Wall clock time and date at job start Tue Mar 31 2020 06:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46606 * 2 1 4 4 H 1.09002 * 109.47432 * 55.00439 * 3 2 1 5 5 C 1.50705 * 109.46862 * 175.00084 * 3 2 1 6 6 H 1.07999 * 119.99824 * 120.00161 * 5 3 2 7 7 C 1.37877 * 120.00124 * 299.99832 * 5 3 2 8 8 N 1.31517 * 119.99875 * 0.02562 * 7 5 3 9 9 Si 1.86790 * 120.00129 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47193 * 90.00337 * 9 7 5 11 11 H 1.48502 * 109.47358 * 210.00556 * 9 7 5 12 12 H 1.48506 * 109.47213 * 330.00338 * 9 7 5 13 13 N 1.46499 * 109.47492 * 295.00081 * 3 2 1 14 14 C 1.34780 * 120.00123 * 85.00161 * 13 3 2 15 15 O 1.21353 * 119.99783 * 0.02562 * 14 13 3 16 16 C 1.49351 * 119.99929 * 180.02562 * 14 13 3 17 17 O 1.21373 * 119.99846 * 359.97438 * 16 14 13 18 18 N 1.34777 * 119.99618 * 179.97438 * 16 14 13 19 19 C 1.39725 * 119.99659 * 174.48058 * 18 16 14 20 20 C 1.38959 * 120.07482 * 335.14400 * 19 18 16 21 21 C 1.38075 * 119.91827 * 179.77280 * 20 19 18 22 22 C 1.38310 * 120.07940 * 0.50716 * 21 20 19 23 23 C 1.38279 * 120.15400 * 359.74977 * 22 21 20 24 24 C 1.38122 * 120.07134 * 359.97438 * 23 22 21 25 25 C 1.50700 * 120.03320 * 179.97438 * 24 23 22 26 26 H 1.09005 * 109.46663 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47274 * 299.99796 * 1 2 3 28 28 H 1.08999 * 109.47205 * 60.00068 * 1 2 3 29 29 H 1.08994 * 109.46705 * 240.00240 * 2 1 3 30 30 H 1.08999 * 109.47205 * 119.99932 * 2 1 3 31 31 H 0.96995 * 120.00061 * 180.02562 * 8 7 5 32 32 H 0.97004 * 120.00079 * 265.00261 * 13 3 2 33 33 H 0.96998 * 120.00199 * 354.48112 * 18 16 14 34 34 H 1.08001 * 120.03727 * 0.02562 * 20 19 18 35 35 H 1.07997 * 119.95775 * 180.25517 * 21 20 19 36 36 H 1.07997 * 119.92618 * 179.76615 * 22 21 20 37 37 H 1.07995 * 119.96336 * 179.97438 * 23 22 21 38 38 H 1.08997 * 109.47144 * 270.02107 * 25 24 23 39 39 H 1.09002 * 109.47212 * 30.02956 * 25 24 23 40 40 H 1.09005 * 109.46431 * 150.02581 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8785 1.2279 8 7 3.4063 0.3367 2.1729 9 14 6.0049 0.8802 1.3811 10 1 6.4427 2.1131 2.0836 11 1 6.4391 -0.3109 2.1544 12 1 6.6131 0.8397 0.0268 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3399 2.6326 -0.4335 16 6 0.0397 3.3317 -2.6433 17 8 0.8148 3.3639 -3.5766 18 7 -1.1779 3.8981 -2.7585 19 6 -1.5058 4.6216 -3.9080 20 6 -0.5030 5.2008 -4.6760 21 6 -0.8304 5.9110 -5.8139 22 6 -2.1552 6.0552 -6.1839 23 6 -3.1560 5.4846 -5.4191 24 6 -2.8353 4.7679 -4.2827 25 6 -3.9267 4.1469 -3.4495 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8293 -0.0610 2.9498 32 1 2.2718 2.1233 -1.9978 33 1 -1.8265 3.8035 -2.0435 34 1 0.5315 5.0921 -4.3853 35 1 -0.0512 6.3580 -6.4135 36 1 -2.4087 6.6144 -7.0724 37 1 -4.1895 5.5994 -5.7107 38 1 -4.2521 4.8570 -2.6893 39 1 -4.7701 3.8882 -4.0899 40 1 -3.5473 3.2463 -2.9668 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128198578.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:13 Heat of formation + Delta-G solvation = -48.726991 kcal Electronic energy + Delta-G solvation = -22814.183043 eV Core-core repulsion = 19400.799689 eV Total energy + Delta-G solvation = -3413.383354 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.95042 -39.29423 -37.98428 -35.55161 -34.77586 -32.75366 -32.40651 -31.03093 -29.94661 -27.37967 -27.00235 -24.85642 -23.20233 -22.37602 -21.32191 -20.22806 -19.51477 -18.62117 -17.43986 -16.57991 -16.03581 -15.81739 -15.56624 -15.21520 -14.81080 -14.38169 -14.08026 -14.04999 -13.72839 -13.37344 -13.17251 -12.77176 -12.60369 -12.30909 -12.10910 -11.73608 -11.62009 -11.38962 -11.33821 -11.11576 -10.94004 -10.89137 -10.54741 -10.37216 -10.29026 -9.72555 -9.17426 -9.09442 -8.81790 -8.58962 -8.14389 -8.05708 -6.19858 -4.29679 1.04499 1.29207 1.92215 2.65140 3.22359 3.29310 3.32109 3.54693 3.79513 4.04648 4.31233 4.66612 4.72077 4.96424 5.06230 5.11096 5.12666 5.30722 5.41990 5.42411 5.57302 5.76568 5.98292 6.15217 6.28346 6.28592 6.33184 6.38123 6.46642 6.52024 6.91009 6.92627 6.99336 7.10608 7.17190 7.24065 7.46496 7.60584 7.74739 7.86819 8.05284 8.40145 8.58429 8.82636 9.37249 10.85549 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028277 B = 0.003535 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.952577 B = 7919.449466 C = 8678.590440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.538 4.538 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.272 1.272 13 N -0.666 5.666 14 C 0.494 3.506 15 O -0.529 6.529 16 C 0.505 3.495 17 O -0.503 6.503 18 N -0.647 5.647 19 C 0.151 3.849 20 C -0.129 4.129 21 C -0.104 4.104 22 C -0.139 4.139 23 C -0.101 4.101 24 C -0.117 4.117 25 C -0.118 4.118 26 H 0.027 0.973 27 H 0.052 0.948 28 H 0.034 0.966 29 H 0.035 0.965 30 H 0.104 0.896 31 H 0.266 0.734 32 H 0.402 0.598 33 H 0.422 0.578 34 H 0.147 0.853 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.774 8.079 -12.268 18.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.576 4.576 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.315 5.315 14 C 0.273 3.727 15 O -0.408 6.408 16 C 0.289 3.711 17 O -0.377 6.377 18 N -0.293 5.293 19 C 0.056 3.944 20 C -0.149 4.149 21 C -0.123 4.123 22 C -0.158 4.158 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.174 4.174 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.122 0.878 31 H 0.076 0.924 32 H 0.236 0.764 33 H 0.261 0.739 34 H 0.164 0.836 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.666 7.905 -11.973 18.492 hybrid contribution 0.940 -0.062 0.045 0.943 sum -10.726 7.843 -11.928 17.856 Atomic orbital electron populations 1.21860 0.98323 0.98451 1.01001 1.21966 0.92639 0.99375 1.02814 1.19029 0.94820 0.89399 0.80068 0.92711 1.21206 0.90291 1.39483 1.06607 0.91751 1.24872 0.98869 0.94557 0.95241 1.69880 1.35305 1.37390 1.09321 0.86401 0.84467 0.77687 0.78321 1.20489 1.21011 1.19713 1.46471 1.13411 1.52375 1.19259 1.19581 0.84600 0.81547 0.87017 1.90742 1.51233 1.59354 1.39441 1.21043 0.81756 0.78868 0.89467 1.90691 1.50888 1.56452 1.39634 1.43291 1.16271 1.50427 1.19324 1.17692 0.93213 0.94697 0.88839 1.21466 1.00400 0.97203 0.95785 1.21045 0.96402 0.98391 0.96464 1.21102 0.92947 1.01389 1.00343 1.20802 0.99344 0.97657 0.94198 1.19650 0.92629 1.01994 0.97649 1.20763 0.96696 1.00533 0.99447 0.95434 0.92921 0.94664 0.94632 0.87800 0.92420 0.76371 0.73918 0.83581 0.85763 0.86120 0.85793 0.90886 0.90989 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.51 37.16 0.32 -2.62 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.52 2.24 -69.08 -0.15 6.37 16 4 H 0.06 1.51 7.58 -51.93 -0.39 1.12 16 5 C -0.54 -13.92 8.73 -34.44 -0.30 -14.22 16 6 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -23.95 11.29 55.43 0.63 -23.33 16 9 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 13 N -0.67 -13.91 5.01 -55.39 -0.28 -14.18 16 14 C 0.49 9.61 6.45 -11.63 -0.08 9.53 16 15 O -0.53 -11.09 13.62 5.49 0.07 -11.02 16 16 C 0.51 8.56 7.69 -11.63 -0.09 8.48 16 17 O -0.50 -9.08 13.64 5.48 0.07 -9.00 16 18 N -0.65 -9.19 4.96 -10.30 -0.05 -9.24 16 19 C 0.15 2.03 6.41 -83.75 -0.54 1.49 16 20 C -0.13 -1.76 8.72 -39.37 -0.34 -2.10 16 21 C -0.10 -1.17 10.04 -39.61 -0.40 -1.56 16 22 C -0.14 -1.36 10.04 -39.54 -0.40 -1.75 16 23 C -0.10 -0.99 9.70 -39.61 -0.38 -1.37 16 24 C -0.12 -1.30 5.90 -104.42 -0.62 -1.92 16 25 C -0.12 -1.03 9.45 36.01 0.34 -0.69 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 1.16 7.85 -51.93 -0.41 0.76 16 28 H 0.03 0.72 5.65 -51.93 -0.29 0.42 16 29 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 31 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.40 7.89 8.01 -40.82 -0.33 7.56 16 33 H 0.42 5.39 6.87 -40.82 -0.28 5.11 16 34 H 0.15 2.21 5.79 -52.49 -0.30 1.90 16 35 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 40 H 0.07 0.62 6.99 -51.93 -0.36 0.26 16 LS Contribution 331.41 15.07 4.99 4.99 Total: -1.00 -28.58 331.41 -7.63 -36.21 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -5.17 Total: 12.13 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -2.88 Total: -1.86 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.30 Total: -46.75 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: 0.15 Total: -20.02 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.58 -7.63 -36.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128198578.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.513 kcal (2) G-P(sol) polarization free energy of solvation -28.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds