Wall clock time and date at job start Tue Mar 31 2020 06:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33023 * 120.00474 * 2 1 4 4 C 1.50697 * 119.99614 * 359.97438 * 3 2 1 5 5 C 1.47045 * 120.00249 * 180.02562 * 3 2 1 6 6 O 1.21628 * 120.00497 * 359.97438 * 5 3 2 7 7 N 1.34779 * 120.00218 * 180.02562 * 5 3 2 8 8 C 1.39475 * 120.00453 * 179.97438 * 7 5 3 9 9 N 1.32291 * 119.72372 * 359.97438 * 8 7 5 10 10 C 1.31966 * 121.68220 * 180.02562 * 9 8 7 11 11 C 1.38081 * 120.95829 * 0.02562 * 10 9 8 12 12 C 1.38782 * 119.35847 * 359.70153 * 11 10 9 13 13 C 1.38787 * 118.45207 * 0.56050 * 12 11 10 14 14 O 1.35973 * 120.50233 * 179.70991 * 13 12 11 15 15 C 1.42906 * 116.99587 * 359.73080 * 14 13 12 16 16 C 1.53006 * 109.46748 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.46866 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99962 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00270 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99834 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00496 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47574 * 89.99780 * 21 19 17 23 23 H 1.48500 * 109.47346 * 209.99892 * 21 19 17 24 24 H 1.48499 * 109.47067 * 329.99541 * 21 19 17 25 25 H 1.09004 * 109.46958 * 299.99785 * 1 2 3 26 26 H 1.09000 * 109.46930 * 59.99737 * 1 2 3 27 27 H 1.08993 * 109.47230 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99886 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.47661 * 270.00065 * 4 3 2 30 30 H 1.09004 * 109.47491 * 30.00182 * 4 3 2 31 31 H 1.09006 * 109.47088 * 150.00024 * 4 3 2 32 32 H 0.96999 * 119.99665 * 359.97438 * 7 5 3 33 33 H 1.08000 * 119.51529 * 179.97438 * 10 9 8 34 34 H 1.07998 * 120.31626 * 180.02562 * 11 10 9 35 35 H 1.08006 * 120.77228 * 180.27775 * 12 11 10 36 36 H 1.09000 * 109.47490 * 59.99648 * 15 14 13 37 37 H 1.09001 * 109.47232 * 299.99002 * 15 14 13 38 38 H 1.08993 * 109.46955 * 299.99993 * 16 15 14 39 39 H 1.09000 * 109.47050 * 59.99822 * 16 15 14 40 40 H 0.96992 * 120.00032 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1722 1.1520 0.0000 4 6 1.4187 2.4570 -0.0006 5 6 3.6427 1.1519 -0.0006 6 8 4.2508 0.0986 -0.0006 7 7 4.3166 2.3191 0.0000 8 6 5.7114 2.3191 0.0000 9 7 6.3673 1.1702 0.0000 10 6 7.6862 1.1251 0.0005 11 6 8.4366 2.2843 0.0015 12 6 7.7909 3.5127 -0.0042 13 6 6.4032 3.5304 0.0011 14 8 5.7280 4.7107 0.0017 15 6 6.5111 5.9060 0.0027 16 6 5.5839 7.1231 0.0027 17 6 6.4097 8.3837 0.0044 18 1 7.4880 8.3228 0.0058 19 6 5.7888 9.6147 0.0052 20 7 4.4756 9.6888 0.0039 21 14 6.8123 11.1772 0.0066 22 1 7.0840 11.5924 -1.3931 23 1 6.0692 12.2552 0.7072 24 1 8.0976 10.9264 0.7068 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 2.0470 -0.9353 -0.0004 29 1 1.2374 2.7715 -1.0283 30 1 0.4661 2.3269 0.5129 31 1 2.0077 3.2168 0.5133 32 1 3.8317 3.1591 0.0003 33 1 8.1858 0.1676 0.0009 34 1 9.5154 2.2353 0.0015 35 1 8.3553 4.4336 -0.0080 36 1 7.1404 5.9290 -0.8870 37 1 7.1397 5.9278 0.8930 38 1 4.9556 7.1011 -0.8877 39 1 4.9544 7.1003 0.8922 40 1 4.0388 10.5548 0.0041 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175953264.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:02 Heat of formation + Delta-G solvation = -24.035430 kcal Electronic energy + Delta-G solvation = -22251.327824 eV Core-core repulsion = 18839.015177 eV Total energy + Delta-G solvation = -3412.312648 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.88479 -39.36918 -37.78511 -35.65886 -34.82704 -33.47823 -31.65092 -30.72760 -29.74709 -28.68173 -26.32783 -25.42453 -23.94824 -22.86221 -21.61573 -20.64892 -18.95314 -18.02921 -17.46037 -16.99558 -16.19730 -15.93690 -15.79755 -15.08427 -15.04236 -14.59065 -14.52163 -13.99125 -13.91980 -13.57744 -13.30506 -12.90173 -12.74243 -12.52748 -12.41049 -12.18259 -11.99391 -11.92554 -11.45149 -11.06844 -10.99634 -10.70554 -10.68496 -10.20905 -10.05028 -9.77824 -9.41649 -9.23722 -9.14643 -9.01715 -8.52632 -7.63824 -6.18423 -4.23319 1.03277 1.46104 1.52246 2.95963 3.22270 3.27738 3.28455 3.30663 3.53572 4.05635 4.33403 4.38746 4.75271 4.76108 4.96208 4.98271 5.09633 5.11474 5.18491 5.26920 5.31130 5.47743 5.51661 5.55847 5.64945 5.83926 5.86348 5.90004 6.07011 6.18844 6.26746 6.36432 6.39842 6.54145 6.66775 7.31796 7.34695 7.52260 7.64147 7.85315 8.09887 8.14056 8.38821 8.81817 9.41629 10.92998 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014917 B = 0.003698 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.569378 B = 7569.628910 C = 9415.146291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.076 4.076 3 C -0.187 4.187 4 C -0.123 4.123 5 C 0.544 3.456 6 O -0.486 6.486 7 N -0.647 5.647 8 C 0.329 3.671 9 N -0.444 5.444 10 C 0.075 3.925 11 C -0.161 4.161 12 C -0.148 4.148 13 C 0.067 3.933 14 O -0.316 6.316 15 C 0.066 3.934 16 C 0.027 3.973 17 C -0.528 4.528 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.889 5.889 21 Si 0.899 3.101 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.126 0.874 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.424 0.576 33 H 0.156 0.844 34 H 0.134 0.866 35 H 0.145 0.855 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.744 -16.086 -0.031 16.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.096 4.096 3 C -0.190 4.190 4 C -0.180 4.180 5 C 0.332 3.668 6 O -0.359 6.359 7 N -0.296 5.296 8 C 0.096 3.904 9 N -0.159 5.159 10 C -0.082 4.082 11 C -0.182 4.182 12 C -0.174 4.174 13 C 0.015 3.985 14 O -0.229 6.229 15 C -0.008 4.008 16 C -0.010 4.010 17 C -0.566 4.566 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.527 5.527 21 Si 0.726 3.274 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.197 1.197 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.144 0.856 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.263 0.737 33 H 0.174 0.826 34 H 0.152 0.848 35 H 0.163 0.837 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.232 -17.440 -0.026 17.737 hybrid contribution 1.130 2.295 -0.006 2.558 sum -2.102 -15.145 -0.033 15.290 Atomic orbital electron populations 1.20985 0.92025 1.02946 1.02724 1.23548 0.96269 0.97769 0.92004 1.21414 0.92146 0.97151 1.08250 1.20893 1.00284 0.93859 1.02976 1.18553 0.87792 0.83463 0.76943 1.90863 1.69381 1.30296 1.45324 1.43418 1.03424 1.10875 1.71848 1.17819 0.84670 0.87197 1.00747 1.67650 1.10030 1.24735 1.13500 1.22420 0.88270 0.98446 0.99069 1.21887 1.01258 0.92448 1.02581 1.21605 0.92611 0.99967 1.03263 1.19600 0.91534 0.86721 1.00631 1.86098 1.36961 1.12213 1.87602 1.23401 0.95834 0.81734 0.99845 1.19126 0.94808 0.88224 0.98887 1.20946 0.92995 0.90203 1.52498 0.92348 1.24978 0.95015 0.99306 0.94794 1.69963 1.07969 1.25196 1.49530 0.86483 0.80127 0.82499 0.78265 1.20463 1.21012 1.19750 0.90571 0.90661 0.91478 0.85596 0.90543 0.90678 0.91324 0.73664 0.82629 0.84785 0.83724 0.92938 0.92930 0.95341 0.95341 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.89 8.91 36.01 0.32 -0.57 16 2 C -0.08 -0.77 9.84 -36.12 -0.36 -1.13 16 3 C -0.19 -2.20 6.00 -102.86 -0.62 -2.81 16 4 C -0.12 -1.17 9.14 36.00 0.33 -0.84 16 5 C 0.54 8.48 7.71 -12.69 -0.10 8.38 16 6 O -0.49 -9.03 14.47 5.25 0.08 -8.95 16 7 N -0.65 -10.17 5.33 -12.38 -0.07 -10.24 16 8 C 0.33 5.70 7.44 -154.51 -1.15 4.55 16 9 N -0.44 -7.73 7.87 -12.24 -0.10 -7.83 16 10 C 0.07 1.05 11.17 -17.55 -0.20 0.85 16 11 C -0.16 -2.05 10.10 -39.44 -0.40 -2.45 16 12 C -0.15 -2.20 9.14 -39.18 -0.36 -2.56 16 13 C 0.07 1.14 6.72 -38.91 -0.26 0.88 16 14 O -0.32 -5.92 9.38 -19.66 -0.18 -6.10 16 15 C 0.07 1.30 4.70 37.16 0.17 1.48 16 16 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 17 C -0.53 -14.09 9.11 -34.44 -0.31 -14.41 16 18 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -25.45 13.29 55.43 0.74 -24.71 16 21 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 25 H 0.08 0.47 7.40 -51.93 -0.38 0.09 16 26 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.13 1.38 7.49 -52.49 -0.39 0.99 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.58 6.49 -51.93 -0.34 0.24 16 31 H 0.07 0.68 6.70 -51.93 -0.35 0.33 16 32 H 0.42 6.02 6.14 -40.82 -0.25 5.77 16 33 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 35 H 0.15 1.98 6.44 -52.48 -0.34 1.64 16 36 H 0.05 0.99 7.69 -51.93 -0.40 0.59 16 37 H 0.05 0.99 7.71 -51.93 -0.40 0.59 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 LS Contribution 340.88 15.07 5.14 5.14 Total: -1.00 -32.29 340.88 -7.94 -40.22 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.35 Total: 3.40 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -3.17 Total: -6.54 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.57 Total: -42.78 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.11 Total: -15.06 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.29 -7.94 -40.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175953264.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.189 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds