Wall clock time and date at job start Tue Mar 31 2020 06:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47148 * 2 1 4 4 H 1.08998 * 109.47047 * 54.99762 * 3 2 1 5 5 C 1.50696 * 109.47266 * 174.99852 * 3 2 1 6 6 H 1.08000 * 120.00142 * 120.00235 * 5 3 2 7 7 C 1.37880 * 119.99903 * 300.00143 * 5 3 2 8 8 N 1.31515 * 120.00188 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99953 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47059 * 59.99967 * 9 7 5 11 11 H 1.48499 * 109.47187 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47131 * 300.00243 * 9 7 5 13 13 N 1.46495 * 109.47287 * 294.99951 * 3 2 1 14 14 C 1.34778 * 120.00011 * 84.99665 * 13 3 2 15 15 O 1.21364 * 120.00287 * 0.02562 * 14 13 3 16 16 C 1.49352 * 120.00196 * 179.97438 * 14 13 3 17 17 O 1.21382 * 120.00111 * 0.02562 * 16 14 13 18 18 N 1.34778 * 120.00196 * 179.97438 * 16 14 13 19 19 C 1.39729 * 119.99940 * 185.27879 * 18 16 14 20 20 C 1.38927 * 120.07337 * 213.06072 * 19 18 16 21 21 C 1.38097 * 119.92044 * 179.72110 * 20 19 18 22 22 C 1.38301 * 120.07673 * 0.55490 * 21 20 19 23 23 C 1.50700 * 119.92208 * 179.74254 * 22 21 20 24 24 C 1.38289 * 120.15133 * 359.71816 * 22 21 20 25 25 C 1.38103 * 120.07413 * 0.02562 * 24 22 21 26 26 H 1.09002 * 109.47278 * 299.99908 * 1 2 3 27 27 H 1.09000 * 109.47275 * 60.00127 * 1 2 3 28 28 H 1.08999 * 109.46976 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47278 * 240.00092 * 2 1 3 30 30 H 1.08999 * 109.46783 * 119.99679 * 2 1 3 31 31 H 0.96995 * 120.00043 * 179.97438 * 8 7 5 32 32 H 0.96999 * 120.00563 * 265.00336 * 13 3 2 33 33 H 0.96997 * 120.00109 * 5.27771 * 18 16 14 34 34 H 1.08004 * 120.04089 * 359.97438 * 20 19 18 35 35 H 1.08005 * 119.96492 * 180.27618 * 21 20 19 36 36 H 1.09003 * 109.46848 * 269.97649 * 23 22 21 37 37 H 1.09001 * 109.47251 * 29.97800 * 23 22 21 38 38 H 1.09004 * 109.46809 * 149.97505 * 23 22 21 39 39 H 1.07994 * 119.96390 * 179.97438 * 24 22 21 40 40 H 1.08002 * 120.03382 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8784 1.2280 8 7 3.4061 0.3375 2.1734 9 14 6.0049 0.8800 1.3813 10 1 6.5004 2.2800 1.3809 11 1 6.3977 0.2168 2.6505 12 1 6.5967 0.1453 0.2343 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3398 2.6326 -0.4335 16 6 0.0403 3.3327 -2.6429 17 8 0.8155 3.3649 -3.5764 18 7 -1.1773 3.8991 -2.7582 19 6 -1.5890 4.4266 -3.9849 20 6 -2.4188 5.5402 -4.0205 21 6 -2.8192 6.0624 -5.2346 22 6 -2.4043 5.4712 -6.4140 23 6 -2.8481 6.0405 -7.7369 24 6 -1.5829 4.3591 -6.3821 25 6 -1.1745 3.8349 -5.1715 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8292 -0.0610 2.9500 32 1 2.2719 2.1232 -1.9978 33 1 -1.7677 3.9405 -1.9898 34 1 -2.7471 5.9995 -3.0997 35 1 -3.4607 6.9309 -5.2631 36 1 -3.7818 5.5674 -8.0411 37 1 -3.0008 7.1151 -7.6372 38 1 -2.0825 5.8506 -8.4893 39 1 -1.2611 3.8996 -7.3050 40 1 -0.5333 2.9662 -5.1474 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132061993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:17 Heat of formation + Delta-G solvation = -52.573616 kcal Electronic energy + Delta-G solvation = -22495.390502 eV Core-core repulsion = 19081.840346 eV Total energy + Delta-G solvation = -3413.550156 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.81892 -39.28563 -38.02871 -35.60112 -34.93115 -32.45583 -31.64622 -31.09518 -30.98770 -27.47780 -26.76652 -24.32905 -23.16567 -22.82332 -21.35851 -20.21523 -19.50467 -18.64174 -17.47863 -16.48265 -16.01571 -15.62873 -15.49005 -15.29984 -14.80972 -14.33107 -14.05221 -13.96158 -13.81295 -13.51022 -13.33885 -12.76507 -12.53607 -12.31707 -12.09588 -11.86727 -11.62149 -11.36723 -11.30244 -11.13981 -10.98172 -10.86697 -10.39429 -10.29360 -10.28379 -9.72465 -9.17503 -9.14321 -8.99004 -8.58230 -8.12640 -8.04605 -6.19080 -4.28973 1.02862 1.28870 1.90051 2.67738 3.24170 3.29089 3.31371 3.54134 3.77782 4.07082 4.32054 4.67995 4.73508 4.89489 5.05786 5.11022 5.13358 5.25934 5.37533 5.43663 5.58608 5.71541 5.88689 6.15798 6.19567 6.29250 6.34101 6.37259 6.47878 6.53054 6.87907 6.92451 7.00297 7.11855 7.18139 7.25019 7.47669 7.61336 7.75872 7.89936 8.06071 8.41638 8.59565 8.83610 9.37867 10.86296 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031660 B = 0.003142 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.185387 B = 8910.470195 C = 9318.105865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.538 4.538 6 H 0.064 0.936 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.667 5.667 14 C 0.494 3.506 15 O -0.529 6.529 16 C 0.506 3.494 17 O -0.505 6.505 18 N -0.652 5.652 19 C 0.145 3.855 20 C -0.141 4.141 21 C -0.101 4.101 22 C -0.108 4.108 23 C -0.111 4.111 24 C -0.100 4.100 25 C -0.118 4.118 26 H 0.052 0.948 27 H 0.034 0.966 28 H 0.026 0.974 29 H 0.035 0.965 30 H 0.104 0.896 31 H 0.266 0.734 32 H 0.402 0.598 33 H 0.422 0.578 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.125 0.875 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.812 8.124 -14.140 20.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.576 4.576 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.316 5.316 14 C 0.273 3.727 15 O -0.408 6.408 16 C 0.289 3.711 17 O -0.379 6.379 18 N -0.299 5.299 19 C 0.051 3.949 20 C -0.161 4.161 21 C -0.120 4.120 22 C -0.108 4.108 23 C -0.167 4.167 24 C -0.119 4.119 25 C -0.138 4.138 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.122 0.878 31 H 0.076 0.924 32 H 0.236 0.764 33 H 0.260 0.740 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.143 0.857 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.709 7.946 -13.864 19.811 hybrid contribution 0.995 -0.005 0.200 1.015 sum -10.714 7.941 -13.664 19.094 Atomic orbital electron populations 1.21857 0.98300 0.98439 1.01025 1.21967 0.92645 0.99387 1.02793 1.19017 0.94782 0.89399 0.80080 0.92727 1.21170 0.90302 1.39556 1.06606 0.91809 1.24871 0.98848 0.94573 0.95215 1.69870 1.35385 1.37337 1.09334 0.86463 0.84487 0.78431 0.77500 1.20094 1.21076 1.20036 1.46466 1.13335 1.52535 1.19227 1.19589 0.84540 0.81550 0.87045 1.90745 1.51122 1.59578 1.39338 1.21026 0.81461 0.78802 0.89777 1.90739 1.50463 1.56137 1.40527 1.43264 1.17353 1.57300 1.11972 1.17786 0.97773 0.93972 0.85372 1.20915 1.01168 0.95162 0.98878 1.20794 1.00076 0.99858 0.91270 1.19911 0.98789 0.96695 0.95439 1.20749 1.01413 1.00697 0.93887 1.20914 0.97460 0.95996 0.97509 1.21196 1.00903 1.00731 0.90940 0.92923 0.94652 0.95450 0.94645 0.87824 0.92360 0.76387 0.73958 0.85464 0.85725 0.91364 0.91700 0.91640 0.85731 0.84648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 37.16 0.32 -2.64 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.56 2.24 -69.09 -0.15 6.41 16 4 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 5 C -0.54 -14.00 8.73 -34.44 -0.30 -14.30 16 6 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.05 11.29 55.43 0.63 -23.43 16 9 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 N -0.67 -14.01 5.01 -55.40 -0.28 -14.28 16 14 C 0.49 9.66 6.45 -11.63 -0.08 9.59 16 15 O -0.53 -11.15 13.62 5.48 0.07 -11.08 16 16 C 0.51 8.62 7.62 -11.63 -0.09 8.53 16 17 O -0.51 -9.26 14.16 5.47 0.08 -9.18 16 18 N -0.65 -9.16 5.32 -10.30 -0.05 -9.22 16 19 C 0.15 1.92 6.28 -83.75 -0.53 1.39 16 20 C -0.14 -1.53 9.96 -39.38 -0.39 -1.92 16 21 C -0.10 -0.98 9.69 -39.61 -0.38 -1.36 16 22 C -0.11 -1.06 5.88 -104.58 -0.62 -1.67 16 23 C -0.11 -0.77 10.01 36.01 0.36 -0.40 16 24 C -0.10 -1.11 9.69 -39.61 -0.38 -1.49 16 25 C -0.12 -1.57 8.65 -39.38 -0.34 -1.91 16 26 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 27 H 0.03 0.73 5.65 -51.93 -0.29 0.43 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 31 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 32 H 0.40 7.94 8.01 -40.82 -0.33 7.62 16 33 H 0.42 5.25 8.29 -40.82 -0.34 4.91 16 34 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 35 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 38 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 39 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.14 1.97 6.42 -52.49 -0.34 1.64 16 LS Contribution 335.30 15.07 5.05 5.05 Total: -1.00 -28.93 335.30 -7.67 -36.60 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -5.32 Total: 11.44 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -2.82 Total: -1.26 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 0.29 Total: -46.93 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: 0.15 Total: -20.26 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.93 -7.67 -36.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132061993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.978 kcal (2) G-P(sol) polarization free energy of solvation -28.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds