Wall clock time and date at job start Tue Mar 31 2020 06:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47387 * 2 1 4 4 H 1.09002 * 109.46928 * 303.56858 * 3 2 1 5 5 C 1.50694 * 109.47221 * 183.56773 * 3 2 1 6 6 H 1.07998 * 119.99923 * 245.81219 * 5 3 2 7 7 C 1.37875 * 120.00051 * 65.81066 * 5 3 2 8 8 N 1.31516 * 119.99942 * 199.62263 * 7 5 3 9 9 Si 1.86798 * 120.00009 * 19.62864 * 7 5 3 10 10 H 1.48505 * 109.47225 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.47220 * 299.99647 * 9 7 5 12 12 H 1.48499 * 109.47146 * 59.99931 * 9 7 5 13 13 N 1.46503 * 109.46760 * 63.56473 * 3 2 1 14 14 C 1.34775 * 120.00280 * 275.00018 * 13 3 2 15 15 O 1.21585 * 119.99850 * 0.02562 * 14 13 3 16 16 N 1.34775 * 119.99782 * 179.97438 * 14 13 3 17 17 C 1.39945 * 119.99588 * 184.79716 * 16 14 13 18 18 C 1.38887 * 120.05790 * 321.77329 * 17 16 14 19 19 C 1.38165 * 119.97208 * 179.76534 * 18 17 16 20 20 C 1.38044 * 120.00814 * 0.51322 * 19 18 17 21 21 C 1.38652 * 120.15162 * 359.74062 * 20 19 18 22 22 C 1.37858 * 120.11050 * 359.97438 * 21 20 19 23 23 C 1.51100 * 107.26932 * 180.02562 * 21 20 19 24 24 O 1.43938 * 105.94972 * 17.70003 * 23 21 20 25 25 C 1.43934 * 104.96087 * 331.52349 * 24 23 21 26 26 H 1.08997 * 109.47345 * 299.99936 * 1 2 3 27 27 H 1.09004 * 109.47087 * 60.00051 * 1 2 3 28 28 H 1.09008 * 109.46975 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47019 * 239.99729 * 2 1 3 30 30 H 1.08997 * 109.47232 * 120.00318 * 2 1 3 31 31 H 0.96996 * 120.00490 * 354.96213 * 8 7 5 32 32 H 0.97003 * 119.99449 * 95.00294 * 13 3 2 33 33 H 0.97004 * 120.00255 * 4.80425 * 16 14 13 34 34 H 1.07995 * 120.01582 * 0.02562 * 18 17 16 35 35 H 1.07997 * 119.99977 * 180.25323 * 19 18 17 36 36 H 1.08003 * 120.06427 * 180.02562 * 22 21 20 37 37 H 1.08998 * 110.15642 * 136.82365 * 23 21 20 38 38 H 1.08996 * 110.15227 * 258.58135 * 23 21 20 39 39 H 1.08996 * 110.15383 * 147.60270 * 25 24 23 40 40 H 1.08993 * 110.15638 * 269.28366 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6254 1.9744 -0.8563 5 6 3.5444 1.4434 -0.0884 6 1 4.1337 1.8091 0.7394 7 6 4.1684 0.9772 -1.2261 8 7 5.4313 0.6129 -1.1811 9 14 3.2201 0.8632 -2.8314 10 1 4.1110 0.3363 -3.8963 11 1 2.0615 -0.0495 -2.6582 12 1 2.7340 2.2126 -3.2161 13 7 1.6231 2.1078 1.2368 14 6 0.4035 2.6756 1.3185 15 8 -0.3509 2.6352 0.3659 16 7 0.0198 3.2871 2.4566 17 6 -1.2813 3.7883 2.5772 18 6 -1.8982 4.3910 1.4886 19 6 -3.1846 4.8809 1.6082 20 6 -3.8523 4.7807 2.8123 21 6 -3.2370 4.1842 3.9023 22 6 -1.9559 3.6883 3.7875 23 6 -4.2172 4.2302 5.0513 24 8 -5.5071 4.4752 4.4613 25 6 -5.2306 5.2125 3.2565 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 5.9441 0.7402 -0.3677 32 1 2.2249 2.1397 1.9970 33 1 0.6455 3.3800 3.1921 34 1 -1.3743 4.4730 0.5478 35 1 -3.6663 5.3459 0.7609 36 1 -1.4775 3.2235 4.6370 37 1 -4.2210 3.2771 5.5801 38 1 -3.9572 5.0385 5.7347 39 1 -5.9658 4.9685 2.4898 40 1 -5.2424 6.2831 3.4603 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158616065.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:24 Heat of formation + Delta-G solvation = -62.012248 kcal Electronic energy + Delta-G solvation = -22852.137117 eV Core-core repulsion = 19438.177671 eV Total energy + Delta-G solvation = -3413.959446 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.96272 -41.08189 -38.69328 -37.09410 -35.54778 -34.48575 -33.12250 -32.50727 -31.06206 -29.16554 -28.50914 -25.49915 -24.38632 -23.56479 -22.72046 -21.84313 -21.39814 -20.23263 -19.11294 -18.30897 -17.48841 -17.25371 -16.97116 -16.89018 -16.25512 -15.72923 -15.34676 -15.15366 -14.94401 -14.58331 -14.53258 -14.37870 -14.20404 -13.81157 -13.64703 -13.54676 -13.18527 -12.74001 -12.70082 -12.49404 -12.31321 -12.16080 -11.78902 -11.52850 -11.31393 -11.20691 -11.05772 -10.72830 -10.43928 -9.90902 -9.79894 -9.00843 -8.80405 -6.44169 0.16925 0.31157 1.46211 1.50392 1.64431 1.72731 2.10830 2.40984 2.69938 2.98636 2.99217 3.21774 3.40521 3.67350 3.94898 4.28171 4.31225 4.33702 4.39753 4.45709 4.47819 4.53326 4.62211 4.69203 4.79039 4.82658 4.92181 5.08604 5.15998 5.19582 5.25684 5.29439 5.33523 5.46678 5.55212 5.61161 5.66559 5.74548 5.98638 6.00289 6.12672 6.53348 7.11625 7.28768 7.59436 8.58555 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036078 B = 0.003378 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.913127 B = 8286.774012 C = 8468.085065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.133 4.133 3 C 0.272 3.728 4 H 0.023 0.977 5 C -0.616 4.616 6 H 0.041 0.959 7 C -0.002 4.002 8 N -0.925 5.925 9 Si 1.070 2.930 10 H -0.282 1.282 11 H -0.248 1.248 12 H -0.274 1.274 13 N -0.713 5.713 14 C 0.696 3.304 15 O -0.607 6.607 16 N -0.680 5.680 17 C 0.162 3.838 18 C -0.134 4.134 19 C -0.078 4.078 20 C -0.162 4.162 21 C -0.123 4.123 22 C -0.119 4.119 23 C 0.094 3.906 24 O -0.381 6.381 25 C 0.095 3.905 26 H 0.043 0.957 27 H 0.040 0.960 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.259 0.741 32 H 0.401 0.599 33 H 0.420 0.580 34 H 0.119 0.881 35 H 0.144 0.856 36 H 0.152 0.848 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.300 8.372 12.462 23.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.172 4.172 3 C 0.167 3.833 4 H 0.041 0.959 5 C -0.654 4.654 6 H 0.060 0.940 7 C -0.203 4.203 8 N -0.560 5.560 9 Si 0.892 3.108 10 H -0.208 1.208 11 H -0.173 1.173 12 H -0.199 1.199 13 N -0.365 5.365 14 C 0.396 3.604 15 O -0.487 6.487 16 N -0.329 5.329 17 C 0.067 3.933 18 C -0.154 4.154 19 C -0.096 4.096 20 C -0.163 4.163 21 C -0.124 4.124 22 C -0.139 4.139 23 C 0.018 3.982 24 O -0.300 6.300 25 C 0.019 3.981 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.236 0.764 33 H 0.258 0.742 34 H 0.137 0.863 35 H 0.161 0.839 36 H 0.169 0.831 37 H 0.128 0.872 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.959 7.706 10.094 22.820 hybrid contribution 1.549 0.585 2.020 2.612 sum -17.410 8.291 12.113 22.773 Atomic orbital electron populations 1.21715 0.95656 1.00024 1.01215 1.22212 0.95146 0.98510 1.01332 1.18623 0.92872 0.89080 0.82740 0.95884 1.22236 0.91330 1.48149 1.03703 0.94041 1.26748 0.97104 0.91712 1.04740 1.70986 1.10973 1.41889 1.32113 0.83707 0.75538 0.78543 0.73002 1.20795 1.17251 1.19918 1.45248 1.14581 1.58448 1.18204 1.16102 0.82619 0.78500 0.83134 1.90877 1.54082 1.65971 1.37749 1.42463 1.12687 1.60187 1.17592 1.17560 0.84849 0.95826 0.95093 1.21255 0.96504 0.98544 0.99122 1.20409 0.93294 0.98979 0.96934 1.21258 0.98441 1.01964 0.94623 1.21047 0.95047 0.99131 0.97155 1.20212 0.93624 1.02657 0.97421 1.21880 0.79806 1.03828 0.92638 1.89050 1.26898 1.76159 1.37883 1.21834 0.92247 0.96867 0.87139 0.93752 0.94084 0.92852 0.92471 0.92806 0.93163 0.76444 0.74200 0.86267 0.83858 0.83065 0.87189 0.88422 0.87554 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.04 8.49 71.98 0.61 -4.43 16 2 C -0.13 -5.74 5.32 30.59 0.16 -5.58 16 3 C 0.27 12.58 1.84 44.24 0.08 12.67 16 4 H 0.02 1.18 6.19 -2.39 -0.01 1.16 16 5 C -0.62 -32.82 8.98 25.60 0.23 -32.59 16 6 H 0.04 2.32 7.96 -2.91 -0.02 2.30 16 7 C 0.00 -0.09 5.28 84.65 0.45 0.36 16 8 N -0.92 -55.12 13.70 21.45 0.29 -54.83 16 9 Si 1.07 49.77 26.37 68.60 1.81 51.58 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.25 -10.59 5.84 99.48 0.58 -10.01 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 13 N -0.71 -27.28 5.01 -461.42 -2.31 -29.60 16 14 C 0.70 25.32 6.90 179.06 1.24 26.56 16 15 O -0.61 -25.93 11.10 -3.98 -0.04 -25.97 16 16 N -0.68 -18.52 5.34 -317.12 -1.69 -20.22 16 17 C 0.16 4.34 6.24 38.17 0.24 4.58 16 18 C -0.13 -3.87 8.68 22.41 0.19 -3.68 16 19 C -0.08 -1.82 10.04 22.21 0.22 -1.59 16 20 C -0.16 -3.38 6.32 -19.68 -0.12 -3.51 16 21 C -0.12 -2.47 6.32 -19.73 -0.12 -2.59 16 22 C -0.12 -2.50 9.96 22.34 0.22 -2.27 16 23 C 0.09 1.46 7.63 71.36 0.54 2.00 16 24 O -0.38 -7.34 11.72 -148.98 -1.75 -9.08 16 25 C 0.09 1.55 7.63 71.37 0.54 2.09 16 26 H 0.04 1.74 5.68 -2.39 -0.01 1.73 16 27 H 0.04 1.69 7.76 -2.39 -0.02 1.67 16 28 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 29 H 0.06 2.57 5.08 -2.38 -0.01 2.56 16 30 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.26 15.43 8.73 -92.71 -0.81 14.62 16 32 H 0.40 13.43 8.54 -92.71 -0.79 12.64 16 33 H 0.42 8.45 8.84 -92.71 -0.82 7.63 16 34 H 0.12 4.07 6.46 -2.91 -0.02 4.05 16 35 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 36 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 37 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.11 1.47 8.14 -2.39 -0.02 1.46 16 40 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -67.77 323.13 0.10 -67.67 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: -0.69 Total: 28.44 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: 4.49 Total: -8.00 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -3.71 Total: -104.64 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -1.79 Total: -35.06 kcal Atomic # 14 Polarization: 49.77 SS G_CDS: 1.81 Total: 51.58 kcal Total: -67.77 0.10 -67.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158616065.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.656 kcal (2) G-P(sol) polarization free energy of solvation -67.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds