Wall clock time and date at job start Tue Mar 31 2020 06:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46732 * 2 1 4 4 H 1.08997 * 109.47334 * 304.99993 * 3 2 1 5 5 C 1.50698 * 109.46751 * 185.00160 * 3 2 1 6 6 H 1.08004 * 119.99682 * 240.00068 * 5 3 2 7 7 C 1.37870 * 120.00611 * 60.00531 * 5 3 2 8 8 N 1.31523 * 119.99881 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00701 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47081 * 89.99256 * 9 7 5 11 11 H 1.48497 * 109.47349 * 209.99900 * 9 7 5 12 12 H 1.48498 * 109.46679 * 329.99877 * 9 7 5 13 13 N 1.46501 * 109.46905 * 65.00195 * 3 2 1 14 14 C 1.34770 * 119.99966 * 274.99893 * 13 3 2 15 15 O 1.21366 * 120.00168 * 0.02562 * 14 13 3 16 16 C 1.49354 * 120.00294 * 180.02562 * 14 13 3 17 17 O 1.21376 * 119.99533 * 359.97438 * 16 14 13 18 18 N 1.34770 * 120.00294 * 179.97438 * 16 14 13 19 19 C 1.39725 * 120.00111 * 185.27573 * 18 16 14 20 20 C 1.38948 * 120.07695 * 213.54598 * 19 18 16 21 21 C 1.38081 * 119.92365 * 180.27260 * 20 19 18 22 22 C 1.38310 * 120.07220 * 359.49683 * 21 20 19 23 23 C 1.38272 * 120.15486 * 0.27799 * 22 21 20 24 24 C 1.50704 * 119.96024 * 179.97438 * 23 22 21 25 25 C 1.38114 * 120.07664 * 359.97438 * 23 22 21 26 26 H 1.09000 * 109.47368 * 60.00314 * 1 2 3 27 27 H 1.09003 * 109.46641 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47413 * 299.99294 * 1 2 3 29 29 H 1.09001 * 109.47600 * 240.00578 * 2 1 3 30 30 H 1.09000 * 109.47713 * 120.00105 * 2 1 3 31 31 H 0.96996 * 120.00306 * 180.02562 * 8 7 5 32 32 H 0.96995 * 119.99938 * 94.99694 * 13 3 2 33 33 H 0.97003 * 120.00164 * 5.27679 * 18 16 14 34 34 H 1.07997 * 120.03943 * 0.04653 * 20 19 18 35 35 H 1.07996 * 119.95938 * 179.76885 * 21 20 19 36 36 H 1.07999 * 119.92098 * 180.25148 * 22 21 20 37 37 H 1.09003 * 109.47197 * 89.99816 * 24 23 22 38 38 H 1.09007 * 109.46809 * 209.99439 * 24 23 22 39 39 H 1.09003 * 109.47275 * 329.99291 * 24 23 22 40 40 H 1.08006 * 120.03773 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8787 -1.2280 8 7 3.4062 0.3369 -2.1730 9 14 6.0049 0.8815 -1.3819 10 1 6.5549 -0.3498 -0.7603 11 1 6.3829 0.9228 -2.8174 12 1 6.5568 2.0741 -0.6902 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6643 1.3670 15 8 -0.3403 2.6318 0.4339 16 6 0.0400 3.3325 2.6430 17 8 0.8152 3.3646 3.5764 18 7 -1.1771 3.8997 2.7580 19 6 -1.5064 4.6196 3.9094 20 6 -2.8115 4.6118 4.3860 21 6 -3.1347 5.3289 5.5209 22 6 -2.1587 6.0460 6.1889 23 6 -0.8579 6.0522 5.7200 24 6 0.2019 6.8355 6.4510 25 6 -0.5288 5.3413 4.5825 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8293 -0.0615 -2.9496 32 1 2.2718 2.1231 1.9978 33 1 -1.8245 3.8082 2.0415 34 1 -3.5731 4.0485 3.8674 35 1 -4.1497 5.3263 5.8898 36 1 -2.4133 6.6028 7.0787 37 1 0.6691 6.2002 7.2036 38 1 0.9573 7.1743 5.7418 39 1 -0.2540 7.6986 6.9362 40 1 0.4873 5.3469 4.2165 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128119659.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:11 Heat of formation + Delta-G solvation = -70.809245 kcal Electronic energy + Delta-G solvation = -22620.750594 eV Core-core repulsion = 19206.409682 eV Total energy + Delta-G solvation = -3414.340912 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.12749 -40.54874 -39.30807 -37.24652 -36.17183 -34.34620 -33.34531 -32.84163 -30.91872 -29.18558 -27.88860 -26.38901 -24.87842 -23.47968 -22.38918 -21.75174 -21.21175 -19.98720 -18.38492 -18.17679 -17.49218 -17.30357 -16.89787 -16.82471 -16.16106 -15.98753 -15.30876 -15.13340 -14.70343 -14.62131 -14.56911 -14.05912 -13.90652 -13.52264 -13.29711 -13.21750 -13.09939 -12.98776 -12.81298 -12.68474 -12.36028 -12.17786 -12.12817 -12.07453 -11.62362 -11.40769 -11.12114 -10.65534 -10.55070 -9.86985 -9.68903 -9.18184 -8.19985 -6.37208 -0.03807 0.42288 0.65687 1.32170 1.44574 1.45948 1.56067 2.13570 2.38506 2.73320 2.82746 3.09830 3.47375 3.89595 3.99643 4.22492 4.37409 4.43533 4.46892 4.53338 4.55330 4.69548 4.78599 4.82232 4.94377 5.00063 5.17839 5.22404 5.28206 5.30746 5.34275 5.37261 5.50246 5.54582 5.65020 5.68766 5.77601 5.99540 6.06685 6.09642 6.53932 6.65025 6.77491 7.07546 7.34735 8.85220 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025510 B = 0.003471 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.336616 B = 8064.693813 C = 8941.326240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.123 4.123 3 C 0.276 3.724 4 H 0.015 0.985 5 C -0.555 4.555 6 H 0.068 0.932 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.268 1.268 13 N -0.670 5.670 14 C 0.496 3.504 15 O -0.545 6.545 16 C 0.514 3.486 17 O -0.521 6.521 18 N -0.636 5.636 19 C 0.124 3.876 20 C -0.150 4.150 21 C -0.094 4.094 22 C -0.134 4.134 23 C -0.078 4.078 24 C -0.113 4.113 25 C -0.147 4.147 26 H 0.036 0.964 27 H 0.050 0.950 28 H 0.039 0.961 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.267 0.733 32 H 0.408 0.592 33 H 0.429 0.571 34 H 0.146 0.854 35 H 0.160 0.840 36 H 0.152 0.848 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.518 9.876 15.559 21.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C 0.174 3.826 4 H 0.033 0.967 5 C -0.593 4.593 6 H 0.086 0.914 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.193 1.193 13 N -0.320 5.320 14 C 0.276 3.724 15 O -0.425 6.425 16 C 0.296 3.704 17 O -0.396 6.396 18 N -0.283 5.283 19 C 0.031 3.969 20 C -0.170 4.170 21 C -0.112 4.112 22 C -0.152 4.152 23 C -0.079 4.079 24 C -0.170 4.170 25 C -0.168 4.168 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.243 0.757 33 H 0.269 0.731 34 H 0.164 0.836 35 H 0.178 0.822 36 H 0.170 0.830 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.442 9.748 15.300 21.448 hybrid contribution 1.097 -0.325 -0.715 1.349 sum -10.344 9.422 14.586 20.212 Atomic orbital electron populations 1.21710 0.96531 0.99738 1.00405 1.21825 0.94192 0.98513 1.01715 1.18654 0.94114 0.89598 0.80252 0.96674 1.21519 0.91220 1.39623 1.06941 0.91434 1.25685 1.03232 0.94146 0.94841 1.70009 1.37023 1.37897 1.09795 0.85385 0.79147 0.78794 0.77280 1.19698 1.20864 1.19273 1.46242 1.14362 1.52980 1.18384 1.19984 0.83755 0.80818 0.87885 1.90730 1.51528 1.59747 1.40464 1.20361 0.82796 0.79226 0.88004 1.90737 1.51433 1.57688 1.39762 1.43109 1.15251 1.50058 1.19888 1.18024 0.95395 0.94713 0.88805 1.21211 0.94327 1.02739 0.98674 1.21349 1.00928 0.95167 0.93739 1.21420 0.91751 1.00826 1.01213 1.20107 0.96432 0.96935 0.94436 1.20841 0.96590 0.99655 0.99903 1.21093 0.99190 0.98428 0.98049 0.94502 0.93146 0.94167 0.90222 0.94197 0.92333 0.75682 0.73115 0.83584 0.82227 0.83013 0.90620 0.92093 0.89179 0.87059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.40 8.51 71.98 0.61 -4.79 16 2 C -0.12 -5.94 5.45 30.60 0.17 -5.77 16 3 C 0.28 13.94 2.24 44.25 0.10 14.04 16 4 H 0.02 0.89 7.58 -2.39 -0.02 0.87 16 5 C -0.55 -29.37 8.73 25.60 0.22 -29.15 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 1.16 5.29 84.65 0.45 1.61 16 8 N -0.91 -50.58 11.29 21.45 0.24 -50.34 16 9 Si 0.97 41.90 29.54 68.60 2.03 43.93 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 13 N -0.67 -28.88 5.01 -447.52 -2.24 -31.12 16 14 C 0.50 19.81 6.46 87.24 0.56 20.38 16 15 O -0.55 -23.50 13.62 -3.30 -0.04 -23.55 16 16 C 0.51 17.78 7.62 87.24 0.67 18.44 16 17 O -0.52 -19.50 14.16 -3.33 -0.05 -19.55 16 18 N -0.64 -17.87 5.32 -304.84 -1.62 -19.50 16 19 C 0.12 3.21 6.28 38.21 0.24 3.45 16 20 C -0.15 -2.89 9.97 22.40 0.22 -2.67 16 21 C -0.09 -1.44 10.04 22.25 0.22 -1.21 16 22 C -0.13 -2.16 9.70 22.30 0.22 -1.94 16 23 C -0.08 -1.65 5.88 -19.88 -0.12 -1.76 16 24 C -0.11 -1.83 10.01 71.24 0.71 -1.12 16 25 C -0.15 -4.00 8.31 22.40 0.19 -3.82 16 26 H 0.04 1.66 7.85 -2.39 -0.02 1.64 16 27 H 0.05 1.88 8.14 -2.39 -0.02 1.87 16 28 H 0.04 1.65 5.64 -2.39 -0.01 1.63 16 29 H 0.08 4.25 5.95 -2.39 -0.01 4.23 16 30 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 32 H 0.41 16.50 8.01 -92.71 -0.74 15.76 16 33 H 0.43 10.55 8.30 -92.71 -0.77 9.78 16 34 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 36 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.06 1.05 8.08 -2.38 -0.02 1.04 16 39 H 0.09 1.01 8.09 -2.39 -0.02 0.99 16 40 H 0.11 3.50 6.42 -2.91 -0.02 3.48 16 Total: -1.00 -63.51 335.30 2.34 -61.17 By element: Atomic # 1 Polarization: 33.72 SS G_CDS: -0.43 Total: 33.29 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 4.46 Total: 5.67 kcal Atomic # 7 Polarization: -97.34 SS G_CDS: -3.62 Total: -100.96 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -0.09 Total: -43.10 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -63.51 2.34 -61.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128119659.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.634 kcal (2) G-P(sol) polarization free energy of solvation -63.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds