Wall clock time and date at job start Tue Mar 31 2020 06:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47148 * 2 1 4 4 H 1.08998 * 109.47047 * 54.99762 * 3 2 1 5 5 C 1.50696 * 109.47266 * 174.99852 * 3 2 1 6 6 H 1.08000 * 120.00142 * 120.00235 * 5 3 2 7 7 C 1.37880 * 119.99903 * 300.00143 * 5 3 2 8 8 N 1.31515 * 120.00188 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99953 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47059 * 59.99967 * 9 7 5 11 11 H 1.48499 * 109.47187 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47131 * 300.00243 * 9 7 5 13 13 N 1.46495 * 109.47287 * 294.99951 * 3 2 1 14 14 C 1.34778 * 120.00011 * 84.99665 * 13 3 2 15 15 O 1.21364 * 120.00287 * 0.02562 * 14 13 3 16 16 C 1.49352 * 120.00196 * 179.97438 * 14 13 3 17 17 O 1.21382 * 120.00111 * 0.02562 * 16 14 13 18 18 N 1.34778 * 120.00196 * 179.97438 * 16 14 13 19 19 C 1.39729 * 119.99940 * 185.27879 * 18 16 14 20 20 C 1.38927 * 120.07337 * 213.06072 * 19 18 16 21 21 C 1.38097 * 119.92044 * 179.72110 * 20 19 18 22 22 C 1.38301 * 120.07673 * 0.55490 * 21 20 19 23 23 C 1.50700 * 119.92208 * 179.74254 * 22 21 20 24 24 C 1.38289 * 120.15133 * 359.71816 * 22 21 20 25 25 C 1.38103 * 120.07413 * 0.02562 * 24 22 21 26 26 H 1.09002 * 109.47278 * 299.99908 * 1 2 3 27 27 H 1.09000 * 109.47275 * 60.00127 * 1 2 3 28 28 H 1.08999 * 109.46976 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47278 * 240.00092 * 2 1 3 30 30 H 1.08999 * 109.46783 * 119.99679 * 2 1 3 31 31 H 0.96995 * 120.00043 * 179.97438 * 8 7 5 32 32 H 0.96999 * 120.00563 * 265.00336 * 13 3 2 33 33 H 0.96997 * 120.00109 * 5.27771 * 18 16 14 34 34 H 1.08004 * 120.04089 * 359.97438 * 20 19 18 35 35 H 1.08005 * 119.96492 * 180.27618 * 21 20 19 36 36 H 1.09003 * 109.46848 * 269.97649 * 23 22 21 37 37 H 1.09001 * 109.47251 * 29.97800 * 23 22 21 38 38 H 1.09004 * 109.46809 * 149.97505 * 23 22 21 39 39 H 1.07994 * 119.96390 * 179.97438 * 24 22 21 40 40 H 1.08002 * 120.03382 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8784 1.2280 8 7 3.4061 0.3375 2.1734 9 14 6.0049 0.8800 1.3813 10 1 6.5004 2.2800 1.3809 11 1 6.3977 0.2168 2.6505 12 1 6.5967 0.1453 0.2343 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3398 2.6326 -0.4335 16 6 0.0403 3.3327 -2.6429 17 8 0.8155 3.3649 -3.5764 18 7 -1.1773 3.8991 -2.7582 19 6 -1.5890 4.4266 -3.9849 20 6 -2.4188 5.5402 -4.0205 21 6 -2.8192 6.0624 -5.2346 22 6 -2.4043 5.4712 -6.4140 23 6 -2.8481 6.0405 -7.7369 24 6 -1.5829 4.3591 -6.3821 25 6 -1.1745 3.8349 -5.1715 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8292 -0.0610 2.9500 32 1 2.2719 2.1232 -1.9978 33 1 -1.7677 3.9405 -1.9898 34 1 -2.7471 5.9995 -3.0997 35 1 -3.4607 6.9309 -5.2631 36 1 -3.7818 5.5674 -8.0411 37 1 -3.0008 7.1151 -7.6372 38 1 -2.0825 5.8506 -8.4893 39 1 -1.2611 3.8996 -7.3050 40 1 -0.5333 2.9662 -5.1474 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132061993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:16 Heat of formation + Delta-G solvation = -70.743735 kcal Electronic energy + Delta-G solvation = -22496.178417 eV Core-core repulsion = 19081.840346 eV Total energy + Delta-G solvation = -3414.338072 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.11471 -40.54232 -39.33187 -37.24569 -36.23512 -34.34261 -32.84515 -32.51221 -31.91458 -29.25313 -27.83877 -25.79101 -24.64335 -23.95837 -22.46647 -21.66505 -21.19544 -20.09353 -18.68400 -18.17060 -17.53905 -17.06606 -17.01156 -16.35515 -16.21605 -15.82955 -15.38310 -15.08714 -14.71811 -14.62626 -14.56728 -14.37564 -13.87984 -13.53242 -13.26838 -13.21071 -13.04214 -12.94996 -12.85713 -12.67857 -12.37954 -12.16669 -12.12699 -12.01512 -11.61939 -11.31479 -11.13202 -10.64899 -10.54192 -9.90310 -9.86552 -9.04937 -8.19731 -6.36971 -0.04692 0.43874 0.63953 1.32663 1.45784 1.46353 1.54636 2.13974 2.38713 2.74546 2.81506 3.10061 3.48396 3.91465 4.01465 4.10144 4.39761 4.46771 4.47233 4.49818 4.53074 4.69517 4.84343 4.91487 5.00091 5.07014 5.12009 5.19609 5.28180 5.33998 5.36089 5.37368 5.43240 5.54559 5.66666 5.69004 5.77659 5.99260 6.06421 6.09732 6.54486 6.65195 6.78145 7.08110 7.34928 8.85326 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031660 B = 0.003142 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.185387 B = 8910.470195 C = 9318.105865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.123 4.123 3 C 0.276 3.724 4 H 0.015 0.985 5 C -0.556 4.556 6 H 0.068 0.932 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.969 3.031 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.267 1.267 13 N -0.670 5.670 14 C 0.496 3.504 15 O -0.545 6.545 16 C 0.514 3.486 17 O -0.522 6.522 18 N -0.635 5.635 19 C 0.114 3.886 20 C -0.137 4.137 21 C -0.101 4.101 22 C -0.103 4.103 23 C -0.110 4.110 24 C -0.109 4.109 25 C -0.138 4.138 26 H 0.036 0.964 27 H 0.039 0.961 28 H 0.049 0.951 29 H 0.039 0.961 30 H 0.079 0.921 31 H 0.268 0.732 32 H 0.408 0.592 33 H 0.429 0.571 34 H 0.147 0.853 35 H 0.156 0.844 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.140 0.860 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.642 9.468 -15.943 22.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C 0.174 3.826 4 H 0.033 0.967 5 C -0.594 4.594 6 H 0.086 0.914 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.793 3.207 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.192 1.192 13 N -0.320 5.320 14 C 0.276 3.724 15 O -0.425 6.425 16 C 0.296 3.704 17 O -0.397 6.397 18 N -0.282 5.282 19 C 0.020 3.980 20 C -0.157 4.157 21 C -0.120 4.120 22 C -0.103 4.103 23 C -0.167 4.167 24 C -0.128 4.128 25 C -0.158 4.158 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.243 0.757 33 H 0.268 0.732 34 H 0.165 0.835 35 H 0.174 0.826 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.158 0.842 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.581 9.313 -15.697 22.168 hybrid contribution 1.127 -0.341 0.682 1.361 sum -11.454 8.972 -15.014 20.908 Atomic orbital electron populations 1.21709 0.96566 0.99706 1.00385 1.21823 0.94138 0.98547 1.01715 1.18643 0.94091 0.89589 0.80268 0.96666 1.21492 0.91228 1.39680 1.06966 0.91425 1.25682 1.03215 0.94130 0.94846 1.69999 1.37107 1.37876 1.09753 0.85451 0.79156 0.78450 0.77622 1.19786 1.20784 1.19199 1.46242 1.14278 1.53097 1.18368 1.19990 0.83709 0.80865 0.87885 1.90729 1.51451 1.59955 1.40341 1.20349 0.82447 0.79317 0.88265 1.90736 1.51226 1.57252 1.40497 1.43093 1.16136 1.56112 1.12873 1.18012 0.99765 0.95644 0.84537 1.21196 0.99948 0.94098 1.00482 1.21216 0.99773 1.00432 0.90553 1.20336 0.97258 0.95649 0.97096 1.20823 1.02081 1.01552 0.92215 1.21147 0.97788 0.96635 0.97223 1.21194 1.01574 1.00813 0.92199 0.94494 0.94232 0.93182 0.94183 0.90230 0.92316 0.75670 0.73153 0.83505 0.82596 0.90074 0.90201 0.91044 0.84240 0.86732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.41 8.51 71.98 0.61 -4.80 16 2 C -0.12 -5.93 5.45 30.59 0.17 -5.77 16 3 C 0.28 13.94 2.24 44.25 0.10 14.04 16 4 H 0.02 0.89 7.58 -2.39 -0.02 0.88 16 5 C -0.56 -29.40 8.73 25.60 0.22 -29.17 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.41 16 7 C 0.02 1.18 5.29 84.66 0.45 1.63 16 8 N -0.91 -50.63 11.29 21.45 0.24 -50.39 16 9 Si 0.97 41.90 29.54 68.60 2.03 43.93 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 12 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 13 N -0.67 -28.84 5.01 -447.54 -2.24 -31.08 16 14 C 0.50 19.76 6.45 87.24 0.56 20.32 16 15 O -0.55 -23.46 13.62 -3.29 -0.04 -23.50 16 16 C 0.51 17.69 7.62 87.24 0.67 18.35 16 17 O -0.52 -19.42 14.16 -3.35 -0.05 -19.47 16 18 N -0.64 -17.72 5.32 -304.83 -1.62 -19.34 16 19 C 0.11 2.91 6.28 38.21 0.24 3.15 16 20 C -0.14 -2.68 9.96 22.40 0.22 -2.46 16 21 C -0.10 -1.63 9.69 22.25 0.22 -1.41 16 22 C -0.10 -1.73 5.88 -19.84 -0.12 -1.84 16 23 C -0.11 -1.13 10.01 71.24 0.71 -0.41 16 24 C -0.11 -2.27 9.69 22.25 0.22 -2.06 16 25 C -0.14 -3.66 8.65 22.40 0.19 -3.46 16 26 H 0.04 1.67 7.85 -2.39 -0.02 1.65 16 27 H 0.04 1.63 5.65 -2.39 -0.01 1.62 16 28 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.08 4.24 5.95 -2.39 -0.01 4.23 16 31 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 32 H 0.41 16.47 8.01 -92.71 -0.74 15.72 16 33 H 0.43 10.49 8.29 -92.71 -0.77 9.72 16 34 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 35 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 36 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.08 0.61 8.08 -2.39 -0.02 0.59 16 38 H 0.07 0.67 8.08 -2.38 -0.02 0.65 16 39 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 40 H 0.11 3.46 6.42 -2.91 -0.02 3.44 16 Total: -1.00 -63.11 335.30 2.34 -60.77 By element: Atomic # 1 Polarization: 33.41 SS G_CDS: -0.43 Total: 32.98 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 4.46 Total: 6.11 kcal Atomic # 7 Polarization: -97.19 SS G_CDS: -3.62 Total: -100.82 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -0.09 Total: -42.97 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -63.11 2.34 -60.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132061993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.970 kcal (2) G-P(sol) polarization free energy of solvation -63.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds