Wall clock time and date at job start Tue Mar 31 2020 06:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47087 * 2 1 4 4 H 1.09002 * 109.43549 * 55.09006 * 3 2 1 5 5 O 1.42923 * 109.39983 * 295.19778 * 3 2 1 6 6 C 1.36020 * 116.96701 * 285.36915 * 5 3 2 7 7 C 1.38445 * 120.45119 * 148.34266 * 6 5 3 8 8 C 1.38299 * 119.89413 * 178.49566 * 7 6 5 9 9 C 1.50696 * 119.88040 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.47381 * 339.99981 * 9 8 7 11 11 C 1.53000 * 109.47386 * 99.99837 * 9 8 7 12 12 N 1.46504 * 109.47179 * 219.99828 * 9 8 7 13 13 C 1.36934 * 119.99925 * 155.00027 * 12 9 8 14 14 H 1.07994 * 120.00251 * 0.02562 * 13 12 9 15 15 C 1.38816 * 119.99507 * 179.97438 * 13 12 9 16 16 N 1.31611 * 120.00100 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99607 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47177 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46575 * 120.00377 * 17 15 13 20 20 H 1.48503 * 109.47120 * 240.00011 * 17 15 13 21 21 C 1.38279 * 120.23645 * 359.97438 * 8 7 6 22 22 C 1.38261 * 120.19454 * 0.31788 * 21 8 7 23 23 C 1.38573 * 119.84452 * 359.97438 * 22 21 8 24 24 N 1.40157 * 120.54968 * 178.57406 * 23 22 21 25 25 C 1.34942 * 119.23469 * 191.24984 * 24 23 22 26 26 O 1.21294 * 120.11187 * 186.02567 * 25 24 23 27 27 H 1.08999 * 109.46714 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46924 * 300.00060 * 1 2 3 29 29 H 1.08994 * 109.46794 * 60.00405 * 1 2 3 30 30 H 1.08999 * 109.47288 * 239.99692 * 2 1 3 31 31 H 1.09008 * 109.47119 * 120.00037 * 2 1 3 32 32 H 1.08000 * 120.05318 * 358.51330 * 7 6 5 33 33 H 1.09006 * 109.47200 * 59.99553 * 11 9 8 34 34 H 1.08991 * 109.47484 * 180.02562 * 11 9 8 35 35 H 1.09006 * 109.46994 * 300.00488 * 11 9 8 36 36 H 0.97001 * 119.99664 * 334.99614 * 12 9 8 37 37 H 0.97010 * 120.00021 * 179.97438 * 16 15 13 38 38 H 1.08005 * 119.90137 * 180.29334 * 21 8 7 39 39 H 1.08006 * 120.08010 * 180.02562 * 22 21 8 40 40 H 0.97001 * 120.37793 * 11.27793 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6063 1.9805 0.8429 5 8 1.6572 2.0814 -1.2198 6 6 2.3453 1.7340 -2.3405 7 6 1.7214 1.7377 -3.5764 8 6 2.4401 1.4126 -4.7123 9 6 1.7608 1.4174 -6.0575 10 1 0.6820 1.3440 -5.9200 11 6 2.0939 2.7173 -6.7925 12 7 2.2314 0.2760 -6.8463 13 6 1.4448 -0.2392 -7.8417 14 1 0.4777 0.1961 -8.0457 15 6 1.8910 -1.3203 -8.5894 16 7 3.0697 -1.8504 -8.3412 17 14 0.8176 -2.0236 -9.9470 18 1 -0.4505 -1.2548 -10.0237 19 1 1.5338 -1.9270 -11.2442 20 1 0.5167 -3.4476 -9.6525 21 6 3.7800 1.0842 -4.6183 22 6 4.4084 1.0725 -3.3868 23 6 3.6922 1.3914 -2.2442 24 7 4.3067 1.3553 -0.9850 25 6 3.5428 1.4443 0.1239 26 8 4.0634 1.5247 1.2165 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 0.6751 1.9944 -3.6533 33 1 3.1727 2.7908 -6.9300 34 1 1.6022 2.7209 -7.7652 35 1 1.7438 3.5665 -6.2056 36 1 3.1002 -0.1147 -6.6634 37 1 3.3814 -2.6062 -8.8635 38 1 4.3373 0.8358 -5.5095 39 1 5.4551 0.8161 -3.3156 40 1 5.2699 1.2678 -0.9116 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180004061.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:27 Heat of formation + Delta-G solvation = -59.746043 kcal Electronic energy + Delta-G solvation = -23090.824408 eV Core-core repulsion = 19676.963232 eV Total energy + Delta-G solvation = -3413.861176 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.67273 -40.20872 -39.07787 -37.35626 -35.82044 -34.62288 -33.75064 -31.55705 -30.62832 -29.35959 -28.31154 -25.98909 -24.95621 -23.88169 -23.45709 -22.23113 -20.15029 -19.74290 -19.23115 -18.95801 -17.45412 -17.10951 -16.69830 -16.61890 -16.28996 -15.88363 -15.78833 -15.08144 -14.83168 -14.73651 -14.60882 -14.25778 -13.91809 -13.78210 -13.46677 -13.31614 -13.10669 -12.91918 -12.80140 -12.55919 -12.47852 -12.09262 -12.04036 -11.96152 -11.71213 -11.60813 -11.56007 -11.10337 -10.95509 -9.63591 -9.00869 -8.86513 -7.90272 -5.17748 0.02642 0.29740 1.15558 1.51055 1.51793 1.61122 1.67190 2.19652 2.59878 2.71277 2.85347 3.45082 3.59574 3.61580 3.79699 3.91391 4.01683 4.10819 4.27126 4.34201 4.37161 4.46280 4.65069 4.67211 4.75463 4.85229 4.98625 4.99921 5.01942 5.08626 5.17241 5.24127 5.34753 5.43580 5.50073 5.56155 5.61832 5.73734 5.77933 6.27095 6.32432 6.64755 7.39498 8.13578 8.37753 9.33427 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022573 B = 0.003824 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.147206 B = 7320.396063 C = 7599.788238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.143 4.143 3 C 0.080 3.920 4 H 0.169 0.831 5 O -0.299 6.299 6 C 0.076 3.924 7 C -0.104 4.104 8 C -0.066 4.066 9 C 0.204 3.796 10 H 0.059 0.941 11 C -0.151 4.151 12 N -0.733 5.733 13 C -0.234 4.234 14 H 0.078 0.922 15 C -0.073 4.073 16 N -0.969 5.969 17 Si 0.967 3.033 18 H -0.265 1.265 19 H -0.296 1.296 20 H -0.297 1.297 21 C -0.107 4.107 22 C -0.112 4.112 23 C 0.077 3.923 24 N -0.648 5.648 25 C 0.495 3.505 26 O -0.545 6.545 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.150 0.850 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.069 0.931 36 H 0.376 0.624 37 H 0.249 0.751 38 H 0.122 0.878 39 H 0.155 0.845 40 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.821 7.794 16.195 18.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.181 4.181 3 C 0.022 3.978 4 H 0.187 0.813 5 O -0.213 6.213 6 C 0.029 3.971 7 C -0.124 4.124 8 C -0.068 4.068 9 C 0.096 3.904 10 H 0.077 0.923 11 C -0.210 4.210 12 N -0.375 5.375 13 C -0.366 4.366 14 H 0.096 0.904 15 C -0.266 4.266 16 N -0.620 5.620 17 Si 0.797 3.203 18 H -0.189 1.189 19 H -0.224 1.224 20 H -0.224 1.224 21 C -0.126 4.126 22 C -0.132 4.132 23 C -0.018 4.018 24 N -0.295 5.295 25 C 0.283 3.717 26 O -0.423 6.423 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.167 0.833 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.210 0.790 37 H 0.058 0.942 38 H 0.140 0.860 39 H 0.173 0.827 40 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -2.038 7.976 16.747 18.661 hybrid contribution 0.817 -0.983 -0.957 1.597 sum -1.221 6.993 15.791 17.313 Atomic orbital electron populations 1.21670 0.92323 1.02943 1.03107 1.22060 0.99418 0.93041 1.03623 1.23157 0.88764 0.98012 0.87915 0.81349 1.86269 1.58426 1.62725 1.13930 1.18449 0.88484 1.02428 0.87702 1.20416 1.00914 1.02448 0.88589 1.20056 0.94111 0.97637 0.94952 1.19343 0.96421 0.87971 0.86630 0.92342 1.22277 1.01031 0.97486 1.00250 1.42707 1.20519 1.35321 1.38940 1.19666 0.99271 1.09487 1.08194 0.90370 1.25457 0.98426 0.99922 1.02755 1.69805 1.20727 1.27094 1.44383 0.85161 0.78496 0.77711 0.78947 1.18945 1.22370 1.22433 1.20868 0.94605 0.99558 0.97549 1.20760 1.01131 1.01488 0.89837 1.17966 0.91996 1.06047 0.85782 1.43594 1.11498 1.70647 1.03724 1.21733 0.91698 0.74711 0.83533 1.90774 1.75513 1.49313 1.26664 0.91424 0.90552 0.92521 0.92313 0.88844 0.83278 0.93705 0.93699 0.91231 0.79037 0.94182 0.85963 0.82724 0.73760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.81 71.98 0.71 -1.52 16 2 C -0.14 -2.62 5.45 30.60 0.17 -2.45 16 3 C 0.08 1.61 3.20 29.88 0.10 1.70 16 4 H 0.17 2.59 8.14 -2.39 -0.02 2.57 16 5 O -0.30 -7.01 9.68 -93.77 -0.91 -7.92 16 6 C 0.08 1.97 5.83 22.58 0.13 2.10 16 7 C -0.10 -2.88 9.61 22.33 0.21 -2.67 16 8 C -0.07 -2.09 4.96 -19.84 -0.10 -2.19 16 9 C 0.20 7.55 3.09 44.24 0.14 7.68 16 10 H 0.06 2.15 7.94 -2.39 -0.02 2.13 16 11 C -0.15 -4.99 9.47 71.98 0.68 -4.31 16 12 N -0.73 -34.92 5.07 -326.50 -1.65 -36.57 16 13 C -0.23 -12.44 9.93 84.03 0.83 -11.60 16 14 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 15 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 16 N -0.97 -57.61 13.06 21.65 0.28 -57.33 16 17 Si 0.97 44.98 29.55 68.60 2.03 47.01 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 19 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 20 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 21 C -0.11 -3.27 9.04 22.28 0.20 -3.07 16 22 C -0.11 -2.80 9.94 22.36 0.22 -2.58 16 23 C 0.08 1.91 6.58 38.15 0.25 2.17 16 24 N -0.65 -14.32 5.46 -302.91 -1.65 -15.98 16 25 C 0.50 11.80 7.19 87.66 0.63 12.43 16 26 O -0.55 -15.61 17.95 -3.07 -0.06 -15.67 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.06 1.01 7.81 -2.39 -0.02 0.99 16 30 H 0.06 1.29 7.73 -2.39 -0.02 1.27 16 31 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.15 3.64 8.03 -2.91 -0.02 3.62 16 33 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.38 19.06 6.06 -92.71 -0.56 18.50 16 37 H 0.25 14.44 8.31 -92.70 -0.77 13.67 16 38 H 0.12 4.10 6.91 -2.91 -0.02 4.08 16 39 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 40 H 0.42 7.65 8.87 -92.71 -0.82 6.83 16 Total: -1.00 -65.10 336.20 2.36 -62.74 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: -0.32 Total: 31.64 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 4.64 Total: -7.93 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -3.03 Total: -109.88 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.96 Total: -23.59 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -65.10 2.36 -62.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180004061.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.996 kcal (2) G-P(sol) polarization free energy of solvation -65.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds