Wall clock time and date at job start Tue Mar 31 2020 06:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.50701 * 119.99772 * 2 1 4 4 C 1.33019 * 119.99847 * 179.97438 * 2 1 3 5 5 C 1.47054 * 120.00382 * 0.02562 * 4 2 1 6 6 O 1.21619 * 119.99940 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99965 * 179.97438 * 5 4 2 8 8 C 1.39467 * 119.99710 * 179.97438 * 7 5 4 9 9 N 1.32295 * 119.73168 * 0.26601 * 8 7 5 10 10 C 1.31958 * 121.68732 * 180.31032 * 9 8 7 11 11 C 1.38091 * 120.95705 * 359.70617 * 10 9 8 12 12 C 1.38784 * 119.35873 * 359.97438 * 11 10 9 13 13 C 1.38787 * 118.45039 * 359.97438 * 12 11 10 14 14 O 1.35973 * 120.50046 * 179.97438 * 13 12 11 15 15 C 1.42906 * 116.99587 * 0.02562 * 14 13 12 16 16 C 1.53006 * 109.46748 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46866 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99962 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00270 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99834 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00496 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47574 * 89.99780 * 21 19 17 23 23 H 1.48500 * 109.47346 * 209.99892 * 21 19 17 24 24 H 1.48499 * 109.47067 * 329.99541 * 21 19 17 25 25 H 1.09007 * 109.46565 * 240.00335 * 1 2 3 26 26 H 1.09000 * 109.46847 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47088 * 120.00610 * 1 2 3 28 28 H 1.09008 * 109.46920 * 270.00158 * 3 2 1 29 29 H 1.09006 * 109.47306 * 29.99495 * 3 2 1 30 30 H 1.09000 * 109.47497 * 150.00004 * 3 2 1 31 31 H 1.08000 * 119.99545 * 179.97438 * 4 2 1 32 32 H 0.96999 * 119.99953 * 359.97438 * 7 5 4 33 33 H 1.07999 * 119.52366 * 179.72578 * 10 9 8 34 34 H 1.07997 * 120.31769 * 179.97438 * 11 10 9 35 35 H 1.08002 * 120.77497 * 180.02562 * 12 11 10 36 36 H 1.09000 * 109.47490 * 59.99648 * 15 14 13 37 37 H 1.09001 * 109.47232 * 299.99002 * 15 14 13 38 38 H 1.08993 * 109.46955 * 299.99993 * 16 15 14 39 39 H 1.09000 * 109.47050 * 59.99822 * 16 15 14 40 40 H 0.96992 * 120.00032 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1721 -1.1520 0.0005 5 6 1.4369 -2.4255 0.0005 6 8 0.2207 -2.4256 0.0005 7 7 2.1109 -3.5927 0.0005 8 6 1.4135 -4.8006 0.0011 9 7 0.0906 -4.7944 -0.0038 10 6 -0.6078 -5.9139 0.0026 11 6 0.0209 -7.1434 0.0086 12 6 1.4077 -7.1984 0.0073 13 6 2.1167 -6.0054 -0.0005 14 8 3.4765 -6.0107 -0.0016 15 6 4.1202 -7.2865 0.0052 16 6 5.6378 -7.0919 0.0023 17 6 6.3167 -8.4373 0.0100 18 1 5.7249 -9.3408 0.0168 19 6 7.6933 -8.5150 0.0095 20 7 8.4139 -7.4148 0.0018 21 14 8.5348 -10.1826 0.0184 22 1 8.7568 -10.6326 -1.3793 23 1 9.8408 -10.0744 0.7169 24 1 7.6758 -11.1667 0.7247 25 1 -0.3633 -0.5138 0.8901 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8899 28 1 2.4422 1.6198 -1.0277 29 1 1.6714 2.0648 0.5138 30 1 3.2130 1.1749 0.5138 31 1 3.2521 -1.1519 0.0001 32 1 3.0809 -3.5927 0.0001 33 1 -1.6868 -5.8681 0.0029 34 1 -0.5609 -8.0532 0.0142 35 1 1.9231 -8.1475 0.0115 36 1 3.8244 -7.8475 -0.8813 37 1 3.8260 -7.8372 0.8986 38 1 5.9318 -6.5414 -0.8913 39 1 5.9339 -6.5308 0.8886 40 1 9.3823 -7.4694 0.0010 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171059887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:25 Heat of formation + Delta-G solvation = -22.749725 kcal Electronic energy + Delta-G solvation = -22110.492404 eV Core-core repulsion = 18698.235509 eV Total energy + Delta-G solvation = -3412.256895 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.83645 -39.36190 -37.77030 -35.79731 -34.54352 -33.46647 -31.62741 -30.65778 -29.37104 -28.02503 -27.67437 -25.40468 -23.75623 -22.81550 -21.39767 -20.53877 -19.10360 -17.94613 -17.26144 -17.12478 -16.14847 -15.77107 -15.75417 -15.03066 -14.91951 -14.59789 -14.22877 -14.14922 -14.00336 -13.88290 -13.28872 -12.87669 -12.53925 -12.45444 -12.40270 -12.01622 -11.90709 -11.86524 -11.69969 -11.05863 -10.98978 -10.67696 -10.62823 -10.03773 -10.00386 -9.75360 -9.40072 -9.30111 -9.12206 -8.91602 -8.51931 -7.60028 -6.17687 -4.22608 1.06478 1.47882 1.53761 3.02762 3.22737 3.28892 3.31163 3.32463 3.55614 4.08083 4.34079 4.42670 4.67545 4.75774 4.97836 5.02005 5.15763 5.19173 5.25115 5.27923 5.34962 5.49200 5.54464 5.62986 5.77213 5.87309 5.91184 5.98375 6.08714 6.21674 6.35083 6.39241 6.42565 6.55669 6.69791 7.36223 7.37219 7.53391 7.65661 7.86786 8.13801 8.15323 8.43787 8.82624 9.42303 10.93770 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016663 B = 0.003376 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.989575 B = 8292.130123 C = 9941.052691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.034 4.034 3 C -0.127 4.127 4 C -0.233 4.233 5 C 0.535 3.465 6 O -0.484 6.484 7 N -0.649 5.649 8 C 0.331 3.669 9 N -0.444 5.444 10 C 0.074 3.926 11 C -0.162 4.162 12 C -0.148 4.148 13 C 0.065 3.935 14 O -0.316 6.316 15 C 0.066 3.934 16 C 0.027 3.973 17 C -0.528 4.528 18 H 0.058 0.942 19 C 0.061 3.939 20 N -0.889 5.889 21 Si 0.899 3.101 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 H 0.083 0.917 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.129 0.871 32 H 0.424 0.576 33 H 0.156 0.844 34 H 0.133 0.867 35 H 0.144 0.856 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.358 10.907 -0.017 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.035 4.035 3 C -0.183 4.183 4 C -0.254 4.254 5 C 0.325 3.675 6 O -0.357 6.357 7 N -0.296 5.296 8 C 0.098 3.902 9 N -0.159 5.159 10 C -0.082 4.082 11 C -0.183 4.183 12 C -0.175 4.175 13 C 0.014 3.986 14 O -0.228 6.228 15 C -0.008 4.008 16 C -0.011 4.011 17 C -0.566 4.566 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.527 5.527 21 Si 0.726 3.274 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.197 1.197 25 H 0.102 0.898 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.147 0.853 32 H 0.262 0.738 33 H 0.173 0.827 34 H 0.151 0.849 35 H 0.162 0.838 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.293 12.014 -0.019 19.448 hybrid contribution 1.620 -2.133 -0.009 2.678 sum -13.673 9.882 -0.028 16.870 Atomic orbital electron populations 1.21069 0.90763 1.00998 1.04501 1.22566 0.96922 0.94392 0.89667 1.21022 1.00167 0.94179 1.02941 1.22355 1.00359 0.91544 1.11191 1.18705 0.87760 0.83774 0.77247 1.90852 1.12930 1.86767 1.45122 1.43392 1.10963 1.03211 1.72057 1.17826 0.88221 0.83670 1.00506 1.67649 1.03901 1.30758 1.13613 1.22408 0.99890 0.86824 0.99101 1.21878 0.94241 0.99453 1.02771 1.21599 0.94912 0.97672 1.03298 1.19615 0.85178 0.93113 1.00707 1.86101 1.13646 1.35483 1.87606 1.23390 0.96596 0.80991 0.99805 1.19125 0.84833 0.98211 0.98886 1.20949 0.91503 0.91708 1.52475 0.92347 1.24981 0.97392 0.96933 0.94804 1.69965 1.06022 1.27151 1.49544 0.86482 0.78954 0.83665 0.78265 1.20462 1.21012 1.19750 0.89804 0.93040 0.89860 0.90286 0.91004 0.90966 0.85309 0.73831 0.82702 0.84867 0.83799 0.92973 0.92964 0.95350 0.95345 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 8.33 36.01 0.30 -0.94 16 2 C -0.03 -0.34 6.12 -101.16 -0.62 -0.96 16 3 C -0.13 -0.88 9.98 36.01 0.36 -0.52 16 4 C -0.23 -2.68 9.63 -37.82 -0.36 -3.05 16 5 C 0.54 8.02 7.70 -12.69 -0.10 7.92 16 6 O -0.48 -8.34 11.32 5.26 0.06 -8.28 16 7 N -0.65 -10.00 5.38 -12.38 -0.07 -10.06 16 8 C 0.33 5.66 7.44 -154.52 -1.15 4.51 16 9 N -0.44 -7.57 7.87 -12.24 -0.10 -7.67 16 10 C 0.07 1.03 11.17 -17.55 -0.20 0.84 16 11 C -0.16 -2.07 10.10 -39.43 -0.40 -2.47 16 12 C -0.15 -2.21 9.14 -39.18 -0.36 -2.57 16 13 C 0.07 1.12 6.72 -38.91 -0.26 0.86 16 14 O -0.32 -5.94 9.38 -19.66 -0.18 -6.13 16 15 C 0.07 1.32 4.70 37.16 0.17 1.50 16 16 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 17 C -0.53 -14.18 9.11 -34.44 -0.31 -14.49 16 18 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -25.62 13.29 55.43 0.74 -24.89 16 21 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H 0.08 1.02 7.22 -51.93 -0.37 0.65 16 26 H 0.05 0.42 7.94 -51.93 -0.41 0.01 16 27 H 0.08 1.01 7.22 -51.93 -0.37 0.64 16 28 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 29 H 0.07 0.42 8.05 -51.93 -0.42 0.00 16 30 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 32 H 0.42 5.88 8.03 -40.82 -0.33 5.55 16 33 H 0.16 1.68 8.06 -52.49 -0.42 1.25 16 34 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 35 H 0.14 1.99 6.44 -52.49 -0.34 1.65 16 36 H 0.05 0.99 7.70 -51.93 -0.40 0.59 16 37 H 0.05 0.99 7.70 -51.93 -0.40 0.59 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 342.04 15.07 5.15 5.15 Total: -1.00 -31.86 342.04 -8.13 -39.99 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.54 Total: 3.45 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -3.17 Total: -7.28 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 0.57 Total: -42.62 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.12 Total: -14.41 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.86 -8.13 -39.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171059887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.243 kcal (2) G-P(sol) polarization free energy of solvation -31.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds