Wall clock time and date at job start Tue Mar 31 2020 06:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.50701 * 119.99772 * 2 1 4 4 C 1.33019 * 119.99847 * 179.97438 * 2 1 3 5 5 C 1.47054 * 120.00382 * 0.02562 * 4 2 1 6 6 O 1.21619 * 119.99940 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99965 * 179.97438 * 5 4 2 8 8 C 1.39467 * 119.99710 * 179.97438 * 7 5 4 9 9 N 1.32295 * 119.73168 * 0.26601 * 8 7 5 10 10 C 1.31958 * 121.68732 * 180.31032 * 9 8 7 11 11 C 1.38091 * 120.95705 * 359.70617 * 10 9 8 12 12 C 1.38784 * 119.35873 * 359.97438 * 11 10 9 13 13 C 1.38787 * 118.45039 * 359.97438 * 12 11 10 14 14 O 1.35973 * 120.50046 * 179.97438 * 13 12 11 15 15 C 1.42906 * 116.99587 * 0.02562 * 14 13 12 16 16 C 1.53006 * 109.46748 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46866 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99962 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00270 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99834 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00496 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47574 * 89.99780 * 21 19 17 23 23 H 1.48500 * 109.47346 * 209.99892 * 21 19 17 24 24 H 1.48499 * 109.47067 * 329.99541 * 21 19 17 25 25 H 1.09007 * 109.46565 * 240.00335 * 1 2 3 26 26 H 1.09000 * 109.46847 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47088 * 120.00610 * 1 2 3 28 28 H 1.09008 * 109.46920 * 270.00158 * 3 2 1 29 29 H 1.09006 * 109.47306 * 29.99495 * 3 2 1 30 30 H 1.09000 * 109.47497 * 150.00004 * 3 2 1 31 31 H 1.08000 * 119.99545 * 179.97438 * 4 2 1 32 32 H 0.96999 * 119.99953 * 359.97438 * 7 5 4 33 33 H 1.07999 * 119.52366 * 179.72578 * 10 9 8 34 34 H 1.07997 * 120.31769 * 179.97438 * 11 10 9 35 35 H 1.08002 * 120.77497 * 180.02562 * 12 11 10 36 36 H 1.09000 * 109.47490 * 59.99648 * 15 14 13 37 37 H 1.09001 * 109.47232 * 299.99002 * 15 14 13 38 38 H 1.08993 * 109.46955 * 299.99993 * 16 15 14 39 39 H 1.09000 * 109.47050 * 59.99822 * 16 15 14 40 40 H 0.96992 * 120.00032 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1721 -1.1520 0.0005 5 6 1.4369 -2.4255 0.0005 6 8 0.2207 -2.4256 0.0005 7 7 2.1109 -3.5927 0.0005 8 6 1.4135 -4.8006 0.0011 9 7 0.0906 -4.7944 -0.0038 10 6 -0.6078 -5.9139 0.0026 11 6 0.0209 -7.1434 0.0086 12 6 1.4077 -7.1984 0.0073 13 6 2.1167 -6.0054 -0.0005 14 8 3.4765 -6.0107 -0.0016 15 6 4.1202 -7.2865 0.0052 16 6 5.6378 -7.0919 0.0023 17 6 6.3167 -8.4373 0.0100 18 1 5.7249 -9.3408 0.0168 19 6 7.6933 -8.5150 0.0095 20 7 8.4139 -7.4148 0.0018 21 14 8.5348 -10.1826 0.0184 22 1 8.7568 -10.6326 -1.3793 23 1 9.8408 -10.0744 0.7169 24 1 7.6758 -11.1667 0.7247 25 1 -0.3633 -0.5138 0.8901 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8899 28 1 2.4422 1.6198 -1.0277 29 1 1.6714 2.0648 0.5138 30 1 3.2130 1.1749 0.5138 31 1 3.2521 -1.1519 0.0001 32 1 3.0809 -3.5927 0.0001 33 1 -1.6868 -5.8681 0.0029 34 1 -0.5609 -8.0532 0.0142 35 1 1.9231 -8.1475 0.0115 36 1 3.8244 -7.8475 -0.8813 37 1 3.8260 -7.8372 0.8986 38 1 5.9318 -6.5414 -0.8913 39 1 5.9339 -6.5308 0.8886 40 1 9.3823 -7.4694 0.0010 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171059887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:25 Heat of formation + Delta-G solvation = -41.634892 kcal Electronic energy + Delta-G solvation = -22111.311326 eV Core-core repulsion = 18698.235509 eV Total energy + Delta-G solvation = -3413.075817 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.03416 -40.53533 -39.11866 -36.71087 -35.70496 -35.42279 -32.91019 -32.31258 -30.68387 -28.78161 -28.57918 -27.17025 -25.09179 -24.06280 -22.91709 -21.84712 -20.19187 -19.29961 -18.50174 -18.25125 -17.96131 -17.17435 -16.98657 -16.46456 -16.25925 -15.95075 -15.30242 -15.12645 -15.04278 -14.99286 -14.35448 -14.33880 -14.16401 -13.62546 -13.34767 -13.28853 -13.23222 -12.80552 -12.74742 -12.66916 -12.44912 -12.42345 -11.82894 -11.69868 -11.63207 -11.43048 -11.08140 -10.61102 -10.42303 -10.09803 -10.07546 -8.82379 -8.25882 -6.38615 -0.01518 0.28788 0.55444 1.42393 1.43511 1.54435 1.93140 2.11447 2.24947 2.44301 2.91093 3.09307 3.42209 3.71247 3.85534 3.91839 4.01866 4.12865 4.28416 4.30444 4.33216 4.46977 4.55585 4.70618 4.73838 4.80933 4.91403 4.95954 5.02713 5.14072 5.18122 5.30501 5.32706 5.49665 5.50484 5.54535 5.61275 5.74117 6.07553 6.26673 6.34283 6.76172 6.98045 7.30199 7.31467 8.86829 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016663 B = 0.003376 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.989575 B = 8292.130123 C = 9941.052691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.019 4.019 3 C -0.124 4.124 4 C -0.255 4.255 5 C 0.528 3.472 6 O -0.514 6.514 7 N -0.652 5.652 8 C 0.312 3.688 9 N -0.473 5.473 10 C 0.073 3.927 11 C -0.147 4.147 12 C -0.149 4.149 13 C 0.038 3.962 14 O -0.330 6.330 15 C 0.084 3.916 16 C 0.030 3.970 17 C -0.545 4.545 18 H 0.071 0.929 19 C 0.004 3.996 20 N -0.929 5.929 21 Si 0.971 3.029 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.260 1.260 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.147 0.853 32 H 0.426 0.574 33 H 0.187 0.813 34 H 0.176 0.824 35 H 0.157 0.843 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.001 0.999 39 H 0.001 0.999 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.393 10.084 -0.013 18.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.020 4.020 3 C -0.181 4.181 4 C -0.276 4.276 5 C 0.320 3.680 6 O -0.390 6.390 7 N -0.299 5.299 8 C 0.079 3.921 9 N -0.188 5.188 10 C -0.084 4.084 11 C -0.168 4.168 12 C -0.175 4.175 13 C -0.013 4.013 14 O -0.243 6.243 15 C 0.009 3.991 16 C -0.007 4.007 17 C -0.583 4.583 18 H 0.089 0.911 19 C -0.195 4.195 20 N -0.568 5.568 21 Si 0.795 3.205 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.184 1.184 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.082 0.918 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.165 0.835 32 H 0.264 0.736 33 H 0.204 0.796 34 H 0.193 0.807 35 H 0.174 0.826 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.335 11.198 -0.016 19.805 hybrid contribution 1.777 -1.808 -0.012 2.535 sum -14.557 9.391 -0.028 17.323 Atomic orbital electron populations 1.21017 0.91354 1.02171 1.02650 1.22935 0.96780 0.95452 0.86865 1.21106 1.00330 0.92460 1.04158 1.22410 1.01168 0.90372 1.13626 1.19324 0.87730 0.84566 0.76403 1.90820 1.14136 1.87217 1.46803 1.43520 1.11125 1.03283 1.72017 1.18055 0.88586 0.84209 1.01203 1.67707 1.03960 1.32530 1.14639 1.23077 1.01338 0.86578 0.97360 1.22274 0.93461 1.00647 1.00390 1.21901 0.96032 0.97237 1.02346 1.19776 0.84218 0.94224 1.03060 1.86028 1.15132 1.34595 1.88565 1.22957 0.93545 0.81723 1.00845 1.18944 0.88506 0.97020 0.96252 1.21399 0.92158 0.92752 1.51971 0.91103 1.25970 0.98303 1.00943 0.94287 1.70102 1.06382 1.29674 1.50672 0.85350 0.77706 0.78849 0.78571 1.19705 1.20864 1.18367 0.91703 0.90214 0.91759 0.88839 0.89329 0.90106 0.83501 0.73556 0.79638 0.80684 0.82586 0.91820 0.91828 0.98045 0.98035 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.33 71.24 0.59 -1.83 16 2 C -0.02 -0.36 6.12 -17.61 -0.11 -0.47 16 3 C -0.12 -1.44 9.98 71.24 0.71 -0.73 16 4 C -0.25 -5.92 9.63 23.42 0.23 -5.70 16 5 C 0.53 16.49 7.70 86.56 0.67 17.16 16 6 O -0.51 -18.47 11.32 -4.09 -0.05 -18.51 16 7 N -0.65 -21.08 5.38 -311.34 -1.68 -22.76 16 8 C 0.31 10.91 7.44 133.02 0.99 11.90 16 9 N -0.47 -16.12 7.87 -192.63 -1.52 -17.63 16 10 C 0.07 1.90 11.17 84.64 0.95 2.84 16 11 C -0.15 -3.34 10.10 22.37 0.23 -3.11 16 12 C -0.15 -4.19 9.14 22.53 0.21 -3.99 16 13 C 0.04 1.30 6.72 22.71 0.15 1.46 16 14 O -0.33 -12.74 9.38 -93.25 -0.88 -13.61 16 15 C 0.08 3.35 4.70 71.98 0.34 3.69 16 16 C 0.03 1.54 5.34 29.85 0.16 1.70 16 17 C -0.55 -29.38 9.11 25.60 0.23 -29.14 16 18 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 19 C 0.00 0.21 5.46 84.65 0.46 0.67 16 20 N -0.93 -54.68 13.29 21.45 0.28 -54.40 16 21 Si 0.97 42.20 29.54 68.60 2.03 44.22 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 24 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 25 H 0.06 1.63 7.22 -2.38 -0.02 1.61 16 26 H 0.08 1.18 7.94 -2.39 -0.02 1.16 16 27 H 0.06 1.61 7.22 -2.39 -0.02 1.60 16 28 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.09 0.77 8.05 -2.38 -0.02 0.75 16 30 H 0.08 0.84 8.07 -2.39 -0.02 0.82 16 31 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 32 H 0.43 12.66 8.03 -92.71 -0.74 11.92 16 33 H 0.19 3.49 8.06 -2.91 -0.02 3.47 16 34 H 0.18 2.49 8.06 -2.91 -0.02 2.46 16 35 H 0.16 3.96 6.44 -2.91 -0.02 3.94 16 36 H 0.06 2.38 7.70 -2.39 -0.02 2.36 16 37 H 0.06 2.38 7.70 -2.39 -0.02 2.36 16 38 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 39 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -71.05 342.04 4.31 -66.74 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.31 Total: 21.51 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: 5.80 Total: -5.55 kcal Atomic # 7 Polarization: -91.89 SS G_CDS: -2.91 Total: -94.79 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.92 Total: -32.12 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -71.05 4.31 -66.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171059887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.108 kcal (2) G-P(sol) polarization free energy of solvation -71.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds