Wall clock time and date at job start Tue Mar 31 2020 06:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47387 * 2 1 4 4 H 1.09002 * 109.46928 * 303.56858 * 3 2 1 5 5 C 1.50694 * 109.47221 * 183.56773 * 3 2 1 6 6 H 1.07998 * 119.99923 * 245.81219 * 5 3 2 7 7 C 1.37875 * 120.00051 * 65.81066 * 5 3 2 8 8 N 1.31516 * 119.99942 * 199.62263 * 7 5 3 9 9 Si 1.86798 * 120.00009 * 19.62864 * 7 5 3 10 10 H 1.48505 * 109.47225 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.47220 * 299.99647 * 9 7 5 12 12 H 1.48499 * 109.47146 * 59.99931 * 9 7 5 13 13 N 1.46503 * 109.46760 * 63.56473 * 3 2 1 14 14 C 1.34775 * 120.00280 * 275.00018 * 13 3 2 15 15 O 1.21585 * 119.99850 * 0.02562 * 14 13 3 16 16 N 1.34775 * 119.99782 * 179.97438 * 14 13 3 17 17 C 1.39945 * 119.99588 * 184.79716 * 16 14 13 18 18 C 1.38887 * 120.05790 * 321.77329 * 17 16 14 19 19 C 1.38165 * 119.97208 * 179.76534 * 18 17 16 20 20 C 1.38044 * 120.00814 * 0.51322 * 19 18 17 21 21 C 1.38652 * 120.15162 * 359.74062 * 20 19 18 22 22 C 1.37858 * 120.11050 * 359.97438 * 21 20 19 23 23 C 1.51100 * 107.26932 * 180.02562 * 21 20 19 24 24 O 1.43938 * 105.94972 * 17.70003 * 23 21 20 25 25 C 1.43934 * 104.96087 * 331.52349 * 24 23 21 26 26 H 1.08997 * 109.47345 * 299.99936 * 1 2 3 27 27 H 1.09004 * 109.47087 * 60.00051 * 1 2 3 28 28 H 1.09008 * 109.46975 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47019 * 239.99729 * 2 1 3 30 30 H 1.08997 * 109.47232 * 120.00318 * 2 1 3 31 31 H 0.96996 * 120.00490 * 354.96213 * 8 7 5 32 32 H 0.97003 * 119.99449 * 95.00294 * 13 3 2 33 33 H 0.97004 * 120.00255 * 4.80425 * 16 14 13 34 34 H 1.07995 * 120.01582 * 0.02562 * 18 17 16 35 35 H 1.07997 * 119.99977 * 180.25323 * 19 18 17 36 36 H 1.08003 * 120.06427 * 180.02562 * 22 21 20 37 37 H 1.08998 * 110.15642 * 136.82365 * 23 21 20 38 38 H 1.08996 * 110.15227 * 258.58135 * 23 21 20 39 39 H 1.08996 * 110.15383 * 147.60270 * 25 24 23 40 40 H 1.08993 * 110.15638 * 269.28366 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6254 1.9744 -0.8563 5 6 3.5444 1.4434 -0.0884 6 1 4.1337 1.8091 0.7394 7 6 4.1684 0.9772 -1.2261 8 7 5.4313 0.6129 -1.1811 9 14 3.2201 0.8632 -2.8314 10 1 4.1110 0.3363 -3.8963 11 1 2.0615 -0.0495 -2.6582 12 1 2.7340 2.2126 -3.2161 13 7 1.6231 2.1078 1.2368 14 6 0.4035 2.6756 1.3185 15 8 -0.3509 2.6352 0.3659 16 7 0.0198 3.2871 2.4566 17 6 -1.2813 3.7883 2.5772 18 6 -1.8982 4.3910 1.4886 19 6 -3.1846 4.8809 1.6082 20 6 -3.8523 4.7807 2.8123 21 6 -3.2370 4.1842 3.9023 22 6 -1.9559 3.6883 3.7875 23 6 -4.2172 4.2302 5.0513 24 8 -5.5071 4.4752 4.4613 25 6 -5.2306 5.2125 3.2565 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 5.9441 0.7402 -0.3677 32 1 2.2249 2.1397 1.9970 33 1 0.6455 3.3800 3.1921 34 1 -1.3743 4.4730 0.5478 35 1 -3.6663 5.3459 0.7609 36 1 -1.4775 3.2235 4.6370 37 1 -4.2210 3.2771 5.5801 38 1 -3.9572 5.0385 5.7347 39 1 -5.9658 4.9685 2.4898 40 1 -5.2424 6.2831 3.4603 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158616065.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:25 Heat of formation + Delta-G solvation = -40.015503 kcal Electronic energy + Delta-G solvation = -22851.183266 eV Core-core repulsion = 19438.177671 eV Total energy + Delta-G solvation = -3413.005596 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.93501 -39.85839 -37.58575 -35.51131 -34.25895 -32.51886 -31.62923 -31.50398 -29.97804 -27.90343 -27.10508 -24.54789 -22.67845 -22.18653 -21.82410 -20.50480 -19.74996 -18.59252 -17.55696 -17.00461 -16.62360 -16.38438 -15.87194 -15.39237 -14.83072 -14.55068 -14.18233 -13.75821 -13.58042 -13.43482 -13.05822 -12.84025 -12.68848 -12.63144 -12.36319 -12.27863 -11.82763 -11.73106 -11.22374 -10.91348 -10.74198 -10.46917 -10.37012 -9.98823 -9.88280 -9.64492 -9.54129 -9.14659 -8.89182 -8.33268 -8.27009 -7.91007 -6.64252 -4.26486 1.15530 1.24937 2.95004 3.36541 3.42092 3.42317 3.57708 3.71641 3.79107 4.15456 4.38028 4.47266 4.68620 4.82893 5.10614 5.11073 5.12814 5.17836 5.29161 5.37019 5.53543 5.64286 5.81363 6.06253 6.08794 6.13155 6.14633 6.24190 6.31259 6.51317 6.55958 6.62842 6.77782 6.90579 6.98260 7.04796 7.12187 7.36556 7.43909 7.72169 8.19230 8.54114 8.68687 9.04154 9.42082 10.76757 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036078 B = 0.003378 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.913127 B = 8286.774012 C = 8468.085065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.137 4.137 3 C 0.265 3.735 4 H 0.042 0.958 5 C -0.621 4.621 6 H 0.061 0.939 7 C 0.042 3.958 8 N -0.894 5.894 9 Si 1.039 2.961 10 H -0.283 1.283 11 H -0.270 1.270 12 H -0.280 1.280 13 N -0.711 5.711 14 C 0.694 3.306 15 O -0.578 6.578 16 N -0.697 5.697 17 C 0.186 3.814 18 C -0.111 4.111 19 C -0.074 4.074 20 C -0.159 4.159 21 C -0.118 4.118 22 C -0.126 4.126 23 C 0.095 3.905 24 O -0.364 6.364 25 C 0.095 3.905 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.029 0.971 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.269 0.731 32 H 0.390 0.610 33 H 0.404 0.596 34 H 0.146 0.854 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.927 8.096 11.006 20.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.176 4.176 3 C 0.162 3.838 4 H 0.060 0.940 5 C -0.659 4.659 6 H 0.079 0.921 7 C -0.166 4.166 8 N -0.527 5.527 9 Si 0.867 3.133 10 H -0.209 1.209 11 H -0.196 1.196 12 H -0.206 1.206 13 N -0.362 5.362 14 C 0.394 3.606 15 O -0.455 6.455 16 N -0.345 5.345 17 C 0.090 3.910 18 C -0.132 4.132 19 C -0.092 4.092 20 C -0.161 4.161 21 C -0.119 4.119 22 C -0.147 4.147 23 C 0.018 3.982 24 O -0.283 6.283 25 C 0.019 3.981 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.223 0.777 33 H 0.239 0.761 34 H 0.164 0.836 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.568 7.404 8.568 20.068 hybrid contribution 0.881 0.569 2.354 2.577 sum -15.687 7.972 10.922 20.711 Atomic orbital electron populations 1.21859 0.97301 0.98764 1.01932 1.22325 0.93813 0.99777 1.01685 1.18969 0.95131 0.88064 0.81663 0.94029 1.22049 0.89518 1.49677 1.04686 0.92066 1.25669 0.97039 0.91956 1.01906 1.70887 1.09923 1.39408 1.32460 0.84097 0.75687 0.77708 0.75831 1.20852 1.19613 1.20595 1.45567 1.13667 1.58018 1.18938 1.16097 0.83401 0.78628 0.82426 1.90893 1.53393 1.64965 1.36289 1.42794 1.11988 1.61243 1.18498 1.17379 0.84903 0.94613 0.94146 1.21341 0.95337 0.96733 0.99750 1.20271 0.94024 0.99177 0.95776 1.20933 0.97413 1.02737 0.94970 1.20673 0.94980 1.00003 0.96238 1.20034 0.93543 1.03377 0.97728 1.21697 0.81098 1.02120 0.93268 1.89061 1.26034 1.75769 1.37397 1.21678 0.93318 0.95874 0.87213 0.93517 0.92886 0.95201 0.91459 0.93127 0.92048 0.77703 0.76113 0.83602 0.85549 0.85596 0.88639 0.90627 0.88751 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.49 37.16 0.32 -2.56 16 2 C -0.14 -3.03 5.32 -26.73 -0.14 -3.17 16 3 C 0.27 6.16 1.84 -69.08 -0.13 6.03 16 4 H 0.04 1.05 6.19 -51.93 -0.32 0.73 16 5 C -0.62 -16.36 8.98 -34.44 -0.31 -16.67 16 6 H 0.06 1.68 7.96 -52.49 -0.42 1.26 16 7 C 0.04 1.14 5.28 -17.82 -0.09 1.05 16 8 N -0.89 -26.15 13.70 55.43 0.76 -25.39 16 9 Si 1.04 24.69 26.37 -169.99 -4.48 20.21 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.04 5.84 56.52 0.33 -5.71 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.71 -13.74 5.01 -59.81 -0.30 -14.04 16 14 C 0.69 12.77 6.90 -86.92 -0.60 12.17 16 15 O -0.58 -12.30 11.10 5.29 0.06 -12.24 16 16 N -0.70 -9.85 5.34 -14.21 -0.08 -9.93 16 17 C 0.19 2.59 6.24 -83.66 -0.52 2.07 16 18 C -0.11 -1.62 8.68 -39.37 -0.34 -1.96 16 19 C -0.07 -0.90 10.04 -39.68 -0.40 -1.30 16 20 C -0.16 -1.85 6.32 -104.34 -0.66 -2.51 16 21 C -0.12 -1.35 6.32 -104.41 -0.66 -2.01 16 22 C -0.13 -1.48 9.96 -39.47 -0.39 -1.87 16 23 C 0.09 0.89 7.63 36.20 0.28 1.17 16 24 O -0.36 -4.07 11.72 -35.23 -0.41 -4.49 16 25 C 0.10 0.92 7.63 36.21 0.28 1.19 16 26 H 0.05 0.95 5.68 -51.93 -0.29 0.66 16 27 H 0.05 1.13 7.76 -51.93 -0.40 0.72 16 28 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 29 H 0.07 1.55 5.08 -51.92 -0.26 1.29 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.27 7.78 8.73 -40.82 -0.36 7.43 16 32 H 0.39 6.63 8.54 -40.82 -0.35 6.28 16 33 H 0.40 4.38 8.84 -40.82 -0.36 4.02 16 34 H 0.15 2.40 6.46 -52.49 -0.34 2.06 16 35 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 323.13 15.07 4.87 4.87 Total: -1.00 -31.29 323.13 -8.32 -39.61 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -5.36 Total: 9.77 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -3.38 Total: -8.36 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.38 Total: -49.36 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.35 Total: -16.73 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -4.48 Total: 20.21 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.29 -8.32 -39.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158616065.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.406 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds