Wall clock time and date at job start Tue Mar 31 2020 05:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50687 * 109.47303 * 2 1 4 4 C 1.38125 * 120.04071 * 264.97850 * 3 2 1 5 5 C 1.38268 * 120.07633 * 180.02562 * 4 3 2 6 6 C 1.38323 * 120.15509 * 0.02562 * 5 4 3 7 7 C 1.38078 * 120.07299 * 359.69828 * 6 5 4 8 8 C 1.38914 * 120.03759 * 85.00258 * 3 2 1 9 9 N 1.39719 * 120.07722 * 359.95477 * 8 3 2 10 10 C 1.34775 * 120.00341 * 149.15473 * 9 8 3 11 11 O 1.21372 * 119.99694 * 4.45713 * 10 9 8 12 12 C 1.49352 * 119.99887 * 184.45166 * 10 9 8 13 13 O 1.21357 * 120.00553 * 0.02562 * 12 10 9 14 14 N 1.34775 * 119.99887 * 179.97438 * 12 10 9 15 15 C 1.46498 * 120.00172 * 180.02562 * 14 12 10 16 16 H 1.08996 * 109.47030 * 34.99979 * 15 14 12 17 17 C 1.53004 * 109.47129 * 274.99799 * 15 14 12 18 18 C 1.50702 * 109.47349 * 155.00327 * 15 14 12 19 19 H 1.08007 * 119.99844 * 5.57754 * 18 15 14 20 20 C 1.37873 * 120.00240 * 185.58577 * 18 15 14 21 21 N 1.31514 * 120.00217 * 198.65728 * 20 18 15 22 22 Si 1.86802 * 120.00121 * 18.92396 * 20 18 15 23 23 H 1.48498 * 109.47578 * 179.72614 * 22 20 18 24 24 H 1.48500 * 109.47271 * 299.73193 * 22 20 18 25 25 H 1.48503 * 109.47005 * 59.72736 * 22 20 18 26 26 H 1.09000 * 109.47203 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46774 * 300.00300 * 1 2 3 28 28 H 1.08994 * 109.47000 * 59.99548 * 1 2 3 29 29 H 1.09000 * 109.46774 * 239.99700 * 2 1 3 30 30 H 1.09002 * 109.46657 * 120.00600 * 2 1 3 31 31 H 1.07995 * 119.96022 * 0.04538 * 4 3 2 32 32 H 1.07997 * 119.92600 * 179.97438 * 5 4 3 33 33 H 1.07996 * 119.96166 * 179.97438 * 6 5 4 34 34 H 1.07999 * 120.03557 * 180.27424 * 7 6 5 35 35 H 0.97003 * 119.99731 * 329.15611 * 9 8 3 36 36 H 0.97002 * 120.00150 * 0.02562 * 14 12 10 37 37 H 1.08997 * 109.47226 * 295.11385 * 17 15 14 38 38 H 1.09006 * 109.47053 * 55.11315 * 17 15 14 39 39 H 1.08999 * 109.47080 * 175.10632 * 17 15 14 40 40 H 0.97006 * 119.99904 * 355.22639 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3616 2.0377 -1.1911 5 6 2.8231 3.3411 -1.1919 6 6 2.9573 4.0314 -0.0008 7 6 2.6247 3.4226 1.1930 8 6 2.1654 2.1112 1.1980 9 7 1.8330 1.4903 2.4047 10 6 2.4835 1.8252 3.5366 11 8 3.3010 2.7223 3.5239 12 6 2.1983 1.0926 4.8064 13 8 1.3812 0.1954 4.8191 14 7 2.8492 1.4271 5.9382 15 6 2.5700 0.7081 7.1836 16 1 2.3628 -0.3384 6.9604 17 6 1.3548 1.3332 7.8719 18 6 3.7661 0.8000 8.0958 19 1 4.6106 1.4137 7.8188 20 6 3.7825 0.1004 9.2837 21 7 4.6206 0.4434 10.2374 22 14 2.6195 -1.3395 9.5359 23 1 2.8384 -1.9225 10.8840 24 1 1.2159 -0.8680 9.4224 25 1 2.8796 -2.3729 8.5016 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.2581 1.5016 -2.1229 32 1 3.0802 3.8210 -2.1246 33 1 3.3185 5.0492 -0.0050 34 1 2.7255 3.9637 2.1223 35 1 1.1339 0.8182 2.4278 36 1 3.5026 2.1440 5.9281 37 1 1.5925 2.3534 8.1729 38 1 0.5120 1.3454 7.1806 39 1 1.0939 0.7459 8.7523 40 1 5.2741 1.1430 10.0803 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123175430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:37 Heat of formation + Delta-G solvation = -72.052013 kcal Electronic energy + Delta-G solvation = -22675.279432 eV Core-core repulsion = 19260.884629 eV Total energy + Delta-G solvation = -3414.394803 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.27501 -40.65725 -39.35765 -37.19231 -36.10950 -34.90638 -34.46835 -31.77440 -31.02416 -30.13676 -27.03966 -26.37675 -24.80681 -23.85531 -22.26908 -21.85911 -21.35824 -20.31676 -19.26124 -18.47786 -17.72570 -17.22326 -16.93548 -16.72246 -15.96413 -15.79268 -15.23497 -15.11169 -14.93792 -14.76743 -14.61994 -14.51745 -14.29701 -14.07857 -13.61178 -13.42815 -13.22985 -12.95469 -12.79809 -12.46885 -12.39402 -11.98442 -11.97556 -11.84796 -11.67826 -11.47462 -11.19541 -10.71794 -10.48706 -10.20814 -9.73191 -9.18691 -8.86145 -6.50048 -0.10970 0.41082 0.58623 1.21922 1.45998 1.52680 1.71662 2.01610 2.41659 2.58492 2.81173 2.97639 3.32201 3.75840 3.86821 4.15374 4.28565 4.36764 4.40543 4.42907 4.51806 4.56542 4.63967 4.68007 4.69102 4.97409 5.00231 5.06842 5.10658 5.20021 5.28668 5.34366 5.35985 5.41354 5.50003 5.54105 5.59319 5.90516 5.95758 6.03445 6.37882 6.44076 6.63079 6.88789 7.27121 8.54362 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027297 B = 0.003561 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.491849 B = 7861.946940 C = 8513.092691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.106 4.106 4 C -0.100 4.100 5 C -0.126 4.126 6 C -0.114 4.114 7 C -0.145 4.145 8 C 0.117 3.883 9 N -0.631 5.631 10 C 0.513 3.487 11 O -0.519 6.519 12 C 0.499 3.501 13 O -0.548 6.548 14 N -0.668 5.668 15 C 0.243 3.757 16 H 0.039 0.961 17 C -0.156 4.156 18 C -0.624 4.624 19 H 0.036 0.964 20 C -0.003 4.003 21 N -0.922 5.922 22 Si 1.075 2.925 23 H -0.282 1.282 24 H -0.240 1.240 25 H -0.269 1.269 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.060 0.940 31 H 0.156 0.844 32 H 0.154 0.846 33 H 0.141 0.859 34 H 0.123 0.877 35 H 0.427 0.573 36 H 0.409 0.591 37 H 0.049 0.951 38 H 0.047 0.953 39 H 0.066 0.934 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.694 2.257 -24.770 26.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.109 4.109 4 C -0.118 4.118 5 C -0.144 4.144 6 C -0.132 4.132 7 C -0.165 4.165 8 C 0.023 3.977 9 N -0.277 5.277 10 C 0.295 3.705 11 O -0.394 6.394 12 C 0.279 3.721 13 O -0.428 6.428 14 N -0.317 5.317 15 C 0.139 3.861 16 H 0.057 0.943 17 C -0.214 4.214 18 C -0.662 4.662 19 H 0.054 0.946 20 C -0.205 4.205 21 N -0.556 5.556 22 Si 0.896 3.104 23 H -0.207 1.207 24 H -0.164 1.164 25 H -0.194 1.194 26 H 0.092 0.908 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.116 0.884 30 H 0.078 0.922 31 H 0.174 0.826 32 H 0.171 0.829 33 H 0.159 0.841 34 H 0.141 0.859 35 H 0.267 0.733 36 H 0.244 0.756 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.165 1.122 -23.550 25.295 hybrid contribution 1.182 1.535 -0.445 1.988 sum -7.983 2.657 -23.995 25.427 Atomic orbital electron populations 1.21774 0.93679 1.02849 1.02129 1.20592 0.96974 0.91275 1.03822 1.19973 1.02248 0.97070 0.91578 1.21236 0.98007 0.95262 0.97301 1.21534 0.99313 0.94895 0.98702 1.21319 0.99271 1.00985 0.91668 1.21455 1.01532 0.93409 1.00132 1.17892 1.02726 0.92492 0.84566 1.43079 1.37752 1.41494 1.05394 1.20271 0.81301 0.83699 0.85252 1.90717 1.33689 1.29594 1.85406 1.20053 0.82620 0.84358 0.85069 1.90699 1.34786 1.31313 1.85976 1.46092 1.40382 1.36833 1.08437 1.19006 0.94606 0.92278 0.80217 0.94319 1.22405 0.97092 1.01443 1.00500 1.22203 1.03524 1.32998 1.07435 0.94566 1.26988 1.00997 1.01397 0.91078 1.70989 1.20840 1.31552 1.32236 0.83691 0.76146 0.73761 0.76819 1.20740 1.16429 1.19413 0.90847 0.93839 0.91324 0.88401 0.92161 0.82612 0.82880 0.84091 0.85889 0.73332 0.75557 0.93208 0.93384 0.91573 0.93311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.82 71.98 0.71 -1.30 16 2 C -0.09 -1.40 5.45 29.85 0.16 -1.24 16 3 C -0.11 -2.08 5.15 -19.73 -0.10 -2.19 16 4 C -0.10 -1.53 9.68 22.25 0.22 -1.32 16 5 C -0.13 -1.94 10.04 22.30 0.22 -1.72 16 6 C -0.11 -2.26 10.04 22.25 0.22 -2.04 16 7 C -0.15 -3.80 8.73 22.40 0.20 -3.61 16 8 C 0.12 2.97 6.35 38.22 0.24 3.21 16 9 N -0.63 -17.36 4.85 -304.84 -1.48 -18.84 16 10 C 0.51 17.27 7.75 87.24 0.68 17.94 16 11 O -0.52 -19.03 13.67 -3.32 -0.05 -19.07 16 12 C 0.50 19.13 7.85 87.24 0.68 19.82 16 13 O -0.55 -22.20 16.14 -3.27 -0.05 -22.25 16 14 N -0.67 -28.05 5.06 -447.53 -2.27 -30.31 16 15 C 0.24 11.40 2.15 44.25 0.09 11.50 16 16 H 0.04 1.90 6.21 -2.39 -0.01 1.88 16 17 C -0.16 -6.66 9.16 71.98 0.66 -6.00 16 18 C -0.62 -34.15 8.99 25.60 0.23 -33.92 16 19 H 0.04 2.14 7.96 -2.91 -0.02 2.12 16 20 C 0.00 -0.19 5.33 84.65 0.45 0.26 16 21 N -0.92 -55.52 13.70 21.45 0.29 -55.23 16 22 Si 1.07 48.34 26.46 68.60 1.81 50.15 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 24 H -0.24 -9.57 5.57 99.48 0.55 -9.02 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.04 0.68 7.34 -2.39 -0.02 0.67 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.10 1.14 8.05 -2.39 -0.02 1.12 16 30 H 0.06 1.11 7.37 -2.39 -0.02 1.10 16 31 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 32 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 33 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.12 3.72 5.92 -2.91 -0.02 3.70 16 35 H 0.43 10.53 6.38 -92.71 -0.59 9.93 16 36 H 0.41 16.76 8.00 -92.71 -0.74 16.02 16 37 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 39 H 0.07 2.80 4.92 -2.39 -0.01 2.78 16 40 H 0.26 15.67 8.73 -92.70 -0.81 14.86 16 Total: -1.00 -65.81 333.76 2.49 -63.32 By element: Atomic # 1 Polarization: 33.27 SS G_CDS: -0.44 Total: 32.83 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 4.67 Total: -0.60 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -3.45 Total: -104.38 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -0.10 Total: -41.32 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 1.81 Total: 50.15 kcal Total: -65.81 2.49 -63.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123175430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.727 kcal (2) G-P(sol) polarization free energy of solvation -65.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds