Wall clock time and date at job start Tue Mar 31 2020 06:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46732 * 2 1 4 4 H 1.08997 * 109.47334 * 304.99993 * 3 2 1 5 5 C 1.50698 * 109.46751 * 185.00160 * 3 2 1 6 6 H 1.08004 * 119.99682 * 240.00068 * 5 3 2 7 7 C 1.37870 * 120.00611 * 60.00531 * 5 3 2 8 8 N 1.31523 * 119.99881 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00701 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47081 * 89.99256 * 9 7 5 11 11 H 1.48497 * 109.47349 * 209.99900 * 9 7 5 12 12 H 1.48498 * 109.46679 * 329.99877 * 9 7 5 13 13 N 1.46501 * 109.46905 * 65.00195 * 3 2 1 14 14 C 1.34770 * 119.99966 * 274.99893 * 13 3 2 15 15 O 1.21366 * 120.00168 * 0.02562 * 14 13 3 16 16 C 1.49354 * 120.00294 * 180.02562 * 14 13 3 17 17 O 1.21376 * 119.99533 * 359.97438 * 16 14 13 18 18 N 1.34770 * 120.00294 * 179.97438 * 16 14 13 19 19 C 1.39725 * 120.00111 * 185.27573 * 18 16 14 20 20 C 1.38948 * 120.07695 * 213.54598 * 19 18 16 21 21 C 1.38081 * 119.92365 * 180.27260 * 20 19 18 22 22 C 1.38310 * 120.07220 * 359.49683 * 21 20 19 23 23 C 1.38272 * 120.15486 * 0.27799 * 22 21 20 24 24 C 1.50704 * 119.96024 * 179.97438 * 23 22 21 25 25 C 1.38114 * 120.07664 * 359.97438 * 23 22 21 26 26 H 1.09000 * 109.47368 * 60.00314 * 1 2 3 27 27 H 1.09003 * 109.46641 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47413 * 299.99294 * 1 2 3 29 29 H 1.09001 * 109.47600 * 240.00578 * 2 1 3 30 30 H 1.09000 * 109.47713 * 120.00105 * 2 1 3 31 31 H 0.96996 * 120.00306 * 180.02562 * 8 7 5 32 32 H 0.96995 * 119.99938 * 94.99694 * 13 3 2 33 33 H 0.97003 * 120.00164 * 5.27679 * 18 16 14 34 34 H 1.07997 * 120.03943 * 0.04653 * 20 19 18 35 35 H 1.07996 * 119.95938 * 179.76885 * 21 20 19 36 36 H 1.07999 * 119.92098 * 180.25148 * 22 21 20 37 37 H 1.09003 * 109.47197 * 89.99816 * 24 23 22 38 38 H 1.09007 * 109.46809 * 209.99439 * 24 23 22 39 39 H 1.09003 * 109.47275 * 329.99291 * 24 23 22 40 40 H 1.08006 * 120.03773 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8787 -1.2280 8 7 3.4062 0.3369 -2.1730 9 14 6.0049 0.8815 -1.3819 10 1 6.5549 -0.3498 -0.7603 11 1 6.3829 0.9228 -2.8174 12 1 6.5568 2.0741 -0.6902 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6643 1.3670 15 8 -0.3403 2.6318 0.4339 16 6 0.0400 3.3325 2.6430 17 8 0.8152 3.3646 3.5764 18 7 -1.1771 3.8997 2.7580 19 6 -1.5064 4.6196 3.9094 20 6 -2.8115 4.6118 4.3860 21 6 -3.1347 5.3289 5.5209 22 6 -2.1587 6.0460 6.1889 23 6 -0.8579 6.0522 5.7200 24 6 0.2019 6.8355 6.4510 25 6 -0.5288 5.3413 4.5825 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8293 -0.0615 -2.9496 32 1 2.2718 2.1231 1.9978 33 1 -1.8245 3.8082 2.0415 34 1 -3.5731 4.0485 3.8674 35 1 -4.1497 5.3263 5.8898 36 1 -2.4133 6.6028 7.0787 37 1 0.6691 6.2002 7.2036 38 1 0.9573 7.1743 5.7418 39 1 -0.2540 7.6986 6.9362 40 1 0.4873 5.3469 4.2165 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128119659.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:12 Heat of formation + Delta-G solvation = -52.585559 kcal Electronic energy + Delta-G solvation = -22619.960356 eV Core-core repulsion = 19206.409682 eV Total energy + Delta-G solvation = -3413.550674 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.83069 -39.27789 -38.00100 -35.57872 -34.86712 -32.60090 -32.38063 -31.02233 -29.92591 -27.31113 -27.09600 -24.91326 -23.16167 -22.35501 -21.36106 -20.24599 -19.50473 -18.49777 -17.20328 -16.57589 -16.26263 -15.80057 -15.60255 -15.17182 -14.93741 -14.34523 -14.07016 -13.90212 -13.74342 -13.31746 -13.18604 -12.76809 -12.51960 -12.30827 -12.09668 -11.80212 -11.61723 -11.40043 -11.32871 -11.14315 -10.99142 -10.86458 -10.41429 -10.35849 -10.28920 -9.72891 -9.16349 -9.10298 -8.82059 -8.59123 -8.23026 -8.05782 -6.19430 -4.29288 1.05017 1.27303 1.90755 2.67121 3.22386 3.29441 3.32407 3.54592 3.77620 4.05876 4.31639 4.69099 4.74307 5.02020 5.06296 5.12887 5.16077 5.20944 5.42749 5.48455 5.58768 5.74648 5.94398 6.19370 6.21532 6.29056 6.33962 6.34838 6.50517 6.52857 6.88861 6.92442 7.00131 7.11544 7.17754 7.24771 7.47487 7.61178 7.75615 7.89475 8.05859 8.41289 8.59334 8.83400 9.37642 10.85953 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025510 B = 0.003471 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.336616 B = 8064.693813 C = 8941.326240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.537 4.537 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.667 5.667 14 C 0.494 3.506 15 O -0.529 6.529 16 C 0.506 3.494 17 O -0.505 6.505 18 N -0.652 5.652 19 C 0.154 3.846 20 C -0.151 4.151 21 C -0.098 4.098 22 C -0.140 4.140 23 C -0.068 4.068 24 C -0.114 4.114 25 C -0.123 4.123 26 H 0.052 0.948 27 H 0.026 0.974 28 H 0.034 0.966 29 H 0.104 0.896 30 H 0.035 0.965 31 H 0.266 0.734 32 H 0.402 0.598 33 H 0.423 0.577 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.379 9.112 13.468 19.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.576 4.576 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.316 5.316 14 C 0.273 3.727 15 O -0.408 6.408 16 C 0.289 3.711 17 O -0.378 6.378 18 N -0.299 5.299 19 C 0.060 3.940 20 C -0.171 4.171 21 C -0.116 4.116 22 C -0.159 4.159 23 C -0.069 4.069 24 C -0.170 4.170 25 C -0.143 4.143 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.122 0.878 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.236 0.764 33 H 0.261 0.739 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.264 8.957 13.184 18.958 hybrid contribution 0.860 -0.177 -0.127 0.887 sum -9.404 8.781 13.056 18.330 Atomic orbital electron populations 1.21856 0.98314 0.98445 1.01014 1.21970 0.92649 0.99383 1.02802 1.19027 0.94805 0.89396 0.80084 0.92711 1.21205 0.90300 1.39481 1.06582 0.91761 1.24873 0.98859 0.94593 0.95214 1.69882 1.35284 1.37371 1.09367 0.86402 0.84497 0.78594 0.77393 1.20443 1.21021 1.19751 1.46464 1.13437 1.52416 1.19239 1.19587 0.84573 0.81529 0.87036 1.90746 1.51196 1.59355 1.39478 1.21031 0.81768 0.78838 0.89428 1.90738 1.50662 1.56679 1.39709 1.43272 1.16466 1.51045 1.19144 1.17774 0.94103 0.93538 0.88622 1.20917 0.95213 1.02769 0.98224 1.20894 0.99319 0.96624 0.94784 1.20999 0.92635 1.01548 1.00676 1.19799 0.94879 0.97136 0.95050 1.20796 0.97087 0.99047 1.00115 1.21091 1.00030 0.96652 0.96505 0.92924 0.95445 0.94648 0.87811 0.94644 0.92423 0.76391 0.73924 0.85550 0.85671 0.86084 0.90946 0.91376 0.91531 0.84641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.51 37.16 0.32 -2.64 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.55 2.24 -69.08 -0.15 6.39 16 4 H 0.06 1.52 7.58 -51.93 -0.39 1.12 16 5 C -0.54 -13.95 8.73 -34.44 -0.30 -14.26 16 6 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.01 11.29 55.43 0.63 -23.39 16 9 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 N -0.67 -13.99 5.01 -55.39 -0.28 -14.27 16 14 C 0.49 9.67 6.46 -11.63 -0.08 9.59 16 15 O -0.53 -11.16 13.62 5.48 0.07 -11.08 16 16 C 0.51 8.63 7.62 -11.63 -0.09 8.54 16 17 O -0.50 -9.25 14.16 5.47 0.08 -9.17 16 18 N -0.65 -9.21 5.32 -10.30 -0.05 -9.26 16 19 C 0.15 2.05 6.28 -83.75 -0.53 1.52 16 20 C -0.15 -1.64 9.97 -39.38 -0.39 -2.03 16 21 C -0.10 -0.93 10.04 -39.61 -0.40 -1.33 16 22 C -0.14 -1.37 9.70 -39.54 -0.38 -1.75 16 23 C -0.07 -0.77 5.88 -104.65 -0.62 -1.38 16 24 C -0.11 -1.01 10.01 36.01 0.36 -0.65 16 25 C -0.12 -1.67 8.31 -39.38 -0.33 -2.00 16 26 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.03 0.73 5.64 -51.93 -0.29 0.43 16 29 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 30 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.40 7.94 8.01 -40.82 -0.33 7.61 16 33 H 0.42 5.27 8.30 -40.82 -0.34 4.93 16 34 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 36 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.60 8.08 -51.92 -0.42 0.18 16 39 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 40 H 0.14 2.03 6.42 -52.48 -0.34 1.69 16 LS Contribution 335.30 15.07 5.05 5.05 Total: -1.00 -28.91 335.30 -7.67 -36.58 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -5.32 Total: 11.70 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -2.82 Total: -1.48 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 0.29 Total: -46.92 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: 0.15 Total: -20.26 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.91 -7.67 -36.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128119659.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.002 kcal (2) G-P(sol) polarization free energy of solvation -28.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds