Wall clock time and date at job start Tue Mar 31 2020 06:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.47053 * 2 1 4 4 H 1.08999 * 109.47619 * 304.90325 * 3 2 1 5 5 C 1.50700 * 109.46982 * 184.90139 * 3 2 1 6 6 H 1.08004 * 119.99855 * 245.44742 * 5 3 2 7 7 C 1.37879 * 120.00262 * 65.44775 * 5 3 2 8 8 N 1.31512 * 120.00011 * 197.08620 * 7 5 3 9 9 Si 1.86794 * 119.99694 * 17.09105 * 7 5 3 10 10 H 1.48503 * 109.47260 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.47509 * 299.99947 * 9 7 5 12 12 H 1.48507 * 109.47535 * 59.99953 * 9 7 5 13 13 N 1.46499 * 109.47005 * 64.90381 * 3 2 1 14 14 C 1.34782 * 119.99748 * 274.99834 * 13 3 2 15 15 O 1.21354 * 119.99910 * 359.97438 * 14 13 3 16 16 C 1.49355 * 119.99900 * 180.02562 * 14 13 3 17 17 O 1.21374 * 119.99831 * 359.97438 * 16 14 13 18 18 N 1.34772 * 119.99982 * 179.97438 * 16 14 13 19 19 C 1.39729 * 120.00142 * 185.25562 * 18 16 14 20 20 C 1.38932 * 120.07192 * 213.10653 * 19 18 16 21 21 C 1.38095 * 119.91506 * 179.76602 * 20 19 18 22 22 C 1.38296 * 120.08314 * 0.53025 * 21 20 19 23 23 C 1.50699 * 119.92844 * 179.72526 * 22 21 20 24 24 C 1.38294 * 120.14790 * 359.69776 * 22 21 20 25 25 C 1.38104 * 120.07737 * 0.04543 * 24 22 21 26 26 H 1.08990 * 109.46986 * 300.00054 * 1 2 3 27 27 H 1.08995 * 109.46699 * 60.00058 * 1 2 3 28 28 H 1.08997 * 109.46822 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46792 * 239.99988 * 2 1 3 30 30 H 1.09006 * 109.46988 * 120.00302 * 2 1 3 31 31 H 0.96997 * 120.00499 * 354.94680 * 8 7 5 32 32 H 0.97001 * 120.00122 * 95.00047 * 13 3 2 33 33 H 0.96998 * 119.99813 * 5.25462 * 18 16 14 34 34 H 1.07990 * 120.04055 * 359.97438 * 20 19 18 35 35 H 1.08003 * 119.96116 * 180.25176 * 21 20 19 36 36 H 1.09003 * 109.46867 * 269.97733 * 23 22 21 37 37 H 1.09002 * 109.46917 * 29.97195 * 23 22 21 38 38 H 1.08998 * 109.47093 * 149.97649 * 23 22 21 39 39 H 1.07995 * 119.96120 * 180.02562 * 24 22 21 40 40 H 1.07993 * 120.03851 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6068 1.9811 -0.8428 5 6 3.5421 1.4442 -0.1214 6 1 4.1494 1.8090 0.6938 7 6 4.1413 0.9799 -1.2732 8 7 5.4177 0.6634 -1.2688 9 14 3.1399 0.8007 -2.8398 10 1 4.0105 0.2871 -3.9277 11 1 2.0235 -0.1506 -2.6077 12 1 2.5898 2.1239 -3.2298 13 7 1.6505 2.0981 1.2508 14 6 0.4329 2.6651 1.3637 15 8 -0.3404 2.6328 0.4290 16 6 0.0360 3.3340 2.6387 17 8 0.8096 3.3666 3.5733 18 7 -1.1813 3.9014 2.7513 19 6 -1.5126 4.6217 3.9019 20 6 -2.8204 4.6215 4.3709 21 6 -3.1432 5.3305 5.5111 22 6 -2.1690 6.0491 6.1797 23 6 -2.5265 6.8266 7.4201 24 6 -0.8672 6.0553 5.7129 25 6 -0.5362 5.3441 4.5762 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 5.9548 0.8251 -0.4774 32 1 2.2688 2.1242 1.9978 33 1 -1.8274 3.8098 2.0337 34 1 -3.5827 4.0648 3.8464 35 1 -4.1588 5.3275 5.8787 36 1 -2.8237 7.8378 7.1420 37 1 -3.3523 6.3333 7.9328 38 1 -1.6622 6.8712 8.0827 39 1 -0.1088 6.6171 6.2376 40 1 0.4804 5.3497 4.2120 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132062218.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:18 Heat of formation + Delta-G solvation = -51.830526 kcal Electronic energy + Delta-G solvation = -22567.798624 eV Core-core repulsion = 19154.280691 eV Total energy + Delta-G solvation = -3413.517933 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.92321 -39.41074 -38.16889 -35.76476 -35.06202 -32.51681 -31.70843 -31.52465 -31.11459 -27.68318 -26.88066 -24.31715 -23.15706 -22.40402 -21.49576 -20.38075 -19.70466 -18.82758 -17.70075 -17.15880 -16.24257 -15.97199 -15.55280 -15.19140 -15.07332 -14.23059 -14.09336 -13.95626 -13.75791 -13.53766 -13.39865 -12.77318 -12.62915 -12.50819 -12.40034 -12.30284 -11.91732 -11.82436 -11.40543 -11.18254 -11.00042 -10.79264 -10.51723 -10.36761 -9.97282 -9.67722 -9.29880 -9.14895 -9.06467 -8.40626 -8.34404 -8.16510 -6.65172 -4.29305 0.96280 1.24115 1.78572 2.56028 3.32735 3.39455 3.43224 3.54179 3.68593 3.96257 4.35888 4.63023 4.69367 4.84676 4.89293 5.06437 5.09413 5.21172 5.33845 5.38449 5.54070 5.67789 5.84014 5.95613 5.98976 6.10804 6.13346 6.14327 6.31140 6.43571 6.53319 6.66963 6.76762 6.83131 6.88312 6.99485 7.18345 7.24740 7.48100 7.76744 8.15283 8.23420 8.46045 8.73917 9.40118 10.76154 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034678 B = 0.003281 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.239044 B = 8531.563565 C = 8975.778415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.246 3.754 4 H 0.047 0.953 5 C -0.621 4.621 6 H 0.064 0.936 7 C 0.041 3.959 8 N -0.894 5.894 9 Si 1.040 2.960 10 H -0.282 1.282 11 H -0.268 1.268 12 H -0.279 1.279 13 N -0.660 5.660 14 C 0.495 3.505 15 O -0.531 6.531 16 C 0.507 3.493 17 O -0.503 6.503 18 N -0.651 5.651 19 C 0.144 3.856 20 C -0.140 4.140 21 C -0.102 4.102 22 C -0.106 4.106 23 C -0.111 4.111 24 C -0.100 4.100 25 C -0.117 4.117 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.034 0.966 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.270 0.730 32 H 0.406 0.594 33 H 0.422 0.578 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.125 0.875 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.604 8.898 12.399 22.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C 0.143 3.857 4 H 0.064 0.936 5 C -0.659 4.659 6 H 0.083 0.917 7 C -0.166 4.166 8 N -0.526 5.526 9 Si 0.867 3.133 10 H -0.208 1.208 11 H -0.195 1.195 12 H -0.205 1.205 13 N -0.309 5.309 14 C 0.274 3.726 15 O -0.410 6.410 16 C 0.290 3.710 17 O -0.376 6.376 18 N -0.298 5.298 19 C 0.049 3.951 20 C -0.160 4.160 21 C -0.120 4.120 22 C -0.107 4.107 23 C -0.168 4.168 24 C -0.119 4.119 25 C -0.137 4.137 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.241 0.759 33 H 0.260 0.740 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.143 0.857 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.396 8.315 10.748 21.296 hybrid contribution -0.020 0.470 1.659 1.724 sum -16.417 8.785 12.407 22.374 Atomic orbital electron populations 1.21899 0.97362 0.99268 1.01706 1.22386 0.93814 0.99378 1.02372 1.19268 0.96240 0.88704 0.81498 0.93575 1.22069 0.89239 1.49796 1.04814 0.91746 1.25695 0.97404 0.92193 1.01347 1.70865 1.07777 1.40127 1.33856 0.84117 0.75576 0.77718 0.75851 1.20778 1.19458 1.20531 1.46209 1.13552 1.52347 1.18802 1.19665 0.84372 0.81357 0.87219 1.90732 1.51380 1.59451 1.39410 1.20883 0.81895 0.78999 0.89260 1.90753 1.50736 1.56602 1.39496 1.43235 1.16364 1.51025 1.19179 1.17775 0.94154 0.94200 0.88926 1.20904 0.95079 1.02273 0.97789 1.20796 0.99086 0.97228 0.94912 1.19923 0.93604 0.99336 0.97830 1.20754 1.02033 0.99392 0.94607 1.20927 0.95854 0.98986 0.96094 1.21203 1.00010 0.95986 0.96508 0.93719 0.92765 0.94673 0.90811 0.92694 0.91924 0.75871 0.73967 0.85472 0.85685 0.91318 0.91673 0.91602 0.85670 0.84637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.51 37.16 0.32 -2.46 16 2 C -0.14 -3.04 5.29 -26.73 -0.14 -3.19 16 3 C 0.25 5.70 1.83 -69.09 -0.13 5.58 16 4 H 0.05 1.14 6.25 -51.93 -0.32 0.81 16 5 C -0.62 -16.55 9.01 -34.44 -0.31 -16.86 16 6 H 0.06 1.82 7.96 -52.48 -0.42 1.40 16 7 C 0.04 1.13 5.31 -17.82 -0.09 1.03 16 8 N -0.89 -26.24 13.70 55.43 0.76 -25.49 16 9 Si 1.04 24.28 26.29 -169.99 -4.47 19.82 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -5.79 5.69 56.52 0.32 -5.47 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.66 -13.52 5.01 -55.40 -0.28 -13.80 16 14 C 0.50 9.27 6.45 -11.63 -0.07 9.20 16 15 O -0.53 -10.50 13.62 5.49 0.07 -10.42 16 16 C 0.51 8.36 7.62 -11.63 -0.09 8.27 16 17 O -0.50 -9.07 14.16 5.48 0.08 -8.99 16 18 N -0.65 -8.78 5.32 -10.30 -0.05 -8.84 16 19 C 0.14 1.84 6.28 -83.75 -0.53 1.31 16 20 C -0.14 -1.46 9.96 -39.38 -0.39 -1.85 16 21 C -0.10 -0.95 9.69 -39.61 -0.38 -1.33 16 22 C -0.11 -1.02 5.88 -104.58 -0.62 -1.63 16 23 C -0.11 -0.75 10.01 36.01 0.36 -0.39 16 24 C -0.10 -1.09 9.69 -39.61 -0.38 -1.47 16 25 C -0.12 -1.54 8.65 -39.38 -0.34 -1.88 16 26 H 0.04 0.84 5.65 -51.93 -0.29 0.55 16 27 H 0.05 1.06 7.84 -51.93 -0.41 0.65 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 1.65 4.78 -51.93 -0.25 1.40 16 30 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.27 7.89 8.73 -40.82 -0.36 7.54 16 32 H 0.41 8.04 8.00 -40.82 -0.33 7.72 16 33 H 0.42 4.94 8.29 -40.82 -0.34 4.60 16 34 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 38 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 39 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 40 H 0.14 1.97 6.42 -52.49 -0.34 1.63 16 LS Contribution 330.87 15.07 4.99 4.99 Total: -1.00 -30.12 330.87 -7.01 -37.13 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -5.30 Total: 11.28 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -2.80 Total: -5.67 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.43 Total: -48.12 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: 0.15 Total: -19.42 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -4.47 Total: 19.82 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.12 -7.01 -37.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132062218.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.705 kcal (2) G-P(sol) polarization free energy of solvation -30.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds