Wall clock time and date at job start Tue Mar 31 2020 06:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47087 * 2 1 4 4 H 1.09002 * 109.43549 * 55.09006 * 3 2 1 5 5 O 1.42923 * 109.39983 * 295.19778 * 3 2 1 6 6 C 1.36020 * 116.96701 * 285.36915 * 5 3 2 7 7 C 1.38445 * 120.45119 * 148.34266 * 6 5 3 8 8 C 1.38299 * 119.89413 * 178.49566 * 7 6 5 9 9 C 1.50696 * 119.88040 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.47381 * 339.99981 * 9 8 7 11 11 C 1.53000 * 109.47386 * 99.99837 * 9 8 7 12 12 N 1.46504 * 109.47179 * 219.99828 * 9 8 7 13 13 C 1.36934 * 119.99925 * 155.00027 * 12 9 8 14 14 H 1.07994 * 120.00251 * 0.02562 * 13 12 9 15 15 C 1.38816 * 119.99507 * 179.97438 * 13 12 9 16 16 N 1.31611 * 120.00100 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99607 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47177 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46575 * 120.00377 * 17 15 13 20 20 H 1.48503 * 109.47120 * 240.00011 * 17 15 13 21 21 C 1.38279 * 120.23645 * 359.97438 * 8 7 6 22 22 C 1.38261 * 120.19454 * 0.31788 * 21 8 7 23 23 C 1.38573 * 119.84452 * 359.97438 * 22 21 8 24 24 N 1.40157 * 120.54968 * 178.57406 * 23 22 21 25 25 C 1.34942 * 119.23469 * 191.24984 * 24 23 22 26 26 O 1.21294 * 120.11187 * 186.02567 * 25 24 23 27 27 H 1.08999 * 109.46714 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46924 * 300.00060 * 1 2 3 29 29 H 1.08994 * 109.46794 * 60.00405 * 1 2 3 30 30 H 1.08999 * 109.47288 * 239.99692 * 2 1 3 31 31 H 1.09008 * 109.47119 * 120.00037 * 2 1 3 32 32 H 1.08000 * 120.05318 * 358.51330 * 7 6 5 33 33 H 1.09006 * 109.47200 * 59.99553 * 11 9 8 34 34 H 1.08991 * 109.47484 * 180.02562 * 11 9 8 35 35 H 1.09006 * 109.46994 * 300.00488 * 11 9 8 36 36 H 0.97001 * 119.99664 * 334.99614 * 12 9 8 37 37 H 0.97010 * 120.00021 * 179.97438 * 16 15 13 38 38 H 1.08005 * 119.90137 * 180.29334 * 21 8 7 39 39 H 1.08006 * 120.08010 * 180.02562 * 22 21 8 40 40 H 0.97001 * 120.37793 * 11.27793 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6063 1.9805 0.8429 5 8 1.6572 2.0814 -1.2198 6 6 2.3453 1.7340 -2.3405 7 6 1.7214 1.7377 -3.5764 8 6 2.4401 1.4126 -4.7123 9 6 1.7608 1.4174 -6.0575 10 1 0.6820 1.3440 -5.9200 11 6 2.0939 2.7173 -6.7925 12 7 2.2314 0.2760 -6.8463 13 6 1.4448 -0.2392 -7.8417 14 1 0.4777 0.1961 -8.0457 15 6 1.8910 -1.3203 -8.5894 16 7 3.0697 -1.8504 -8.3412 17 14 0.8176 -2.0236 -9.9470 18 1 -0.4505 -1.2548 -10.0237 19 1 1.5338 -1.9270 -11.2442 20 1 0.5167 -3.4476 -9.6525 21 6 3.7800 1.0842 -4.6183 22 6 4.4084 1.0725 -3.3868 23 6 3.6922 1.3914 -2.2442 24 7 4.3067 1.3553 -0.9850 25 6 3.5428 1.4443 0.1239 26 8 4.0634 1.5247 1.2165 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 0.6751 1.9944 -3.6533 33 1 3.1727 2.7908 -6.9300 34 1 1.6022 2.7209 -7.7652 35 1 1.7438 3.5665 -6.2056 36 1 3.1002 -0.1147 -6.6634 37 1 3.3814 -2.6062 -8.8635 38 1 4.3373 0.8358 -5.5095 39 1 5.4551 0.8161 -3.3156 40 1 5.2699 1.2678 -0.9116 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180004061.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:28 Heat of formation + Delta-G solvation = -40.263707 kcal Electronic energy + Delta-G solvation = -23089.979591 eV Core-core repulsion = 19676.963232 eV Total energy + Delta-G solvation = -3413.016358 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.63849 -39.06404 -37.96865 -36.05438 -34.42599 -33.70485 -32.02064 -30.37936 -29.12713 -28.03582 -27.34525 -24.21863 -23.74809 -22.76543 -22.46578 -20.91006 -19.07865 -18.55198 -17.97193 -17.32103 -16.41422 -15.95680 -15.72333 -15.31374 -14.90439 -14.50546 -14.41165 -13.83533 -13.75680 -13.47665 -13.19234 -13.03842 -12.73153 -12.50850 -12.43838 -12.13274 -11.96670 -11.46525 -11.40136 -11.24014 -11.06245 -10.89925 -10.76140 -10.49251 -10.35911 -10.10606 -9.98616 -9.72446 -9.00520 -8.52296 -7.76213 -7.03949 -5.82501 -3.11254 1.15138 1.41685 2.20705 2.65666 3.20913 3.40437 3.46541 3.48419 3.81383 3.87509 4.45662 4.55307 4.62111 4.65392 4.99274 5.10186 5.19147 5.29596 5.38411 5.44015 5.51899 5.58643 5.69055 5.71850 5.81848 5.89244 6.03780 6.08637 6.10396 6.24314 6.30112 6.44582 6.52861 6.60469 6.72872 6.81808 6.90211 7.08454 7.33681 7.63654 7.66438 8.35705 9.47578 10.02221 10.37385 11.40186 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022573 B = 0.003824 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.147206 B = 7320.396063 C = 7599.788238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.147 4.147 3 C 0.082 3.918 4 H 0.146 0.854 5 O -0.298 6.298 6 C 0.077 3.923 7 C -0.105 4.105 8 C -0.052 4.052 9 C 0.208 3.792 10 H 0.059 0.941 11 C -0.160 4.160 12 N -0.721 5.721 13 C -0.239 4.239 14 H 0.073 0.927 15 C -0.012 4.012 16 N -0.932 5.932 17 Si 0.906 3.094 18 H -0.280 1.280 19 H -0.292 1.292 20 H -0.292 1.292 21 C -0.094 4.094 22 C -0.120 4.120 23 C 0.073 3.927 24 N -0.654 5.654 25 C 0.496 3.504 26 O -0.522 6.522 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.137 0.863 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.039 0.961 36 H 0.385 0.615 37 H 0.255 0.745 38 H 0.137 0.863 39 H 0.129 0.871 40 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.947 6.995 14.810 16.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.185 4.185 3 C 0.022 3.978 4 H 0.163 0.837 5 O -0.212 6.212 6 C 0.031 3.969 7 C -0.124 4.124 8 C -0.054 4.054 9 C 0.098 3.902 10 H 0.077 0.923 11 C -0.221 4.221 12 N -0.364 5.364 13 C -0.370 4.370 14 H 0.091 0.909 15 C -0.208 4.208 16 N -0.580 5.580 17 Si 0.737 3.263 18 H -0.205 1.205 19 H -0.219 1.219 20 H -0.219 1.219 21 C -0.113 4.113 22 C -0.140 4.140 23 C -0.022 4.022 24 N -0.300 5.300 25 C 0.283 3.717 26 O -0.397 6.397 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.155 0.845 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.220 0.780 37 H 0.065 0.935 38 H 0.155 0.845 39 H 0.147 0.853 40 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -1.142 7.130 15.346 16.960 hybrid contribution 0.540 -0.817 -0.662 1.182 sum -0.601 6.313 14.684 15.995 Atomic orbital electron populations 1.21673 0.93402 1.02438 1.02759 1.22075 0.98553 0.93927 1.03991 1.22902 0.89774 0.97034 0.88045 0.83709 1.86267 1.58573 1.62577 1.13832 1.18412 0.88197 1.02914 0.87422 1.20387 1.00422 1.02725 0.88893 1.20317 0.93725 0.95657 0.95725 1.19203 0.96330 0.89002 0.85661 0.92317 1.22432 1.01424 0.97389 1.00815 1.42525 1.21019 1.34095 1.38731 1.19288 0.99170 1.10244 1.08328 0.90923 1.24729 0.97099 0.98822 1.00115 1.69661 1.18974 1.26385 1.43009 0.86128 0.79532 0.78778 0.81813 1.20483 1.21867 1.21879 1.20933 0.94666 0.98588 0.97088 1.20605 0.99980 1.02628 0.90833 1.17926 0.92081 1.06799 0.85386 1.43623 1.10877 1.71229 1.04306 1.21430 0.90960 0.75438 0.83891 1.90778 1.74944 1.48118 1.25900 0.91945 0.92357 0.91435 0.90511 0.89932 0.84549 0.93240 0.92271 0.94169 0.77996 0.93508 0.84481 0.85264 0.74847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.81 37.16 0.36 -0.93 16 2 C -0.15 -1.50 5.45 -26.73 -0.15 -1.64 16 3 C 0.08 0.92 3.20 -27.84 -0.09 0.83 16 4 H 0.15 1.33 8.14 -51.93 -0.42 0.91 16 5 O -0.30 -3.83 9.68 -19.80 -0.19 -4.02 16 6 C 0.08 1.06 5.83 -39.11 -0.23 0.84 16 7 C -0.10 -1.52 9.61 -39.48 -0.38 -1.90 16 8 C -0.05 -0.85 4.96 -104.59 -0.52 -1.37 16 9 C 0.21 3.87 3.09 -69.08 -0.21 3.66 16 10 H 0.06 1.10 7.94 -51.93 -0.41 0.69 16 11 C -0.16 -2.72 9.47 37.16 0.35 -2.37 16 12 N -0.72 -16.98 5.07 -54.55 -0.28 -17.26 16 13 C -0.24 -6.33 9.93 -15.06 -0.15 -6.48 16 14 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 15 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 16 N -0.93 -27.13 13.06 55.49 0.72 -26.40 16 17 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 C -0.09 -1.45 9.04 -39.56 -0.36 -1.81 16 22 C -0.12 -1.59 9.94 -39.45 -0.39 -1.98 16 23 C 0.07 0.97 6.58 -83.53 -0.55 0.42 16 24 N -0.65 -7.87 5.46 -9.70 -0.05 -7.93 16 25 C 0.50 6.41 7.19 -10.87 -0.08 6.33 16 26 O -0.52 -7.94 17.95 5.55 0.10 -7.84 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.67 7.81 -51.93 -0.41 0.26 16 30 H 0.08 0.90 7.73 -51.93 -0.40 0.50 16 31 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 32 H 0.14 1.78 8.03 -52.49 -0.42 1.36 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.38 9.51 6.06 -40.82 -0.25 9.26 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.14 2.24 6.91 -52.48 -0.36 1.88 16 39 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 40 H 0.41 4.16 8.87 -40.82 -0.36 3.79 16 LS Contribution 336.20 15.07 5.07 5.07 Total: -1.00 -30.64 336.20 -7.68 -38.31 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -5.54 Total: 10.22 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -2.48 Total: -6.82 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: 0.40 Total: -51.59 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -0.09 Total: -11.86 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.64 -7.68 -38.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180004061.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.954 kcal (2) G-P(sol) polarization free energy of solvation -30.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds