Wall clock time and date at job start Tue Mar 31 2020 06:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47124 * 2 1 4 4 H 1.09004 * 109.44140 * 305.06089 * 3 2 1 5 5 O 1.42932 * 109.44545 * 64.99652 * 3 2 1 6 6 C 1.35998 * 116.99913 * 74.54731 * 5 3 2 7 7 C 1.38446 * 120.44982 * 211.24306 * 6 5 3 8 8 C 1.38287 * 119.91886 * 181.86893 * 7 6 5 9 9 C 1.50701 * 119.88496 * 179.72779 * 8 7 6 10 10 H 1.09002 * 109.47060 * 19.72677 * 9 8 7 11 11 C 1.52997 * 109.47212 * 259.72622 * 9 8 7 12 12 N 1.46500 * 109.47209 * 139.72655 * 9 8 7 13 13 C 1.36933 * 119.99983 * 204.99924 * 12 9 8 14 14 H 1.08002 * 120.00189 * 0.02562 * 13 12 9 15 15 C 1.38812 * 120.00422 * 179.97438 * 13 12 9 16 16 N 1.31623 * 119.99438 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00488 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47149 * 89.99897 * 17 15 13 19 19 H 1.48501 * 109.46970 * 210.00013 * 17 15 13 20 20 H 1.48501 * 109.47193 * 329.99772 * 17 15 13 21 21 C 1.38285 * 120.23284 * 359.45027 * 8 7 6 22 22 C 1.38265 * 120.17312 * 359.97153 * 21 8 7 23 23 C 1.38519 * 119.88351 * 359.97438 * 22 21 8 24 24 N 1.40150 * 120.64642 * 180.17497 * 23 22 21 25 25 C 1.34954 * 119.23917 * 169.05304 * 24 23 22 26 26 O 1.21295 * 120.15259 * 174.21541 * 25 24 23 27 27 H 1.08996 * 109.46996 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47163 * 300.00003 * 1 2 3 29 29 H 1.09001 * 109.46947 * 60.00191 * 1 2 3 30 30 H 1.08999 * 109.47157 * 239.99440 * 2 1 3 31 31 H 1.09005 * 109.47424 * 119.99753 * 2 1 3 32 32 H 1.08008 * 120.03935 * 1.59408 * 7 6 5 33 33 H 1.08998 * 109.47533 * 59.99628 * 11 9 8 34 34 H 1.08996 * 109.47853 * 179.97438 * 11 9 8 35 35 H 1.09002 * 109.47153 * 299.99998 * 11 9 8 36 36 H 0.96997 * 120.00274 * 24.99818 * 12 9 8 37 37 H 0.97001 * 120.00131 * 179.97438 * 16 15 13 38 38 H 1.08004 * 119.91386 * 179.97438 * 21 8 7 39 39 H 1.08001 * 120.06169 * 179.97438 * 22 21 8 40 40 H 0.97001 * 120.38270 * 349.02428 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6042 1.9814 -0.8414 5 8 1.6615 2.0810 1.2215 6 6 2.3516 1.7321 2.3402 7 6 1.7330 1.7445 3.5787 8 6 2.4554 1.4251 4.7138 9 6 1.7827 1.4447 6.0622 10 1 0.7026 1.3808 5.9303 11 6 2.1319 2.7459 6.7874 12 7 2.2462 0.3038 6.8558 13 6 1.4595 -0.1975 7.8582 14 1 0.4973 0.2478 8.0636 15 6 1.8983 -1.2789 8.6099 16 7 3.0704 -1.8226 8.3587 17 14 0.8250 -1.9633 9.9769 18 1 -0.0604 -3.0217 9.4283 19 1 1.6860 -2.5403 11.0404 20 1 -0.0039 -0.8719 10.5490 21 6 3.7914 1.0821 4.6153 22 6 4.4130 1.0560 3.3805 23 6 3.6947 1.3738 2.2394 24 7 4.3078 1.3489 0.9794 25 6 3.5423 1.4428 -0.1281 26 8 4.0605 1.5286 -1.2214 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 0.6885 2.0076 3.6587 33 1 1.7872 3.5948 6.1970 34 1 1.6451 2.7604 7.7625 35 1 3.2120 2.8098 6.9192 36 1 3.1102 -0.0964 6.6712 37 1 3.3773 -2.5780 8.8841 38 1 4.3508 0.8340 5.5052 39 1 5.4566 0.7883 3.3056 40 1 5.2713 1.2656 0.9041 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180004076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:29 Heat of formation + Delta-G solvation = -40.208605 kcal Electronic energy + Delta-G solvation = -23087.285775 eV Core-core repulsion = 19674.271806 eV Total energy + Delta-G solvation = -3413.013969 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.63929 -39.06262 -37.96817 -36.05247 -34.42692 -33.70848 -32.01879 -30.37912 -29.12593 -28.03613 -27.34526 -24.21626 -23.74642 -22.76218 -22.46635 -20.91035 -19.08074 -18.55325 -17.97166 -17.32005 -16.41014 -15.96132 -15.72508 -15.31152 -14.89800 -14.50673 -14.40837 -13.82948 -13.76091 -13.47908 -13.19568 -13.03718 -12.73134 -12.50903 -12.43624 -12.13400 -11.96642 -11.46658 -11.40044 -11.24140 -11.05986 -10.88108 -10.76033 -10.49259 -10.36668 -10.11703 -10.00183 -9.71793 -8.99726 -8.52167 -7.75973 -7.03814 -5.82170 -3.10996 1.15109 1.42084 2.20786 2.65496 3.20769 3.40961 3.46528 3.47786 3.80690 3.88184 4.45421 4.55522 4.62052 4.64987 4.99105 5.10250 5.19223 5.29790 5.38334 5.43965 5.52062 5.58809 5.69050 5.71771 5.81726 5.89304 6.03694 6.08702 6.10467 6.24446 6.30338 6.44730 6.52983 6.60621 6.72995 6.81824 6.90393 7.08634 7.33789 7.63720 7.66023 8.36093 9.47797 10.02435 10.37606 11.40458 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022649 B = 0.003819 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.983619 B = 7330.949080 C = 7611.720744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.148 4.148 3 C 0.082 3.918 4 H 0.146 0.854 5 O -0.298 6.298 6 C 0.077 3.923 7 C -0.105 4.105 8 C -0.052 4.052 9 C 0.208 3.792 10 H 0.059 0.941 11 C -0.160 4.160 12 N -0.721 5.721 13 C -0.240 4.240 14 H 0.072 0.928 15 C -0.011 4.011 16 N -0.932 5.932 17 Si 0.907 3.093 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.281 1.281 21 C -0.094 4.094 22 C -0.120 4.120 23 C 0.072 3.928 24 N -0.654 5.654 25 C 0.496 3.504 26 O -0.522 6.522 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.137 0.863 33 H 0.039 0.961 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.385 0.615 37 H 0.256 0.744 38 H 0.137 0.863 39 H 0.129 0.871 40 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.902 6.888 -14.840 16.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.186 4.186 3 C 0.022 3.978 4 H 0.163 0.837 5 O -0.212 6.212 6 C 0.031 3.969 7 C -0.125 4.125 8 C -0.054 4.054 9 C 0.098 3.902 10 H 0.077 0.923 11 C -0.221 4.221 12 N -0.364 5.364 13 C -0.371 4.371 14 H 0.090 0.910 15 C -0.207 4.207 16 N -0.581 5.581 17 Si 0.738 3.262 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.207 1.207 21 C -0.113 4.113 22 C -0.140 4.140 23 C -0.022 4.022 24 N -0.300 5.300 25 C 0.283 3.717 26 O -0.397 6.397 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.154 0.846 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.220 0.780 37 H 0.065 0.935 38 H 0.155 0.845 39 H 0.147 0.853 40 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -1.087 7.028 -15.367 16.932 hybrid contribution 0.518 -0.818 0.655 1.169 sum -0.569 6.210 -14.712 15.979 Atomic orbital electron populations 1.21672 0.93407 1.02441 1.02759 1.22074 0.98555 0.93935 1.03993 1.22905 0.89835 0.97039 0.87981 0.83696 1.86260 1.58583 1.62508 1.13873 1.18439 0.88323 1.02708 0.87427 1.20384 1.00412 1.02832 0.88841 1.20318 0.93704 0.95650 0.95728 1.19202 0.96378 0.89011 0.85596 0.92326 1.22429 1.01414 0.97387 1.00827 1.42516 1.21662 1.34120 1.38056 1.19242 0.99536 1.10363 1.07957 0.90986 1.24730 0.97161 0.98768 1.00087 1.69653 1.19455 1.26058 1.42886 0.86192 0.79385 0.78942 0.81681 1.21712 1.21794 1.20693 1.20934 0.94748 0.98582 0.97035 1.20586 0.99968 1.02657 0.90794 1.17913 0.92176 1.06796 0.85365 1.43622 1.10823 1.71260 1.04323 1.21430 0.90942 0.75451 0.83900 1.90778 1.75058 1.48124 1.25779 0.91946 0.91443 0.92348 0.89929 0.90506 0.84557 0.94174 0.92272 0.93242 0.77992 0.93460 0.84475 0.85274 0.74852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.81 37.16 0.36 -0.93 16 2 C -0.15 -1.50 5.44 -26.73 -0.15 -1.64 16 3 C 0.08 0.92 3.19 -27.84 -0.09 0.83 16 4 H 0.15 1.34 8.14 -51.93 -0.42 0.91 16 5 O -0.30 -3.83 9.69 -19.74 -0.19 -4.02 16 6 C 0.08 1.07 5.84 -39.08 -0.23 0.84 16 7 C -0.11 -1.53 9.61 -39.49 -0.38 -1.91 16 8 C -0.05 -0.85 4.96 -104.59 -0.52 -1.36 16 9 C 0.21 3.88 3.09 -69.08 -0.21 3.66 16 10 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 11 C -0.16 -2.72 9.47 37.16 0.35 -2.37 16 12 N -0.72 -16.99 5.07 -54.55 -0.28 -17.27 16 13 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 14 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 15 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 16 N -0.93 -27.14 13.06 55.49 0.72 -26.41 16 17 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.09 -1.46 9.04 -39.55 -0.36 -1.81 16 22 C -0.12 -1.58 9.93 -39.47 -0.39 -1.97 16 23 C 0.07 0.96 6.57 -83.53 -0.55 0.41 16 24 N -0.65 -7.87 5.46 -9.70 -0.05 -7.92 16 25 C 0.50 6.40 7.18 -10.87 -0.08 6.33 16 26 O -0.52 -7.94 17.95 5.54 0.10 -7.84 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.67 7.82 -51.93 -0.41 0.26 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.90 7.72 -51.93 -0.40 0.50 16 32 H 0.14 1.79 8.03 -52.48 -0.42 1.37 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.38 9.52 6.06 -40.82 -0.25 9.27 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.14 2.24 6.91 -52.48 -0.36 1.88 16 39 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.41 4.15 8.87 -40.82 -0.36 3.79 16 LS Contribution 336.21 15.07 5.07 5.07 Total: -1.00 -30.62 336.21 -7.67 -38.29 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -5.54 Total: 10.27 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -2.48 Total: -6.85 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: 0.40 Total: -51.60 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -0.09 Total: -11.86 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.62 -7.67 -38.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180004076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.918 kcal (2) G-P(sol) polarization free energy of solvation -30.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds