Wall clock time and date at job start Tue Mar 31 2020 06:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50707 * 119.99826 * 2 1 4 4 C 1.53002 * 109.47099 * 125.00134 * 3 2 1 5 5 C 1.50699 * 109.46873 * 180.02562 * 4 3 2 6 6 O 1.21278 * 120.00056 * 359.97438 * 5 4 3 7 7 N 1.34774 * 119.99823 * 179.97438 * 5 4 3 8 8 C 1.39581 * 119.99990 * 179.97438 * 7 5 4 9 9 N 1.32276 * 119.72745 * 0.26696 * 8 7 5 10 10 C 1.31949 * 121.69079 * 180.30946 * 9 8 7 11 11 C 1.38093 * 120.95747 * 359.70619 * 10 9 8 12 12 C 1.38775 * 119.35013 * 359.97438 * 11 10 9 13 13 C 1.38801 * 118.45054 * 359.97438 * 12 11 10 14 14 O 1.35973 * 120.50125 * 179.97438 * 13 12 11 15 15 C 1.42906 * 116.99587 * 0.02562 * 14 13 12 16 16 C 1.53006 * 109.46748 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46866 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99962 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00270 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99834 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00496 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47325 * 59.99531 * 21 19 17 23 23 H 1.48496 * 109.47425 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47183 * 299.99726 * 21 19 17 25 25 H 1.07993 * 120.00232 * 180.02562 * 1 2 3 26 26 H 1.07999 * 120.00001 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.00464 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47282 * 4.99565 * 3 2 1 29 29 H 1.08996 * 109.46591 * 244.99447 * 3 2 1 30 30 H 1.08995 * 109.47518 * 59.99576 * 4 3 2 31 31 H 1.09002 * 109.47042 * 299.99561 * 4 3 2 32 32 H 0.97000 * 120.00150 * 359.97438 * 7 5 4 33 33 H 1.08000 * 119.52722 * 179.72569 * 10 9 8 34 34 H 1.07997 * 120.32692 * 179.97438 * 11 10 9 35 35 H 1.08002 * 120.77560 * 180.02562 * 12 11 10 36 36 H 1.09000 * 109.47490 * 59.99648 * 15 14 13 37 37 H 1.09001 * 109.47232 * 299.99002 * 15 14 13 38 38 H 1.08993 * 109.46955 * 299.99993 * 16 15 14 39 39 H 1.09000 * 109.47050 * 59.99822 * 16 15 14 40 40 H 0.96992 * 120.00032 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.7880 2.6386 1.1819 6 8 3.5695 3.4649 0.3216 7 7 4.7043 2.8877 2.1384 8 6 5.4021 4.0966 2.1384 9 7 5.1561 4.9960 1.2002 10 6 5.7970 6.1486 1.1598 11 6 6.7519 6.4640 2.1063 12 6 7.0383 5.5531 3.1133 13 6 6.3480 4.3491 3.1318 14 8 6.5958 3.4262 4.0991 15 6 7.5855 3.7591 5.0749 16 6 7.7244 2.6081 6.0734 17 6 8.7684 2.9588 7.1020 18 1 9.2818 3.9075 7.0486 19 6 9.0689 2.0682 8.1107 20 7 8.4441 0.9127 8.1755 21 14 10.3625 2.5031 9.3861 22 1 9.9531 3.7356 10.1060 23 1 10.4975 1.3861 10.3552 24 1 11.6652 2.7336 8.7113 25 1 -0.5400 -0.9352 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9352 0.0004 28 1 1.3586 2.1317 0.0895 29 1 2.6213 1.4026 -0.9313 30 1 3.7399 0.5067 1.0921 31 1 2.4772 1.2357 2.1130 32 1 4.8788 2.2270 2.8268 33 1 5.5715 6.8559 0.3754 34 1 7.2706 7.4102 2.0632 35 1 7.7805 5.7762 3.8655 36 1 7.2850 4.6638 5.6033 37 1 8.5416 3.9281 4.5796 38 1 6.7682 2.4394 6.5686 39 1 8.0247 1.7031 5.5453 40 1 8.6552 0.2863 8.8852 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171057304.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:00 Heat of formation + Delta-G solvation = -23.535768 kcal Electronic energy + Delta-G solvation = -21886.162794 eV Core-core repulsion = 18473.871814 eV Total energy + Delta-G solvation = -3412.290981 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.87471 -39.32211 -37.78846 -35.65613 -34.72910 -33.48482 -31.75340 -31.10274 -30.38031 -28.99086 -25.49346 -25.03887 -23.24841 -22.64737 -21.01265 -20.13983 -19.98672 -18.33139 -17.48530 -17.13598 -16.17282 -16.10871 -15.76853 -15.59647 -15.05496 -14.82838 -14.58529 -14.19575 -13.99671 -13.89629 -13.27653 -12.87185 -12.70575 -12.41141 -12.31439 -12.02546 -11.93205 -11.26164 -11.22901 -11.08340 -10.98753 -10.70145 -10.69600 -10.23346 -10.05782 -9.78885 -9.58924 -9.43468 -9.21822 -9.00984 -8.53048 -7.66335 -6.18948 -4.24062 1.20536 1.44539 2.03545 2.73157 2.93991 3.23052 3.27759 3.28829 3.52314 4.01027 4.32712 4.35494 4.70491 4.71737 4.92492 4.94781 4.99923 5.10386 5.15130 5.17837 5.30269 5.44274 5.46685 5.62409 5.76866 5.85073 5.88764 5.96088 6.05949 6.18287 6.35525 6.40839 6.52966 6.54619 6.63051 7.27972 7.33450 7.51336 7.62795 7.84229 8.07074 8.13223 8.36847 8.80927 9.40909 10.92453 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014651 B = 0.003272 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.738777 B = 8554.534877 C =10398.157765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.154 4.154 3 C -0.079 4.079 4 C -0.136 4.136 5 C 0.503 3.497 6 O -0.483 6.483 7 N -0.653 5.653 8 C 0.328 3.672 9 N -0.444 5.444 10 C 0.074 3.926 11 C -0.160 4.160 12 C -0.148 4.148 13 C 0.067 3.933 14 O -0.316 6.316 15 C 0.066 3.934 16 C 0.027 3.973 17 C -0.529 4.529 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.889 5.889 21 Si 0.899 3.101 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.110 0.890 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.424 0.576 33 H 0.156 0.844 34 H 0.134 0.866 35 H 0.145 0.855 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.491 2.982 -13.675 16.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.172 4.172 3 C -0.116 4.116 4 C -0.176 4.176 5 C 0.289 3.711 6 O -0.353 6.353 7 N -0.302 5.302 8 C 0.095 3.905 9 N -0.159 5.159 10 C -0.082 4.082 11 C -0.182 4.182 12 C -0.175 4.175 13 C 0.015 3.985 14 O -0.228 6.228 15 C -0.008 4.008 16 C -0.010 4.010 17 C -0.567 4.567 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.527 5.527 21 Si 0.726 3.274 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.128 0.872 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.262 0.738 33 H 0.174 0.826 34 H 0.152 0.848 35 H 0.162 0.838 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.047 0.953 39 H 0.046 0.954 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.432 2.955 -14.800 18.347 hybrid contribution 1.700 0.202 1.930 2.580 sum -8.732 3.158 -12.870 15.870 Atomic orbital electron populations 1.23876 0.95996 1.01864 1.01349 1.22982 0.96093 0.98389 0.99705 1.20506 0.97755 0.95462 0.97914 1.21649 0.99125 0.95239 1.01559 1.20927 0.79615 0.89418 0.81155 1.90783 1.62663 1.46875 1.34996 1.43563 1.38792 1.16731 1.31068 1.17852 0.92456 0.88588 0.91623 1.67624 1.25249 1.01967 1.21108 1.22412 0.93851 0.93311 0.98652 1.21891 0.99988 1.00515 0.95778 1.21612 1.01577 0.93267 1.01041 1.19612 0.96519 0.91093 0.91263 1.86099 1.58808 1.40803 1.37127 1.23399 0.87750 1.01861 0.87784 1.19119 0.98126 0.92045 0.91710 1.20910 1.21638 1.03298 1.10900 0.92394 1.24977 0.96456 0.94836 0.97803 1.69952 1.41551 1.07971 1.33214 0.86540 0.81743 0.78075 0.80993 1.20062 1.21070 1.20059 0.88528 0.88542 0.87220 0.90658 0.90120 0.88372 0.88419 0.73780 0.82649 0.84804 0.83757 0.92952 0.92948 0.95349 0.95358 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.51 14.32 29.02 0.42 -1.10 16 2 C -0.15 -1.26 9.52 -36.02 -0.34 -1.60 16 3 C -0.08 -0.76 4.95 -27.88 -0.14 -0.89 16 4 C -0.14 -1.29 5.68 -27.88 -0.16 -1.45 16 5 C 0.50 6.95 7.79 -10.99 -0.09 6.87 16 6 O -0.48 -8.31 14.24 5.56 0.08 -8.23 16 7 N -0.65 -9.43 5.39 -11.29 -0.06 -9.49 16 8 C 0.33 5.45 7.45 -154.43 -1.15 4.30 16 9 N -0.44 -7.47 7.88 -12.22 -0.10 -7.57 16 10 C 0.07 1.02 11.17 -17.55 -0.20 0.82 16 11 C -0.16 -2.01 10.10 -39.44 -0.40 -2.41 16 12 C -0.15 -2.17 9.14 -39.17 -0.36 -2.52 16 13 C 0.07 1.11 6.72 -38.91 -0.26 0.85 16 14 O -0.32 -5.79 9.39 -19.66 -0.18 -5.97 16 15 C 0.07 1.29 4.70 37.16 0.17 1.47 16 16 C 0.03 0.66 5.34 -27.88 -0.15 0.52 16 17 C -0.53 -14.08 9.11 -34.44 -0.31 -14.39 16 18 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -25.45 13.29 55.43 0.74 -24.72 16 21 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H 0.10 0.63 8.06 -52.49 -0.42 0.21 16 26 H 0.10 0.73 7.84 -52.49 -0.41 0.32 16 27 H 0.11 0.78 8.06 -52.49 -0.42 0.35 16 28 H 0.07 0.79 7.75 -51.93 -0.40 0.39 16 29 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.42 5.39 8.04 -40.82 -0.33 5.07 16 33 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.14 1.95 6.44 -52.49 -0.34 1.61 16 36 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 37 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 346.90 15.07 5.23 5.23 Total: -1.00 -31.99 346.90 -8.00 -39.99 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.62 Total: 3.15 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -3.06 Total: -7.96 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.58 Total: -41.78 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.11 Total: -14.20 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.99 -8.00 -39.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171057304.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.456 kcal (2) G-P(sol) polarization free energy of solvation -31.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds