Wall clock time and date at job start Tue Mar 31 2020 06:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47183 * 2 1 4 4 H 1.08999 * 109.47251 * 54.99771 * 3 2 1 5 5 C 1.50695 * 109.47183 * 174.99760 * 3 2 1 6 6 H 1.08001 * 119.99962 * 120.00264 * 5 3 2 7 7 C 1.37876 * 120.00060 * 299.99911 * 5 3 2 8 8 N 1.31513 * 120.00454 * 359.97438 * 7 5 3 9 9 Si 1.86812 * 119.99883 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47035 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46966 * 120.00149 * 9 7 5 12 12 H 1.48497 * 109.46988 * 239.99780 * 9 7 5 13 13 N 1.46498 * 109.47099 * 294.99931 * 3 2 1 14 14 C 1.34779 * 120.00094 * 84.99928 * 13 3 2 15 15 O 1.21357 * 119.99626 * 0.02562 * 14 13 3 16 16 C 1.49347 * 119.99903 * 180.02562 * 14 13 3 17 17 O 1.21377 * 120.00464 * 0.02562 * 16 14 13 18 18 N 1.34778 * 119.99888 * 179.97438 * 16 14 13 19 19 C 1.39726 * 120.00205 * 185.27300 * 18 16 14 20 20 C 1.38949 * 120.07830 * 213.59111 * 19 18 16 21 21 C 1.38077 * 119.92165 * 180.30063 * 20 19 18 22 22 C 1.38323 * 120.07614 * 359.42796 * 21 20 19 23 23 C 1.38270 * 120.15044 * 0.29975 * 22 21 20 24 24 C 1.50700 * 119.96105 * 179.97438 * 23 22 21 25 25 C 1.38120 * 120.07506 * 359.97438 * 23 22 21 26 26 H 1.09004 * 109.46844 * 300.00034 * 1 2 3 27 27 H 1.08990 * 109.47281 * 60.00176 * 1 2 3 28 28 H 1.08994 * 109.47225 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47310 * 239.99723 * 2 1 3 30 30 H 1.09003 * 109.47062 * 119.99674 * 2 1 3 31 31 H 0.96992 * 120.00381 * 179.97438 * 8 7 5 32 32 H 0.96995 * 119.99841 * 265.00237 * 13 3 2 33 33 H 0.97006 * 119.99997 * 5.28741 * 18 16 14 34 34 H 1.07995 * 120.04360 * 0.02562 * 20 19 18 35 35 H 1.08000 * 119.96429 * 179.71050 * 21 20 19 36 36 H 1.08000 * 119.92167 * 180.28016 * 22 21 20 37 37 H 1.08997 * 109.47227 * 90.00129 * 24 23 22 38 38 H 1.09000 * 109.46735 * 210.00268 * 24 23 22 39 39 H 1.08999 * 109.47064 * 329.99649 * 24 23 22 40 40 H 1.08003 * 120.03523 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3375 2.1734 9 14 6.0050 0.8801 1.3812 10 1 6.5988 1.5453 0.1938 11 1 6.4000 1.6158 2.6092 12 1 6.4962 -0.5189 1.4629 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3397 2.6327 -0.4335 16 6 0.0399 3.3316 -2.6433 17 8 0.8147 3.3629 -3.5771 18 7 -1.1776 3.8981 -2.7587 19 6 -1.5898 4.4247 -3.9855 20 6 -2.4107 5.5451 -4.0219 21 6 -2.8211 6.0591 -5.2360 22 6 -2.4064 5.4670 -6.4153 23 6 -1.5849 4.3553 -6.3828 24 6 -1.1361 3.7132 -7.6702 25 6 -1.1752 3.8326 -5.1717 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8292 -0.0609 2.9500 32 1 2.2719 2.1231 -1.9977 33 1 -1.7677 3.9404 -1.9899 34 1 -2.7310 6.0109 -3.1017 35 1 -3.4630 6.9272 -5.2649 36 1 -2.7253 5.8738 -7.3635 37 1 -0.2013 4.1688 -7.9968 38 1 -0.9838 2.6459 -7.5100 39 1 -1.8988 3.8606 -8.4348 40 1 -0.5339 2.9639 -5.1471 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128119467.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:10 Heat of formation + Delta-G solvation = -70.834755 kcal Electronic energy + Delta-G solvation = -22631.539725 eV Core-core repulsion = 19217.197707 eV Total energy + Delta-G solvation = -3414.342019 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.12762 -40.54872 -39.30790 -37.24840 -36.17103 -34.34680 -33.34526 -32.84463 -30.91682 -29.18887 -27.88646 -26.38988 -24.87963 -23.48224 -22.38690 -21.75311 -21.21107 -19.98563 -18.37692 -18.17829 -17.58382 -17.10137 -17.05004 -16.81867 -16.21284 -15.82464 -15.46545 -15.01534 -14.73000 -14.63033 -14.60542 -14.06287 -13.87438 -13.53635 -13.28969 -13.22411 -13.11518 -12.96645 -12.80411 -12.71313 -12.36008 -12.17369 -12.12485 -12.06907 -11.62339 -11.40753 -11.11437 -10.65951 -10.55219 -9.87071 -9.68847 -9.18165 -8.20157 -6.37220 -0.03799 0.42337 0.65721 1.32113 1.43349 1.46130 1.57361 2.13565 2.38504 2.73368 2.82713 3.09789 3.47405 3.89689 3.99716 4.22606 4.37437 4.43566 4.46469 4.52791 4.55356 4.69172 4.78878 4.82614 4.94492 4.99810 5.17609 5.22322 5.28269 5.30842 5.34167 5.37061 5.50248 5.54674 5.64984 5.68711 5.77469 5.99532 6.06736 6.09491 6.53856 6.65296 6.77497 7.07612 7.34766 8.85285 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026957 B = 0.003345 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.440825 B = 8367.554339 C = 8728.810042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.123 4.123 3 C 0.276 3.724 4 H 0.016 0.984 5 C -0.554 4.554 6 H 0.067 0.933 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.969 3.031 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.277 1.277 13 N -0.670 5.670 14 C 0.496 3.504 15 O -0.545 6.545 16 C 0.514 3.486 17 O -0.521 6.521 18 N -0.636 5.636 19 C 0.124 3.876 20 C -0.150 4.150 21 C -0.094 4.094 22 C -0.134 4.134 23 C -0.078 4.078 24 C -0.113 4.113 25 C -0.147 4.147 26 H 0.036 0.964 27 H 0.039 0.961 28 H 0.049 0.951 29 H 0.040 0.960 30 H 0.080 0.920 31 H 0.267 0.733 32 H 0.408 0.592 33 H 0.429 0.571 34 H 0.146 0.854 35 H 0.160 0.840 36 H 0.152 0.848 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.089 0.911 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.000 8.660 -16.046 21.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C 0.174 3.826 4 H 0.034 0.966 5 C -0.592 4.592 6 H 0.086 0.914 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.794 3.206 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.202 1.202 13 N -0.320 5.320 14 C 0.276 3.724 15 O -0.425 6.425 16 C 0.296 3.704 17 O -0.396 6.396 18 N -0.283 5.283 19 C 0.031 3.969 20 C -0.170 4.170 21 C -0.112 4.112 22 C -0.152 4.152 23 C -0.079 4.079 24 C -0.170 4.170 25 C -0.167 4.167 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.243 0.757 33 H 0.269 0.731 34 H 0.163 0.837 35 H 0.177 0.823 36 H 0.170 0.830 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.935 8.501 -15.804 21.552 hybrid contribution 1.094 -0.286 0.745 1.354 sum -10.841 8.215 -15.060 20.293 Atomic orbital electron populations 1.21709 0.96582 0.99713 1.00381 1.21821 0.94127 0.98542 1.01729 1.18655 0.94131 0.89592 0.80259 0.96648 1.21546 0.91203 1.39526 1.06920 0.91437 1.25684 1.03220 0.94147 0.94859 1.70010 1.36960 1.37978 1.09778 0.85337 0.79171 0.77938 0.78150 1.18971 1.20703 1.20238 1.46244 1.14268 1.53084 1.18376 1.19981 0.83717 0.80868 0.87870 1.90728 1.51465 1.59940 1.40332 1.20361 0.82454 0.79278 0.88288 1.90737 1.51240 1.57158 1.40480 1.43113 1.16175 1.56170 1.12854 1.18025 0.99217 0.95256 0.84448 1.21210 1.00779 0.94366 1.00673 1.21348 0.98907 1.00039 0.90918 1.21423 0.98222 0.95739 0.99838 1.20111 0.96721 0.96266 0.94804 1.20838 1.02392 1.00234 0.93510 1.21094 1.02361 1.01362 0.91869 0.94505 0.94234 0.93173 0.94167 0.90219 0.92335 0.75682 0.73125 0.83663 0.82273 0.83018 0.90650 0.92008 0.89189 0.86943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.42 8.51 71.98 0.61 -4.81 16 2 C -0.12 -5.93 5.45 30.59 0.17 -5.76 16 3 C 0.28 13.92 2.24 44.24 0.10 14.01 16 4 H 0.02 0.91 7.58 -2.39 -0.02 0.89 16 5 C -0.55 -29.30 8.73 25.60 0.22 -29.07 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 1.15 5.29 84.65 0.45 1.60 16 8 N -0.91 -50.53 11.30 21.45 0.24 -50.29 16 9 Si 0.97 41.91 29.54 68.60 2.03 43.93 16 10 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 11 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 12 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 13 N -0.67 -28.86 5.01 -447.55 -2.24 -31.11 16 14 C 0.50 19.81 6.45 87.24 0.56 20.37 16 15 O -0.55 -23.50 13.62 -3.27 -0.04 -23.54 16 16 C 0.51 17.77 7.62 87.24 0.67 18.43 16 17 O -0.52 -19.48 14.16 -3.33 -0.05 -19.53 16 18 N -0.64 -17.88 5.32 -304.84 -1.62 -19.50 16 19 C 0.12 3.20 6.28 38.21 0.24 3.44 16 20 C -0.15 -2.93 9.97 22.40 0.22 -2.71 16 21 C -0.09 -1.45 10.04 22.25 0.22 -1.23 16 22 C -0.13 -2.16 9.70 22.30 0.22 -1.94 16 23 C -0.08 -1.63 5.88 -19.88 -0.12 -1.75 16 24 C -0.11 -1.80 10.01 71.24 0.71 -1.08 16 25 C -0.15 -3.95 8.31 22.40 0.19 -3.76 16 26 H 0.04 1.66 7.85 -2.38 -0.02 1.64 16 27 H 0.04 1.63 5.65 -2.39 -0.01 1.62 16 28 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.08 4.25 5.95 -2.39 -0.01 4.24 16 31 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 32 H 0.41 16.50 8.01 -92.71 -0.74 15.75 16 33 H 0.43 10.57 8.30 -92.70 -0.77 9.80 16 34 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 35 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 36 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.04 8.08 -2.39 -0.02 1.02 16 39 H 0.09 0.98 8.08 -2.39 -0.02 0.96 16 40 H 0.11 3.48 6.41 -2.91 -0.02 3.46 16 Total: -1.00 -63.45 335.30 2.34 -61.11 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: -0.43 Total: 33.19 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 4.46 Total: 5.73 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -3.62 Total: -100.89 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -0.09 Total: -43.07 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Total: -63.45 2.34 -61.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128119467.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.728 kcal (2) G-P(sol) polarization free energy of solvation -63.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds