Wall clock time and date at job start Tue Mar 31 2020 06:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50707 * 119.99826 * 2 1 4 4 C 1.53002 * 109.47099 * 125.00134 * 3 2 1 5 5 C 1.50699 * 109.46873 * 180.02562 * 4 3 2 6 6 O 1.21278 * 120.00056 * 359.97438 * 5 4 3 7 7 N 1.34774 * 119.99823 * 179.97438 * 5 4 3 8 8 C 1.39581 * 119.99990 * 179.97438 * 7 5 4 9 9 N 1.32276 * 119.72745 * 0.26696 * 8 7 5 10 10 C 1.31949 * 121.69079 * 180.30946 * 9 8 7 11 11 C 1.38093 * 120.95747 * 359.70619 * 10 9 8 12 12 C 1.38775 * 119.35013 * 359.97438 * 11 10 9 13 13 C 1.38801 * 118.45054 * 359.97438 * 12 11 10 14 14 O 1.35973 * 120.50125 * 179.97438 * 13 12 11 15 15 C 1.42906 * 116.99587 * 0.02562 * 14 13 12 16 16 C 1.53006 * 109.46748 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46866 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99962 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00270 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99834 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00496 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47325 * 59.99531 * 21 19 17 23 23 H 1.48496 * 109.47425 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47183 * 299.99726 * 21 19 17 25 25 H 1.07993 * 120.00232 * 180.02562 * 1 2 3 26 26 H 1.07999 * 120.00001 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.00464 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47282 * 4.99565 * 3 2 1 29 29 H 1.08996 * 109.46591 * 244.99447 * 3 2 1 30 30 H 1.08995 * 109.47518 * 59.99576 * 4 3 2 31 31 H 1.09002 * 109.47042 * 299.99561 * 4 3 2 32 32 H 0.97000 * 120.00150 * 359.97438 * 7 5 4 33 33 H 1.08000 * 119.52722 * 179.72569 * 10 9 8 34 34 H 1.07997 * 120.32692 * 179.97438 * 11 10 9 35 35 H 1.08002 * 120.77560 * 180.02562 * 12 11 10 36 36 H 1.09000 * 109.47490 * 59.99648 * 15 14 13 37 37 H 1.09001 * 109.47232 * 299.99002 * 15 14 13 38 38 H 1.08993 * 109.46955 * 299.99993 * 16 15 14 39 39 H 1.09000 * 109.47050 * 59.99822 * 16 15 14 40 40 H 0.96992 * 120.00032 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.7880 2.6386 1.1819 6 8 3.5695 3.4649 0.3216 7 7 4.7043 2.8877 2.1384 8 6 5.4021 4.0966 2.1384 9 7 5.1561 4.9960 1.2002 10 6 5.7970 6.1486 1.1598 11 6 6.7519 6.4640 2.1063 12 6 7.0383 5.5531 3.1133 13 6 6.3480 4.3491 3.1318 14 8 6.5958 3.4262 4.0991 15 6 7.5855 3.7591 5.0749 16 6 7.7244 2.6081 6.0734 17 6 8.7684 2.9588 7.1020 18 1 9.2818 3.9075 7.0486 19 6 9.0689 2.0682 8.1107 20 7 8.4441 0.9127 8.1755 21 14 10.3625 2.5031 9.3861 22 1 9.9531 3.7356 10.1060 23 1 10.4975 1.3861 10.3552 24 1 11.6652 2.7336 8.7113 25 1 -0.5400 -0.9352 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9352 0.0004 28 1 1.3586 2.1317 0.0895 29 1 2.6213 1.4026 -0.9313 30 1 3.7399 0.5067 1.0921 31 1 2.4772 1.2357 2.1130 32 1 4.8788 2.2270 2.8268 33 1 5.5715 6.8559 0.3754 34 1 7.2706 7.4102 2.0632 35 1 7.7805 5.7762 3.8655 36 1 7.2850 4.6638 5.6033 37 1 8.5416 3.9281 4.5796 38 1 6.7682 2.4394 6.5686 39 1 8.0247 1.7031 5.5453 40 1 8.6552 0.2863 8.8852 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171057304.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:00 Heat of formation + Delta-G solvation = -42.369988 kcal Electronic energy + Delta-G solvation = -21886.979507 eV Core-core repulsion = 18473.871814 eV Total energy + Delta-G solvation = -3413.107694 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.03919 -40.47966 -39.10185 -36.43507 -35.86030 -35.43595 -32.94133 -32.42943 -31.64075 -30.19265 -27.16984 -26.06845 -24.60286 -23.74969 -22.64459 -21.25062 -20.65073 -19.60104 -18.84311 -18.23269 -18.01275 -17.23995 -16.98193 -16.76471 -16.46133 -16.01504 -15.79186 -15.25559 -15.11294 -15.04980 -14.36865 -14.29365 -14.13149 -13.64255 -13.49720 -13.30806 -13.08005 -12.80851 -12.72314 -12.45113 -12.01829 -11.89134 -11.85569 -11.70366 -11.63897 -11.44529 -11.31071 -10.59758 -10.41039 -10.29222 -10.10874 -8.85860 -8.25248 -6.37854 0.08582 0.28310 1.39006 1.42890 1.45399 1.53245 1.66672 1.91291 2.11237 2.44708 2.87292 3.09966 3.37457 3.67769 3.85354 3.94998 4.02479 4.12522 4.18084 4.29325 4.33132 4.40213 4.46646 4.47326 4.67349 4.74823 4.92585 4.96613 5.08131 5.13288 5.20543 5.29453 5.31388 5.50898 5.53222 5.73663 5.77439 5.91775 6.08245 6.22295 6.33269 6.76813 6.94450 7.28095 7.32180 8.87156 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014651 B = 0.003272 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.738777 B = 8554.534877 C =10398.157765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.160 4.160 3 C -0.075 4.075 4 C -0.127 4.127 5 C 0.500 3.500 6 O -0.521 6.521 7 N -0.654 5.654 8 C 0.309 3.691 9 N -0.475 5.475 10 C 0.072 3.928 11 C -0.146 4.146 12 C -0.149 4.149 13 C 0.040 3.960 14 O -0.328 6.328 15 C 0.084 3.916 16 C 0.031 3.969 17 C -0.546 4.546 18 H 0.070 0.930 19 C 0.005 3.995 20 N -0.929 5.929 21 Si 0.970 3.030 22 H -0.265 1.265 23 H -0.285 1.285 24 H -0.265 1.265 25 H 0.111 0.889 26 H 0.094 0.906 27 H 0.124 0.876 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.120 0.880 31 H 0.114 0.886 32 H 0.429 0.571 33 H 0.186 0.814 34 H 0.175 0.825 35 H 0.157 0.843 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.002 0.998 39 H 0.002 0.998 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.727 4.227 -13.712 16.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.178 4.178 3 C -0.113 4.113 4 C -0.166 4.166 5 C 0.288 3.712 6 O -0.394 6.394 7 N -0.303 5.303 8 C 0.077 3.923 9 N -0.190 5.190 10 C -0.084 4.084 11 C -0.166 4.166 12 C -0.176 4.176 13 C -0.010 4.010 14 O -0.241 6.241 15 C 0.009 3.991 16 C -0.007 4.007 17 C -0.584 4.584 18 H 0.089 0.911 19 C -0.194 4.194 20 N -0.568 5.568 21 Si 0.794 3.206 22 H -0.190 1.190 23 H -0.210 1.210 24 H -0.190 1.190 25 H 0.130 0.870 26 H 0.112 0.888 27 H 0.142 0.858 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.138 0.862 31 H 0.133 0.867 32 H 0.268 0.732 33 H 0.203 0.797 34 H 0.193 0.807 35 H 0.174 0.826 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.673 4.199 -14.842 18.207 hybrid contribution 1.407 -0.104 1.835 2.315 sum -8.266 4.096 -13.007 15.946 Atomic orbital electron populations 1.24045 0.96008 1.02523 1.00443 1.22988 0.96248 0.98049 1.00465 1.20434 0.97442 0.95980 0.97399 1.21696 0.99204 0.93368 1.02352 1.21681 0.79072 0.90302 0.80156 1.90750 1.63838 1.48457 1.36385 1.43699 1.38748 1.16457 1.31348 1.18088 0.92988 0.89367 0.91866 1.67685 1.26511 1.03182 1.21630 1.23059 0.93246 0.92748 0.99392 1.22275 0.98997 1.01360 0.94012 1.21912 1.01205 0.92739 1.01748 1.19766 0.97989 0.91904 0.91369 1.86024 1.58700 1.41816 1.37606 1.22957 0.88856 0.99776 0.87486 1.18936 0.96330 0.92997 0.92410 1.21375 1.21928 1.03769 1.11304 0.91134 1.25952 0.98682 0.94660 1.00133 1.70090 1.43329 1.09182 1.34193 0.85425 0.79080 0.77972 0.78145 1.18979 1.21019 1.18955 0.87032 0.88798 0.85768 0.92057 0.91226 0.86199 0.86746 0.73228 0.79736 0.80724 0.82583 0.91853 0.91827 0.97980 0.97963 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.79 14.32 67.78 0.97 -1.82 16 2 C -0.16 -2.44 9.52 25.65 0.24 -2.19 16 3 C -0.07 -1.43 4.95 29.85 0.15 -1.28 16 4 C -0.13 -2.36 5.68 29.85 0.17 -2.19 16 5 C 0.50 14.05 7.79 87.66 0.68 14.73 16 6 O -0.52 -18.41 14.24 -3.02 -0.04 -18.45 16 7 N -0.65 -19.28 5.39 -308.03 -1.66 -20.94 16 8 C 0.31 10.32 7.45 132.98 0.99 11.31 16 9 N -0.47 -15.77 7.88 -192.58 -1.52 -17.29 16 10 C 0.07 1.83 11.17 84.64 0.95 2.78 16 11 C -0.15 -3.21 10.10 22.36 0.23 -2.99 16 12 C -0.15 -4.08 9.14 22.53 0.21 -3.87 16 13 C 0.04 1.33 6.72 22.70 0.15 1.49 16 14 O -0.33 -12.16 9.39 -93.25 -0.88 -13.03 16 15 C 0.08 3.26 4.70 71.98 0.34 3.59 16 16 C 0.03 1.53 5.34 29.85 0.16 1.69 16 17 C -0.55 -29.03 9.11 25.60 0.23 -28.80 16 18 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 19 C 0.00 0.25 5.46 84.65 0.46 0.71 16 20 N -0.93 -54.11 13.29 21.45 0.28 -53.83 16 21 Si 0.97 41.77 29.54 68.60 2.03 43.79 16 22 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 25 H 0.11 1.27 8.06 -2.91 -0.02 1.25 16 26 H 0.09 1.38 7.84 -2.91 -0.02 1.36 16 27 H 0.12 1.54 8.06 -2.91 -0.02 1.51 16 28 H 0.06 1.32 7.75 -2.39 -0.02 1.30 16 29 H 0.07 1.47 8.10 -2.39 -0.02 1.45 16 30 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.43 11.26 8.04 -92.71 -0.75 10.52 16 33 H 0.19 3.42 8.06 -2.91 -0.02 3.39 16 34 H 0.18 2.40 8.06 -2.91 -0.02 2.37 16 35 H 0.16 3.82 6.44 -2.91 -0.02 3.81 16 36 H 0.06 2.31 7.70 -2.39 -0.02 2.29 16 37 H 0.06 2.31 7.70 -2.39 -0.02 2.30 16 38 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 39 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 40 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -70.37 346.90 4.44 -65.93 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.29 Total: 20.64 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 5.93 Total: -6.83 kcal Atomic # 7 Polarization: -89.16 SS G_CDS: -2.89 Total: -92.06 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.92 Total: -31.48 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Total: -70.37 4.44 -65.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171057304.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.561 kcal (2) G-P(sol) polarization free energy of solvation -70.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds