Wall clock time and date at job start Tue Mar 31 2020 06:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47183 * 2 1 4 4 H 1.08999 * 109.47251 * 54.99771 * 3 2 1 5 5 C 1.50695 * 109.47183 * 174.99760 * 3 2 1 6 6 H 1.08001 * 119.99962 * 120.00264 * 5 3 2 7 7 C 1.37876 * 120.00060 * 299.99911 * 5 3 2 8 8 N 1.31513 * 120.00454 * 359.97438 * 7 5 3 9 9 Si 1.86812 * 119.99883 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47035 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46966 * 120.00149 * 9 7 5 12 12 H 1.48497 * 109.46988 * 239.99780 * 9 7 5 13 13 N 1.46498 * 109.47099 * 294.99931 * 3 2 1 14 14 C 1.34779 * 120.00094 * 84.99928 * 13 3 2 15 15 O 1.21357 * 119.99626 * 0.02562 * 14 13 3 16 16 C 1.49347 * 119.99903 * 180.02562 * 14 13 3 17 17 O 1.21377 * 120.00464 * 0.02562 * 16 14 13 18 18 N 1.34778 * 119.99888 * 179.97438 * 16 14 13 19 19 C 1.39726 * 120.00205 * 185.27300 * 18 16 14 20 20 C 1.38949 * 120.07830 * 213.59111 * 19 18 16 21 21 C 1.38077 * 119.92165 * 180.30063 * 20 19 18 22 22 C 1.38323 * 120.07614 * 359.42796 * 21 20 19 23 23 C 1.38270 * 120.15044 * 0.29975 * 22 21 20 24 24 C 1.50700 * 119.96105 * 179.97438 * 23 22 21 25 25 C 1.38120 * 120.07506 * 359.97438 * 23 22 21 26 26 H 1.09004 * 109.46844 * 300.00034 * 1 2 3 27 27 H 1.08990 * 109.47281 * 60.00176 * 1 2 3 28 28 H 1.08994 * 109.47225 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47310 * 239.99723 * 2 1 3 30 30 H 1.09003 * 109.47062 * 119.99674 * 2 1 3 31 31 H 0.96992 * 120.00381 * 179.97438 * 8 7 5 32 32 H 0.96995 * 119.99841 * 265.00237 * 13 3 2 33 33 H 0.97006 * 119.99997 * 5.28741 * 18 16 14 34 34 H 1.07995 * 120.04360 * 0.02562 * 20 19 18 35 35 H 1.08000 * 119.96429 * 179.71050 * 21 20 19 36 36 H 1.08000 * 119.92167 * 180.28016 * 22 21 20 37 37 H 1.08997 * 109.47227 * 90.00129 * 24 23 22 38 38 H 1.09000 * 109.46735 * 210.00268 * 24 23 22 39 39 H 1.08999 * 109.47064 * 329.99649 * 24 23 22 40 40 H 1.08003 * 120.03523 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3375 2.1734 9 14 6.0050 0.8801 1.3812 10 1 6.5988 1.5453 0.1938 11 1 6.4000 1.6158 2.6092 12 1 6.4962 -0.5189 1.4629 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3397 2.6327 -0.4335 16 6 0.0399 3.3316 -2.6433 17 8 0.8147 3.3629 -3.5771 18 7 -1.1776 3.8981 -2.7587 19 6 -1.5898 4.4247 -3.9855 20 6 -2.4107 5.5451 -4.0219 21 6 -2.8211 6.0591 -5.2360 22 6 -2.4064 5.4670 -6.4153 23 6 -1.5849 4.3553 -6.3828 24 6 -1.1361 3.7132 -7.6702 25 6 -1.1752 3.8326 -5.1717 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8292 -0.0609 2.9500 32 1 2.2719 2.1231 -1.9977 33 1 -1.7677 3.9404 -1.9899 34 1 -2.7310 6.0109 -3.1017 35 1 -3.4630 6.9272 -5.2649 36 1 -2.7253 5.8738 -7.3635 37 1 -0.2013 4.1688 -7.9968 38 1 -0.9838 2.6459 -7.5100 39 1 -1.8988 3.8606 -8.4348 40 1 -0.5339 2.9639 -5.1471 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128119467.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:10 Heat of formation + Delta-G solvation = -52.599737 kcal Electronic energy + Delta-G solvation = -22630.748996 eV Core-core repulsion = 19217.197707 eV Total energy + Delta-G solvation = -3413.551289 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.83146 -39.27895 -38.00207 -35.58014 -34.86829 -32.60309 -32.38193 -31.02379 -29.92598 -27.31420 -27.09837 -24.91446 -23.16117 -22.36011 -21.36032 -20.24683 -19.50513 -18.49743 -17.19918 -16.57207 -16.29304 -15.77609 -15.57259 -15.30024 -14.84490 -14.29554 -14.14534 -13.90711 -13.67206 -13.35871 -13.21235 -12.77480 -12.51689 -12.29760 -12.09459 -11.80770 -11.62943 -11.40024 -11.33598 -11.13395 -10.97335 -10.88597 -10.41251 -10.35117 -10.29054 -9.72699 -9.15765 -9.10527 -8.82213 -8.59223 -8.23204 -8.05897 -6.19649 -4.29345 1.04944 1.27143 1.90654 2.67084 3.21441 3.29786 3.33507 3.54485 3.77533 4.05951 4.31556 4.68885 4.74179 5.01902 5.06246 5.12802 5.15741 5.20843 5.42511 5.47952 5.58557 5.74112 5.94119 6.19203 6.21375 6.28978 6.33859 6.34778 6.50190 6.52792 6.88708 6.92232 7.00097 7.11543 7.17727 7.24754 7.47373 7.61406 7.75535 7.89436 8.05699 8.41253 8.59472 8.83553 9.37658 10.85799 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026957 B = 0.003345 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.440825 B = 8367.554339 C = 8728.810042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.267 3.733 4 H 0.055 0.945 5 C -0.537 4.537 6 H 0.065 0.935 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.903 3.097 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.667 5.667 14 C 0.494 3.506 15 O -0.529 6.529 16 C 0.506 3.494 17 O -0.504 6.504 18 N -0.653 5.653 19 C 0.154 3.846 20 C -0.151 4.151 21 C -0.098 4.098 22 C -0.140 4.140 23 C -0.068 4.068 24 C -0.114 4.114 25 C -0.123 4.123 26 H 0.052 0.948 27 H 0.035 0.965 28 H 0.026 0.974 29 H 0.035 0.965 30 H 0.104 0.896 31 H 0.265 0.735 32 H 0.402 0.598 33 H 0.423 0.577 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.153 7.327 -14.179 19.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.083 0.917 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.316 5.316 14 C 0.273 3.727 15 O -0.408 6.408 16 C 0.289 3.711 17 O -0.378 6.378 18 N -0.299 5.299 19 C 0.060 3.940 20 C -0.171 4.171 21 C -0.116 4.116 22 C -0.159 4.159 23 C -0.069 4.069 24 C -0.170 4.170 25 C -0.143 4.143 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.122 0.878 31 H 0.075 0.925 32 H 0.236 0.764 33 H 0.261 0.739 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.047 7.147 -13.911 19.148 hybrid contribution 0.952 0.050 0.230 0.980 sum -10.095 7.197 -13.681 18.463 Atomic orbital electron populations 1.21855 0.98302 0.98445 1.01029 1.21965 0.92647 0.99380 1.02797 1.19030 0.94829 0.89404 0.80083 0.92718 1.21245 0.90301 1.39374 1.06583 0.91700 1.24875 0.98861 0.94589 0.95227 1.69887 1.35202 1.37470 1.09336 0.86354 0.84505 0.77849 0.78212 1.19612 1.20822 1.20785 1.46467 1.13335 1.52528 1.19230 1.19585 0.84544 0.81553 0.87039 1.90743 1.51135 1.59557 1.39332 1.21032 0.81465 0.78775 0.89794 1.90739 1.50475 1.56058 1.40510 1.43276 1.17382 1.57341 1.11935 1.17774 0.97329 0.93628 0.85299 1.20920 1.01836 0.95371 0.98981 1.20898 0.99433 0.99535 0.91748 1.21002 0.99738 0.96874 0.98244 1.19797 0.96565 0.95633 0.94883 1.20791 1.01527 1.00752 0.93962 1.21084 1.01507 1.01208 0.90489 0.92929 0.94642 0.95445 0.94645 0.87818 0.92477 0.76388 0.73920 0.85536 0.85666 0.86082 0.90942 0.91399 0.91532 0.84666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 37.16 0.32 -2.64 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.54 2.24 -69.08 -0.15 6.38 16 4 H 0.06 1.51 7.58 -51.93 -0.39 1.12 16 5 C -0.54 -13.95 8.73 -34.44 -0.30 -14.25 16 6 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.00 11.30 55.43 0.63 -23.38 16 9 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.67 -13.99 5.01 -55.40 -0.28 -14.27 16 14 C 0.49 9.66 6.45 -11.63 -0.08 9.59 16 15 O -0.53 -11.15 13.62 5.49 0.07 -11.08 16 16 C 0.51 8.63 7.62 -11.63 -0.09 8.54 16 17 O -0.50 -9.25 14.16 5.47 0.08 -9.17 16 18 N -0.65 -9.21 5.32 -10.30 -0.05 -9.26 16 19 C 0.15 2.05 6.28 -83.75 -0.53 1.52 16 20 C -0.15 -1.64 9.97 -39.38 -0.39 -2.04 16 21 C -0.10 -0.93 10.04 -39.61 -0.40 -1.33 16 22 C -0.14 -1.37 9.70 -39.54 -0.38 -1.75 16 23 C -0.07 -0.76 5.88 -104.65 -0.62 -1.38 16 24 C -0.11 -1.00 10.01 36.01 0.36 -0.64 16 25 C -0.12 -1.66 8.31 -39.38 -0.33 -1.99 16 26 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 27 H 0.03 0.73 5.65 -51.93 -0.29 0.43 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 31 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.40 7.94 8.01 -40.82 -0.33 7.61 16 33 H 0.42 5.27 8.30 -40.82 -0.34 4.93 16 34 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 39 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 40 H 0.14 2.01 6.41 -52.48 -0.34 1.67 16 LS Contribution 335.30 15.07 5.05 5.05 Total: -1.00 -28.95 335.30 -7.67 -36.62 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -5.32 Total: 11.62 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -2.82 Total: -1.46 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.29 Total: -46.91 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: 0.15 Total: -20.25 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.95 -7.67 -36.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128119467.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.981 kcal (2) G-P(sol) polarization free energy of solvation -28.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds