Wall clock time and date at job start Tue Mar 31 2020 06:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46606 * 2 1 4 4 H 1.09002 * 109.47432 * 55.00439 * 3 2 1 5 5 C 1.50705 * 109.46862 * 175.00084 * 3 2 1 6 6 H 1.07999 * 119.99824 * 120.00161 * 5 3 2 7 7 C 1.37877 * 120.00124 * 299.99832 * 5 3 2 8 8 N 1.31517 * 119.99875 * 0.02562 * 7 5 3 9 9 Si 1.86790 * 120.00129 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47193 * 90.00337 * 9 7 5 11 11 H 1.48502 * 109.47358 * 210.00556 * 9 7 5 12 12 H 1.48506 * 109.47213 * 330.00338 * 9 7 5 13 13 N 1.46499 * 109.47492 * 295.00081 * 3 2 1 14 14 C 1.34780 * 120.00123 * 85.00161 * 13 3 2 15 15 O 1.21353 * 119.99783 * 0.02562 * 14 13 3 16 16 C 1.49351 * 119.99929 * 180.02562 * 14 13 3 17 17 O 1.21373 * 119.99846 * 359.97438 * 16 14 13 18 18 N 1.34777 * 119.99618 * 179.97438 * 16 14 13 19 19 C 1.39725 * 119.99659 * 174.48058 * 18 16 14 20 20 C 1.38959 * 120.07482 * 335.14400 * 19 18 16 21 21 C 1.38075 * 119.91827 * 179.77280 * 20 19 18 22 22 C 1.38310 * 120.07940 * 0.50716 * 21 20 19 23 23 C 1.38279 * 120.15400 * 359.74977 * 22 21 20 24 24 C 1.38122 * 120.07134 * 359.97438 * 23 22 21 25 25 C 1.50700 * 120.03320 * 179.97438 * 24 23 22 26 26 H 1.09005 * 109.46663 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47274 * 299.99796 * 1 2 3 28 28 H 1.08999 * 109.47205 * 60.00068 * 1 2 3 29 29 H 1.08994 * 109.46705 * 240.00240 * 2 1 3 30 30 H 1.08999 * 109.47205 * 119.99932 * 2 1 3 31 31 H 0.96995 * 120.00061 * 180.02562 * 8 7 5 32 32 H 0.97004 * 120.00079 * 265.00261 * 13 3 2 33 33 H 0.96998 * 120.00199 * 354.48112 * 18 16 14 34 34 H 1.08001 * 120.03727 * 0.02562 * 20 19 18 35 35 H 1.07997 * 119.95775 * 180.25517 * 21 20 19 36 36 H 1.07997 * 119.92618 * 179.76615 * 22 21 20 37 37 H 1.07995 * 119.96336 * 179.97438 * 23 22 21 38 38 H 1.08997 * 109.47144 * 270.02107 * 25 24 23 39 39 H 1.09002 * 109.47212 * 30.02956 * 25 24 23 40 40 H 1.09005 * 109.46431 * 150.02581 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8785 1.2279 8 7 3.4063 0.3367 2.1729 9 14 6.0049 0.8802 1.3811 10 1 6.4427 2.1131 2.0836 11 1 6.4391 -0.3109 2.1544 12 1 6.6131 0.8397 0.0268 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3399 2.6326 -0.4335 16 6 0.0397 3.3317 -2.6433 17 8 0.8148 3.3639 -3.5766 18 7 -1.1779 3.8981 -2.7585 19 6 -1.5058 4.6216 -3.9080 20 6 -0.5030 5.2008 -4.6760 21 6 -0.8304 5.9110 -5.8139 22 6 -2.1552 6.0552 -6.1839 23 6 -3.1560 5.4846 -5.4191 24 6 -2.8353 4.7679 -4.2827 25 6 -3.9267 4.1469 -3.4495 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8293 -0.0610 2.9498 32 1 2.2718 2.1233 -1.9978 33 1 -1.8265 3.8035 -2.0435 34 1 0.5315 5.0921 -4.3853 35 1 -0.0512 6.3580 -6.4135 36 1 -2.4087 6.6144 -7.0724 37 1 -4.1895 5.5994 -5.7107 38 1 -4.2521 4.8570 -2.6893 39 1 -4.7701 3.8882 -4.0899 40 1 -3.5473 3.2463 -2.9668 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128198578.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:13 Heat of formation + Delta-G solvation = -66.434439 kcal Electronic energy + Delta-G solvation = -22814.950895 eV Core-core repulsion = 19400.799689 eV Total energy + Delta-G solvation = -3414.151207 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.21702 -40.59894 -39.28390 -37.24031 -36.03840 -34.34904 -33.53340 -32.83963 -30.92356 -29.19406 -27.87308 -26.30166 -24.88801 -23.57782 -22.29339 -21.74574 -21.20486 -20.04373 -18.63878 -18.18537 -17.49632 -17.30354 -16.91260 -16.58639 -16.15801 -15.94575 -15.26481 -15.17085 -14.83645 -14.63435 -14.59695 -14.10012 -13.89480 -13.51597 -13.34762 -13.21017 -13.08096 -12.98102 -12.76107 -12.70458 -12.26166 -12.18954 -12.12787 -12.07991 -11.62821 -11.55737 -11.12646 -10.62298 -10.52854 -9.87229 -9.68354 -9.09521 -8.19892 -6.37010 -0.06471 0.43364 0.69712 1.30299 1.44653 1.46077 1.56250 2.12839 2.38563 2.71909 2.85541 3.10028 3.46092 3.88931 3.92284 4.22490 4.39601 4.43807 4.47069 4.51466 4.53462 4.69587 4.76853 4.79189 4.99026 5.00305 5.18598 5.23233 5.26921 5.33803 5.34781 5.37346 5.52198 5.55116 5.61489 5.67729 5.77802 6.01263 6.06744 6.09808 6.51822 6.65063 6.76138 7.07214 7.34851 8.85332 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028277 B = 0.003535 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.952577 B = 7919.449466 C = 8678.590440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.123 4.123 3 C 0.276 3.724 4 H 0.015 0.985 5 C -0.555 4.555 6 H 0.068 0.932 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.969 3.031 10 H -0.277 1.277 11 H -0.281 1.281 12 H -0.265 1.265 13 N -0.670 5.670 14 C 0.496 3.504 15 O -0.545 6.545 16 C 0.512 3.488 17 O -0.517 6.517 18 N -0.632 5.632 19 C 0.118 3.882 20 C -0.151 4.151 21 C -0.113 4.113 22 C -0.130 4.130 23 C -0.101 4.101 24 C -0.116 4.116 25 C -0.118 4.118 26 H 0.050 0.950 27 H 0.036 0.964 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.080 0.920 31 H 0.267 0.733 32 H 0.408 0.592 33 H 0.428 0.572 34 H 0.123 0.877 35 H 0.141 0.859 36 H 0.153 0.847 37 H 0.157 0.843 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.036 8.894 -14.214 21.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C 0.174 3.826 4 H 0.033 0.967 5 C -0.593 4.593 6 H 0.086 0.914 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.794 3.206 10 H -0.203 1.203 11 H -0.206 1.206 12 H -0.189 1.189 13 N -0.319 5.319 14 C 0.275 3.725 15 O -0.425 6.425 16 C 0.295 3.705 17 O -0.393 6.393 18 N -0.278 5.278 19 C 0.024 3.976 20 C -0.171 4.171 21 C -0.131 4.131 22 C -0.148 4.148 23 C -0.119 4.119 24 C -0.118 4.118 25 C -0.175 4.175 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.243 0.757 33 H 0.267 0.733 34 H 0.141 0.859 35 H 0.159 0.841 36 H 0.171 0.829 37 H 0.175 0.825 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.965 8.745 -13.947 20.955 hybrid contribution 1.212 -0.219 0.582 1.362 sum -11.754 8.527 -13.365 19.735 Atomic orbital electron populations 1.21714 0.96537 0.99740 1.00400 1.21821 0.94187 0.98505 1.01724 1.18655 0.94116 0.89604 0.80245 0.96668 1.21523 0.91220 1.39600 1.06958 0.91409 1.25681 1.03217 0.94124 0.94878 1.70007 1.37032 1.37921 1.09748 0.85390 0.79164 0.77600 0.78480 1.20299 1.20638 1.18915 1.46244 1.14330 1.52944 1.18402 1.19978 0.83786 0.80840 0.87866 1.90726 1.51564 1.59744 1.40430 1.20374 0.82765 0.79317 0.88089 1.90695 1.51598 1.57376 1.39620 1.43120 1.15081 1.49551 1.20008 1.17937 0.94499 0.96172 0.89010 1.21444 0.99516 0.98892 0.97295 1.21298 0.97971 0.98071 0.95775 1.21524 0.92091 1.00299 1.00919 1.21248 1.01081 0.96378 0.93195 1.19977 0.91980 1.01622 0.98239 1.20838 0.96553 1.00272 0.99838 0.93142 0.94486 0.94184 0.94186 0.90215 0.92336 0.75651 0.73263 0.85898 0.84122 0.82918 0.82517 0.89654 0.88880 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.38 8.51 71.98 0.61 -4.77 16 2 C -0.12 -5.92 5.45 30.60 0.17 -5.75 16 3 C 0.28 13.89 2.24 44.25 0.10 13.99 16 4 H 0.02 0.89 7.58 -2.39 -0.02 0.87 16 5 C -0.55 -29.29 8.73 25.60 0.22 -29.07 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 1.16 5.29 84.65 0.45 1.61 16 8 N -0.91 -50.47 11.29 21.45 0.24 -50.23 16 9 Si 0.97 41.84 29.54 68.60 2.03 43.86 16 10 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 12 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 13 N -0.67 -28.73 5.01 -447.53 -2.24 -30.97 16 14 C 0.50 19.74 6.45 87.24 0.56 20.31 16 15 O -0.55 -23.43 13.62 -3.26 -0.04 -23.47 16 16 C 0.51 17.68 7.69 87.24 0.67 18.35 16 17 O -0.52 -19.11 13.64 -3.32 -0.05 -19.16 16 18 N -0.63 -17.98 4.96 -304.84 -1.51 -19.49 16 19 C 0.12 3.09 6.41 38.22 0.24 3.34 16 20 C -0.15 -4.12 8.72 22.40 0.20 -3.92 16 21 C -0.11 -2.33 10.04 22.25 0.22 -2.11 16 22 C -0.13 -2.09 10.04 22.30 0.22 -1.87 16 23 C -0.10 -1.60 9.70 22.25 0.22 -1.39 16 24 C -0.12 -2.33 5.90 -19.73 -0.12 -2.44 16 25 C -0.12 -1.79 9.45 71.24 0.67 -1.11 16 26 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 27 H 0.04 1.66 7.85 -2.39 -0.02 1.64 16 28 H 0.04 1.63 5.65 -2.39 -0.01 1.62 16 29 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.08 4.24 5.95 -2.39 -0.01 4.23 16 31 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 32 H 0.41 16.41 8.01 -92.71 -0.74 15.67 16 33 H 0.43 10.89 6.87 -92.71 -0.64 10.25 16 34 H 0.12 3.86 5.79 -2.91 -0.02 3.85 16 35 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 36 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 37 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.09 1.02 8.09 -2.39 -0.02 1.00 16 40 H 0.06 0.98 6.99 -2.38 -0.02 0.96 16 Total: -1.00 -62.77 331.41 2.57 -60.20 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: -0.30 Total: 34.09 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 4.44 Total: 5.17 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -3.52 Total: -100.69 kcal Atomic # 8 Polarization: -42.54 SS G_CDS: -0.09 Total: -42.63 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Total: -62.77 2.57 -60.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128198578.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.235 kcal (2) G-P(sol) polarization free energy of solvation -62.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds