Wall clock time and date at job start Tue Mar 31 2020 06:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.47053 * 2 1 4 4 H 1.08999 * 109.47619 * 304.90325 * 3 2 1 5 5 C 1.50700 * 109.46982 * 184.90139 * 3 2 1 6 6 H 1.08004 * 119.99855 * 245.44742 * 5 3 2 7 7 C 1.37879 * 120.00262 * 65.44775 * 5 3 2 8 8 N 1.31512 * 120.00011 * 197.08620 * 7 5 3 9 9 Si 1.86794 * 119.99694 * 17.09105 * 7 5 3 10 10 H 1.48503 * 109.47260 * 179.97438 * 9 7 5 11 11 H 1.48504 * 109.47509 * 299.99947 * 9 7 5 12 12 H 1.48507 * 109.47535 * 59.99953 * 9 7 5 13 13 N 1.46499 * 109.47005 * 64.90381 * 3 2 1 14 14 C 1.34782 * 119.99748 * 274.99834 * 13 3 2 15 15 O 1.21354 * 119.99910 * 359.97438 * 14 13 3 16 16 C 1.49355 * 119.99900 * 180.02562 * 14 13 3 17 17 O 1.21374 * 119.99831 * 359.97438 * 16 14 13 18 18 N 1.34772 * 119.99982 * 179.97438 * 16 14 13 19 19 C 1.39729 * 120.00142 * 185.25562 * 18 16 14 20 20 C 1.38932 * 120.07192 * 213.10653 * 19 18 16 21 21 C 1.38095 * 119.91506 * 179.76602 * 20 19 18 22 22 C 1.38296 * 120.08314 * 0.53025 * 21 20 19 23 23 C 1.50699 * 119.92844 * 179.72526 * 22 21 20 24 24 C 1.38294 * 120.14790 * 359.69776 * 22 21 20 25 25 C 1.38104 * 120.07737 * 0.04543 * 24 22 21 26 26 H 1.08990 * 109.46986 * 300.00054 * 1 2 3 27 27 H 1.08995 * 109.46699 * 60.00058 * 1 2 3 28 28 H 1.08997 * 109.46822 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46792 * 239.99988 * 2 1 3 30 30 H 1.09006 * 109.46988 * 120.00302 * 2 1 3 31 31 H 0.96997 * 120.00499 * 354.94680 * 8 7 5 32 32 H 0.97001 * 120.00122 * 95.00047 * 13 3 2 33 33 H 0.96998 * 119.99813 * 5.25462 * 18 16 14 34 34 H 1.07990 * 120.04055 * 359.97438 * 20 19 18 35 35 H 1.08003 * 119.96116 * 180.25176 * 21 20 19 36 36 H 1.09003 * 109.46867 * 269.97733 * 23 22 21 37 37 H 1.09002 * 109.46917 * 29.97195 * 23 22 21 38 38 H 1.08998 * 109.47093 * 149.97649 * 23 22 21 39 39 H 1.07995 * 119.96120 * 180.02562 * 24 22 21 40 40 H 1.07993 * 120.03851 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6068 1.9811 -0.8428 5 6 3.5421 1.4442 -0.1214 6 1 4.1494 1.8090 0.6938 7 6 4.1413 0.9799 -1.2732 8 7 5.4177 0.6634 -1.2688 9 14 3.1399 0.8007 -2.8398 10 1 4.0105 0.2871 -3.9277 11 1 2.0235 -0.1506 -2.6077 12 1 2.5898 2.1239 -3.2298 13 7 1.6505 2.0981 1.2508 14 6 0.4329 2.6651 1.3637 15 8 -0.3404 2.6328 0.4290 16 6 0.0360 3.3340 2.6387 17 8 0.8096 3.3666 3.5733 18 7 -1.1813 3.9014 2.7513 19 6 -1.5126 4.6217 3.9019 20 6 -2.8204 4.6215 4.3709 21 6 -3.1432 5.3305 5.5111 22 6 -2.1690 6.0491 6.1797 23 6 -2.5265 6.8266 7.4201 24 6 -0.8672 6.0553 5.7129 25 6 -0.5362 5.3441 4.5762 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 5.9548 0.8251 -0.4774 32 1 2.2688 2.1242 1.9978 33 1 -1.8274 3.8098 2.0337 34 1 -3.5827 4.0648 3.8464 35 1 -4.1588 5.3275 5.8787 36 1 -2.8237 7.8378 7.1420 37 1 -3.3523 6.3333 7.9328 38 1 -1.6622 6.8712 8.0827 39 1 -0.1088 6.6171 6.2376 40 1 0.4804 5.3497 4.2120 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132062218.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:18 Heat of formation + Delta-G solvation = -72.276830 kcal Electronic energy + Delta-G solvation = -22568.685242 eV Core-core repulsion = 19154.280691 eV Total energy + Delta-G solvation = -3414.404552 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.18203 -40.62774 -39.39828 -37.37378 -36.28498 -34.51148 -33.19682 -32.54877 -31.93960 -29.42669 -27.88899 -25.62636 -24.26264 -23.97003 -22.58049 -21.73145 -21.31340 -20.36437 -19.26676 -18.51905 -17.65711 -17.38256 -16.74679 -16.38805 -16.23595 -15.62590 -15.28211 -15.16575 -14.80589 -14.61068 -14.54992 -14.49754 -14.37178 -14.06159 -13.62832 -13.29997 -13.01225 -12.96214 -12.70168 -12.54781 -12.39417 -12.27137 -12.04966 -11.80096 -11.44026 -11.34728 -11.14767 -10.70229 -10.50235 -10.05446 -9.92677 -9.07787 -8.84673 -6.49374 -0.09389 0.41472 0.58740 1.26237 1.46376 1.52289 1.71070 2.06427 2.41886 2.64194 2.78789 2.98178 3.37570 3.89036 3.99087 4.07819 4.27562 4.36034 4.37259 4.44896 4.46089 4.48248 4.76500 4.82284 4.89554 5.04377 5.06690 5.10219 5.11905 5.21157 5.25089 5.32958 5.37929 5.42555 5.48872 5.58692 5.66573 5.90851 5.96610 6.03425 6.41927 6.47035 6.67990 6.94417 7.28166 8.55552 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034678 B = 0.003281 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.239044 B = 8531.563565 C = 8975.778415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.139 4.139 3 C 0.250 3.750 4 H 0.038 0.962 5 C -0.621 4.621 6 H 0.035 0.965 7 C -0.004 4.004 8 N -0.925 5.925 9 Si 1.073 2.927 10 H -0.284 1.284 11 H -0.237 1.237 12 H -0.269 1.269 13 N -0.670 5.670 14 C 0.500 3.500 15 O -0.538 6.538 16 C 0.512 3.488 17 O -0.524 6.524 18 N -0.633 5.633 19 C 0.113 3.887 20 C -0.134 4.134 21 C -0.101 4.101 22 C -0.102 4.102 23 C -0.111 4.111 24 C -0.111 4.111 25 C -0.139 4.139 26 H 0.043 0.957 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.257 0.743 32 H 0.407 0.593 33 H 0.431 0.569 34 H 0.151 0.849 35 H 0.158 0.842 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.137 0.863 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.214 9.319 13.226 25.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.177 4.177 3 C 0.147 3.853 4 H 0.056 0.944 5 C -0.659 4.659 6 H 0.053 0.947 7 C -0.205 4.205 8 N -0.559 5.559 9 Si 0.894 3.106 10 H -0.209 1.209 11 H -0.161 1.161 12 H -0.194 1.194 13 N -0.319 5.319 14 C 0.280 3.720 15 O -0.416 6.416 16 C 0.294 3.706 17 O -0.400 6.400 18 N -0.280 5.280 19 C 0.020 3.980 20 C -0.154 4.154 21 C -0.119 4.119 22 C -0.103 4.103 23 C -0.167 4.167 24 C -0.130 4.130 25 C -0.159 4.159 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.242 0.758 33 H 0.271 0.729 34 H 0.168 0.832 35 H 0.175 0.825 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.155 0.845 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -20.061 8.761 11.608 24.778 hybrid contribution 1.050 0.469 1.560 1.938 sum -19.011 9.230 13.167 24.900 Atomic orbital electron populations 1.21800 0.95019 1.00965 1.01553 1.22284 0.95840 0.97664 1.01953 1.19012 0.93764 0.90097 0.82451 0.94404 1.22250 0.91304 1.48600 1.03753 0.94708 1.26976 0.97514 0.91653 1.04376 1.70980 1.08890 1.42662 1.33396 0.83724 0.75392 0.78987 0.72488 1.20939 1.16135 1.19436 1.46054 1.14583 1.53217 1.18025 1.19939 0.83480 0.80610 0.88002 1.90716 1.51412 1.59509 1.40005 1.20336 0.82869 0.79358 0.87993 1.90754 1.51645 1.57784 1.39788 1.43060 1.15161 1.49914 1.19853 1.17992 0.95351 0.95400 0.89234 1.21201 0.94252 1.01936 0.98018 1.21231 1.00550 0.96042 0.94119 1.20337 0.92891 0.98613 0.98416 1.20827 1.02860 0.99698 0.93334 1.21140 0.97234 0.99002 0.95587 1.21181 0.99226 0.97634 0.97889 0.93748 0.92990 0.92070 0.91451 0.92940 0.93370 0.75790 0.72943 0.83176 0.82452 0.90074 0.90082 0.91154 0.84473 0.87059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.88 8.51 71.98 0.61 -4.26 16 2 C -0.14 -5.84 5.29 30.59 0.16 -5.67 16 3 C 0.25 11.62 1.83 44.24 0.08 11.70 16 4 H 0.04 1.84 6.25 -2.39 -0.01 1.83 16 5 C -0.62 -33.94 9.01 25.60 0.23 -33.71 16 6 H 0.03 2.06 7.96 -2.91 -0.02 2.03 16 7 C 0.00 -0.25 5.31 84.66 0.45 0.20 16 8 N -0.92 -55.90 13.70 21.45 0.29 -55.61 16 9 Si 1.07 48.46 26.29 68.60 1.80 50.26 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.24 -9.48 5.69 99.48 0.57 -8.91 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 13 N -0.67 -27.71 5.01 -447.54 -2.24 -29.95 16 14 C 0.50 18.56 6.45 87.24 0.56 19.13 16 15 O -0.54 -20.63 13.62 -3.26 -0.04 -20.67 16 16 C 0.51 16.89 7.62 87.24 0.67 17.55 16 17 O -0.52 -19.36 14.16 -3.32 -0.05 -19.41 16 18 N -0.63 -16.55 5.32 -304.84 -1.62 -18.17 16 19 C 0.11 2.79 6.28 38.21 0.24 3.03 16 20 C -0.13 -2.44 9.96 22.40 0.22 -2.21 16 21 C -0.10 -1.53 9.69 22.25 0.22 -1.31 16 22 C -0.10 -1.67 5.88 -19.84 -0.12 -1.79 16 23 C -0.11 -1.11 10.01 71.24 0.71 -0.39 16 24 C -0.11 -2.31 9.69 22.25 0.22 -2.09 16 25 C -0.14 -3.68 8.65 22.40 0.19 -3.48 16 26 H 0.04 1.58 5.65 -2.39 -0.01 1.56 16 27 H 0.05 1.88 7.84 -2.39 -0.02 1.86 16 28 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.07 2.90 4.78 -2.39 -0.01 2.89 16 30 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.26 15.70 8.73 -92.71 -0.81 14.90 16 32 H 0.41 16.67 8.00 -92.71 -0.74 15.93 16 33 H 0.43 9.44 8.29 -92.71 -0.77 8.67 16 34 H 0.15 1.97 8.06 -2.92 -0.02 1.94 16 35 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 36 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.08 0.59 8.08 -2.39 -0.02 0.57 16 38 H 0.07 0.66 8.08 -2.39 -0.02 0.64 16 39 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 40 H 0.11 3.42 6.42 -2.91 -0.02 3.40 16 Total: -1.00 -66.24 330.87 1.98 -64.26 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: -0.61 Total: 32.62 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: 4.45 Total: -3.32 kcal Atomic # 7 Polarization: -100.16 SS G_CDS: -3.57 Total: -103.73 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -0.09 Total: -40.08 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 1.80 Total: 50.26 kcal Total: -66.24 1.98 -64.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132062218.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.018 kcal (2) G-P(sol) polarization free energy of solvation -66.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds