 * 10 9 8 13 13 O 1.21357 * 120.00553 * 0.02562 * 12 10 9 14 14 N 1.34775 * 119.99887 * 179.97438 * 12 10 9 15 15 C 1.46498 * 120.00172 * 180.02562 * 14 12 10 16 16 H 1.08996 * 109.47030 * 34.99979 * 15 14 12 17 17 C 1.53004 * 109.47129 * 274.99799 * 15 14 12 18 18 C 1.50702 * 109.47349 * 155.00327 * 15 14 12 19 19 H 1.08007 * 119.99844 * 5.57754 * 18 15 14 20 20 C 1.37873 * 120.00240 * 185.58577 * 18 15 14 21 21 N 1.31514 * 120.00217 * 198.65728 * 20 18 15 22 22 Si 1.86802 * 120.00121 * 18.92396 * 20 18 15 23 23 H 1.48498 * 109.47578 * 179.72614 * 22 20 18 24 24 H 1.48500 * 109.47271 * 299.73193 * 22 20 18 25 25 H 1.48503 * 109.47005 * 59.72736 * 22 20 18 26 26 H 1.09000 * 109.47203 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46774 * 300.00300 * 1 2 3 28 28 H 1.08994 * 109.47000 * 59.99548 * 1 2 3 29 29 H 1.09000 * 109.46774 * 239.99700 * 2 1 3 30 30 H 1.09002 * 109.46657 * 120.00600 * 2 1 3 31 31 H 1.07995 * 119.96022 * 0.04538 * 4 3 2 32 32 H 1.07997 * 119.92600 * 179.97438 * 5 4 3 33 33 H 1.07996 * 119.96166 * 179.97438 * 6 5 4 34 34 H 1.07999 * 120.03557 * 180.27424 * 7 6 5 35 35 H 0.97003 * 119.99731 * 329.15611 * 9 8 3 36 36 H 0.97002 * 120.00150 * 0.02562 * 14 12 10 37 37 H 1.08997 * 109.47226 * 295.11385 * 17 15 14 38 38 H 1.09006 * 109.47053 * 55.11315 * 17 15 14 39 39 H 1.08999 * 109.47080 * 175.10632 * 17 15 14 40 40 H 0.97006 * 119.99904 * 355.22639 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3616 2.0377 -1.1911 5 6 2.8231 3.3411 -1.1919 6 6 2.9573 4.0314 -0.0008 7 6 2.6247 3.4226 1.1930 8 6 2.1654 2.1112 1.1980 9 7 1.8330 1.4903 2.4047 10 6 2.4835 1.8252 3.5366 11 8 3.3010 2.7223 3.5239 12 6 2.1983 1.0926 4.8064 13 8 1.3812 0.1954 4.8191 14 7 2.8492 1.4271 5.9382 15 6 2.5700 0.7081 7.1836 16 1 2.3628 -0.3384 6.9604 17 6 1.3548 1.3332 7.8719 18 6 3.7661 0.8000 8.0958 19 1 4.6106 1.4137 7.8188 20 6 3.7825 0.1004 9.2837 21 7 4.6206 0.4434 10.2374 22 14 2.6195 -1.3395 9.5359 23 1 2.8384 -1.9225 10.8840 24 1 1.2159 -0.8680 9.4224 25 1 2.8796 -2.3729 8.5016 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.2581 1.5016 -2.1229 32 1 3.0802 3.8210 -2.1246 33 1 3.3185 5.0492 -0.0050 34 1 2.7255 3.9637 2.1223 35 1 1.1339 0.8182 2.4278 36 1 3.5026 2.1440 5.9281 37 1 1.5925 2.3534 8.1729 38 1 0.5120 1.3454 7.1806 39 1 1.0939 0.7459 8.7523 40 1 5.2741 1.1430 10.0803 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123175430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:37 Heat of formation + Delta-G solvation = -52.083836 kcal Electronic energy + Delta-G solvation = -22674.413547 eV Core-core repulsion = 19260.884629 eV Total energy + Delta-G solvation = -3413.528918 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.04793 -39.40759 -38.05164 -35.58436 -34.88606 -34.01985 -32.50294 -30.26171 -29.85290 -29.28625 -25.33453 -24.75491 -24.05428 -22.69473 -21.10289 -20.61809 -19.75370 -18.81001 -17.65311 -17.14983 -16.41326 -15.93548 -15.80112 -15.39992 -14.73402 -14.43153 -14.08938 -13.88335 -13.82573 -13.66324 -13.29347 -13.18024 -12.78055 -12.42180 -12.27944 -12.08231 -11.96806 -11.85356 -11.55024 -11.34200 -11.16981 -11.02976 -10.58727 -10.49502 -10.09457 -9.87563 -9.28826 -9.17391 -8.89342 -8.47321 -8.36745 -8.23878 -6.66027 -4.29161 0.99006 1.24770 1.78030 2.54548 3.31891 3.39401 3.43200 3.54209 3.68742 3.94466 4.35822 4.50736 4.62183 4.82947 4.93033 4.96768 5.10236 5.10541 5.17025 5.28965 5.37736 5.47799 5.68872 5.71098 5.87210 5.99360 6.12111 6.24360 6.27207 6.34630 6.39234 6.41331 6.53142 6.77846 6.85991 6.94845 7.14519 7.21089 7.47050 7.74849 8.14775 8.22595 8.43766 8.73192 9.39967 10.75440 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027297 B = 0.003561 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.491849 B = 7861.946940 C = 8513.092691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 C -0.107 4.107 4 C -0.101 4.101 5 C -0.135 4.135 6 C -0.106 4.106 7 C -0.124 4.124 8 C 0.148 3.852 9 N -0.648 5.648 10 C 0.507 3.493 11 O -0.501 6.501 12 C 0.495 3.505 13 O -0.537 6.537 14 N -0.660 5.660 15 C 0.240 3.760 16 H 0.046 0.954 17 C -0.163 4.163 18 C -0.623 4.623 19 H 0.065 0.935 20 C 0.041 3.959 21 N -0.892 5.892 22 Si 1.042 2.958 23 H -0.282 1.282 24 H -0.270 1.270 25 H -0.279 1.279 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.146 0.854 35 H 0.422 0.578 36 H 0.407 0.593 37 H 0.050 0.950 38 H 0.030 0.970 39 H 0.065 0.935 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.157 2.908 -21.806 23.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 C -0.110 4.110 4 C -0.119 4.119 5 C -0.154 4.154 6 C -0.125 4.125 7 C -0.144 4.144 8 C 0.053 3.947 9 N -0.294 5.294 10 C 0.290 3.710 11 O -0.375 6.375 12 C 0.274 3.726 13 O -0.416 6.416 14 N -0.309 5.309 15 C 0.137 3.863 16 H 0.063 0.937 17 C -0.221 4.221 18 C -0.661 4.661 19 H 0.083 0.917 20 C -0.166 4.166 21 N -0.525 5.525 22 Si 0.869 3.131 23 H -0.207 1.207 24 H -0.197 1.197 25 H -0.205 1.205 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.163 0.837 35 H 0.260 0.740 36 H 0.242 0.758 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.084 0.916 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.608 1.756 -20.527 21.962 hybrid contribution 0.655 1.266 -1.180 1.851 sum -6.952 3.021 -21.707 22.993 Atomic orbital electron populations 1.21781 0.94511 1.02147 1.02200 1.20535 0.96303 0.92384 1.03456 1.19697 1.02976 0.96302 0.91986 1.20812 0.99331 0.95081 0.96724 1.21122 1.01199 0.94972 0.98112 1.21064 0.99465 1.00015 0.91934 1.21474 1.00042 0.92966 0.99869 1.17659 1.00541 0.92005 0.84469 1.43245 1.38488 1.41941 1.05741 1.20857 0.80867 0.83871 0.85382 1.90710 1.32630 1.28888 1.85268 1.19728 0.83468 0.84715 0.84699 1.90719 1.34435 1.30815 1.85605 1.46248 1.39570 1.36628 1.08469 1.19230 0.95451 0.92048 0.79536 0.93655 1.22521 0.97478 1.01747 1.00374 1.22045 1.03162 1.34121 1.06785 0.91717 1.25696 1.00150 0.99618 0.91142 1.70874 1.19661 1.30894 1.31038 0.84090 0.76114 0.76234 0.76663 1.20719 1.19671 1.20537 0.91910 0.92712 0.92306 0.90463 0.90821 0.85769 0.86060 0.85731 0.83685 0.73981 0.75798 0.93103 0.95068 0.91590 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.82 37.16 0.36 -0.82 16 2 C -0.09 -0.81 5.45 -27.89 -0.15 -0.96 16 3 C -0.11 -1.17 5.15 -104.42 -0.54 -1.70 16 4 C -0.10 -0.96 9.68 -39.61 -0.38 -1.34 16 5 C -0.14 -1.27 10.04 -39.54 -0.40 -1.67 16 6 C -0.11 -1.14 10.04 -39.61 -0.40 -1.54 16 7 C -0.12 -1.63 8.73 -39.37 -0.34 -1.97 16 8 C 0.15 1.93 6.35 -83.75 -0.53 1.40 16 9 N -0.65 -8.99 4.85 -10.30 -0.05 -9.04 16 10 C 0.51 8.47 7.75 -11.63 -0.09 8.38 16 11 O -0.50 -8.97 13.67 5.48 0.07 -8.90 16 12 C 0.50 9.51 7.85 -11.63 -0.09 9.42 16 13 O -0.54 -11.07 16.14 5.49 0.09 -10.98 16 14 N -0.66 -13.74 5.06 -55.40 -0.28 -14.02 16 15 C 0.24 5.67 2.15 -69.08 -0.15 5.52 16 16 H 0.05 1.13 6.21 -51.93 -0.32 0.81 16 17 C -0.16 -3.57 9.16 37.16 0.34 -3.23 16 18 C -0.62 -16.74 8.99 -34.44 -0.31 -17.05 16 19 H 0.06 1.84 7.96 -52.48 -0.42 1.42 16 20 C 0.04 1.14 5.33 -17.82 -0.10 1.05 16 21 N -0.89 -26.25 13.70 55.43 0.76 -25.49 16 22 Si 1.04 24.37 26.46 -169.99 -4.50 19.87 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.27 -5.85 5.57 56.52 0.31 -5.54 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.47 7.34 -51.93 -0.38 0.09 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.58 8.05 -51.93 -0.42 0.16 16 30 H 0.07 0.73 7.37 -51.93 -0.38 0.35 16 31 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.15 2.11 5.92 -52.49 -0.31 1.80 16 35 H 0.42 5.29 6.38 -40.82 -0.26 5.03 16 36 H 0.41 8.10 8.00 -40.82 -0.33 7.77 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 1.46 4.92 -51.93 -0.26 1.20 16 40 H 0.27 7.91 8.73 -40.82 -0.36 7.55 16 LS Contribution 333.76 15.07 5.03 5.03 Total: -1.00 -30.18 333.76 -6.92 -37.10 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -5.27 Total: 10.95 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -2.77 Total: -4.53 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.43 Total: -48.55 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: 0.16 Total: -19.88 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -4.50 Total: 19.87 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.18 -6.92 -37.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123175430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.980 kcal (2) G-P(sol) polarization free energy of solvation -30.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds