Wall clock time and date at job start Tue Mar 31 2020 06:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47124 * 2 1 4 4 H 1.09004 * 109.44140 * 305.06089 * 3 2 1 5 5 O 1.42932 * 109.44545 * 64.99652 * 3 2 1 6 6 C 1.35998 * 116.99913 * 74.54731 * 5 3 2 7 7 C 1.38446 * 120.44982 * 211.24306 * 6 5 3 8 8 C 1.38287 * 119.91886 * 181.86893 * 7 6 5 9 9 C 1.50701 * 119.88496 * 179.72779 * 8 7 6 10 10 H 1.09002 * 109.47060 * 19.72677 * 9 8 7 11 11 C 1.52997 * 109.47212 * 259.72622 * 9 8 7 12 12 N 1.46500 * 109.47209 * 139.72655 * 9 8 7 13 13 C 1.36933 * 119.99983 * 204.99924 * 12 9 8 14 14 H 1.08002 * 120.00189 * 0.02562 * 13 12 9 15 15 C 1.38812 * 120.00422 * 179.97438 * 13 12 9 16 16 N 1.31623 * 119.99438 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00488 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47149 * 89.99897 * 17 15 13 19 19 H 1.48501 * 109.46970 * 210.00013 * 17 15 13 20 20 H 1.48501 * 109.47193 * 329.99772 * 17 15 13 21 21 C 1.38285 * 120.23284 * 359.45027 * 8 7 6 22 22 C 1.38265 * 120.17312 * 359.97153 * 21 8 7 23 23 C 1.38519 * 119.88351 * 359.97438 * 22 21 8 24 24 N 1.40150 * 120.64642 * 180.17497 * 23 22 21 25 25 C 1.34954 * 119.23917 * 169.05304 * 24 23 22 26 26 O 1.21295 * 120.15259 * 174.21541 * 25 24 23 27 27 H 1.08996 * 109.46996 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47163 * 300.00003 * 1 2 3 29 29 H 1.09001 * 109.46947 * 60.00191 * 1 2 3 30 30 H 1.08999 * 109.47157 * 239.99440 * 2 1 3 31 31 H 1.09005 * 109.47424 * 119.99753 * 2 1 3 32 32 H 1.08008 * 120.03935 * 1.59408 * 7 6 5 33 33 H 1.08998 * 109.47533 * 59.99628 * 11 9 8 34 34 H 1.08996 * 109.47853 * 179.97438 * 11 9 8 35 35 H 1.09002 * 109.47153 * 299.99998 * 11 9 8 36 36 H 0.96997 * 120.00274 * 24.99818 * 12 9 8 37 37 H 0.97001 * 120.00131 * 179.97438 * 16 15 13 38 38 H 1.08004 * 119.91386 * 179.97438 * 21 8 7 39 39 H 1.08001 * 120.06169 * 179.97438 * 22 21 8 40 40 H 0.97001 * 120.38270 * 349.02428 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6042 1.9814 -0.8414 5 8 1.6615 2.0810 1.2215 6 6 2.3516 1.7321 2.3402 7 6 1.7330 1.7445 3.5787 8 6 2.4554 1.4251 4.7138 9 6 1.7827 1.4447 6.0622 10 1 0.7026 1.3808 5.9303 11 6 2.1319 2.7459 6.7874 12 7 2.2462 0.3038 6.8558 13 6 1.4595 -0.1975 7.8582 14 1 0.4973 0.2478 8.0636 15 6 1.8983 -1.2789 8.6099 16 7 3.0704 -1.8226 8.3587 17 14 0.8250 -1.9633 9.9769 18 1 -0.0604 -3.0217 9.4283 19 1 1.6860 -2.5403 11.0404 20 1 -0.0039 -0.8719 10.5490 21 6 3.7914 1.0821 4.6153 22 6 4.4130 1.0560 3.3805 23 6 3.6947 1.3738 2.2394 24 7 4.3078 1.3489 0.9794 25 6 3.5423 1.4428 -0.1281 26 8 4.0605 1.5286 -1.2214 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 0.6885 2.0076 3.6587 33 1 1.7872 3.5948 6.1970 34 1 1.6451 2.7604 7.7625 35 1 3.2120 2.8098 6.9192 36 1 3.1102 -0.0964 6.6712 37 1 3.3773 -2.5780 8.8841 38 1 4.3508 0.8340 5.5052 39 1 5.4566 0.7883 3.3056 40 1 5.2713 1.2656 0.9041 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180004076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:29 Heat of formation + Delta-G solvation = -59.674014 kcal Electronic energy + Delta-G solvation = -23088.129858 eV Core-core repulsion = 19674.271806 eV Total energy + Delta-G solvation = -3413.858052 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.67387 -40.20783 -39.07800 -37.35478 -35.82047 -34.62702 -33.74980 -31.55768 -30.62702 -29.36169 -28.31197 -25.98593 -24.95663 -23.87767 -23.45830 -22.23220 -20.15240 -19.74444 -19.23055 -18.95782 -17.45170 -17.11125 -16.70120 -16.62056 -16.28413 -15.88474 -15.78223 -15.08461 -14.83235 -14.73267 -14.60730 -14.25926 -13.91836 -13.78323 -13.46848 -13.31705 -13.11229 -12.92013 -12.76303 -12.55897 -12.47807 -12.13806 -12.04227 -11.96221 -11.71132 -11.60785 -11.56208 -11.10519 -10.94055 -9.63583 -9.00676 -8.86383 -7.89974 -5.17540 0.02564 0.30014 1.15608 1.51760 1.52171 1.60418 1.66995 2.19577 2.60078 2.70852 2.85600 3.45161 3.59355 3.61137 3.79643 3.91405 4.01787 4.10836 4.27215 4.34121 4.37111 4.46284 4.64963 4.67177 4.75405 4.85308 4.98573 4.99797 5.01910 5.08530 5.17244 5.24138 5.34625 5.43641 5.50076 5.55931 5.61823 5.73633 5.77921 6.27141 6.32578 6.64829 7.39633 8.13766 8.37975 9.33515 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022649 B = 0.003819 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.983619 B = 7330.949080 C = 7611.720744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.143 4.143 3 C 0.080 3.920 4 H 0.170 0.830 5 O -0.299 6.299 6 C 0.076 3.924 7 C -0.105 4.105 8 C -0.066 4.066 9 C 0.204 3.796 10 H 0.058 0.942 11 C -0.151 4.151 12 N -0.733 5.733 13 C -0.236 4.236 14 H 0.078 0.922 15 C -0.073 4.073 16 N -0.969 5.969 17 Si 0.968 3.032 18 H -0.290 1.290 19 H -0.299 1.299 20 H -0.269 1.269 21 C -0.107 4.107 22 C -0.112 4.112 23 C 0.077 3.923 24 N -0.648 5.648 25 C 0.495 3.505 26 O -0.545 6.545 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.149 0.851 33 H 0.069 0.931 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.376 0.624 37 H 0.249 0.751 38 H 0.123 0.877 39 H 0.155 0.845 40 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.751 7.675 -16.212 18.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.182 4.182 3 C 0.021 3.979 4 H 0.187 0.813 5 O -0.213 6.213 6 C 0.030 3.970 7 C -0.124 4.124 8 C -0.067 4.067 9 C 0.096 3.904 10 H 0.076 0.924 11 C -0.210 4.210 12 N -0.375 5.375 13 C -0.368 4.368 14 H 0.096 0.904 15 C -0.265 4.265 16 N -0.620 5.620 17 Si 0.797 3.203 18 H -0.217 1.217 19 H -0.226 1.226 20 H -0.194 1.194 21 C -0.126 4.126 22 C -0.132 4.132 23 C -0.018 4.018 24 N -0.295 5.295 25 C 0.283 3.717 26 O -0.423 6.423 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.167 0.833 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.210 0.790 37 H 0.058 0.942 38 H 0.140 0.860 39 H 0.173 0.827 40 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -1.958 7.862 -16.756 18.612 hybrid contribution 0.786 -0.982 0.944 1.573 sum -1.172 6.881 -15.811 17.283 Atomic orbital electron populations 1.21669 0.92333 1.02946 1.03104 1.22059 0.99418 0.93045 1.03630 1.23160 0.88833 0.98022 0.87840 0.81337 1.86262 1.58434 1.62657 1.13978 1.18474 0.88611 1.02226 0.87702 1.20413 1.00890 1.02575 0.88553 1.20056 0.94109 0.97628 0.94938 1.19342 0.96474 0.87983 0.86563 0.92355 1.22274 1.01014 0.97484 1.00262 1.42697 1.21161 1.35346 1.38273 1.19630 0.99635 1.09624 1.07878 0.90405 1.25460 0.98497 0.99822 1.02754 1.69802 1.21220 1.26752 1.44218 0.85221 0.77755 0.78338 0.78953 1.21705 1.22564 1.19385 1.20870 0.94684 0.99541 0.97506 1.20740 1.01111 1.01530 0.89795 1.17951 0.92083 1.06036 0.85765 1.43592 1.11445 1.70678 1.03737 1.21732 0.91677 0.74724 0.83541 1.90774 1.75625 1.49316 1.26545 0.91423 0.92537 0.90542 0.88834 0.92303 0.83302 0.91241 0.93721 0.93697 0.79033 0.94177 0.85951 0.82730 0.73760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.81 71.98 0.71 -1.52 16 2 C -0.14 -2.62 5.44 30.59 0.17 -2.45 16 3 C 0.08 1.61 3.19 29.87 0.10 1.70 16 4 H 0.17 2.59 8.14 -2.39 -0.02 2.57 16 5 O -0.30 -7.01 9.69 -93.53 -0.91 -7.92 16 6 C 0.08 1.99 5.84 22.59 0.13 2.12 16 7 C -0.10 -2.91 9.61 22.33 0.21 -2.69 16 8 C -0.07 -2.09 4.96 -19.84 -0.10 -2.19 16 9 C 0.20 7.56 3.09 44.24 0.14 7.70 16 10 H 0.06 2.15 7.93 -2.39 -0.02 2.13 16 11 C -0.15 -5.00 9.47 71.98 0.68 -4.31 16 12 N -0.73 -34.95 5.07 -326.50 -1.65 -36.60 16 13 C -0.24 -12.53 9.93 84.03 0.83 -11.70 16 14 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 15 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 16 N -0.97 -57.60 13.06 21.65 0.28 -57.32 16 17 Si 0.97 44.97 29.55 68.60 2.03 47.00 16 18 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 19 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 C -0.11 -3.28 9.04 22.29 0.20 -3.08 16 22 C -0.11 -2.79 9.93 22.34 0.22 -2.57 16 23 C 0.08 1.90 6.57 38.15 0.25 2.16 16 24 N -0.65 -14.31 5.46 -302.90 -1.65 -15.96 16 25 C 0.50 11.79 7.18 87.65 0.63 12.42 16 26 O -0.55 -15.60 17.95 -3.08 -0.06 -15.66 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 1.01 7.82 -2.39 -0.02 0.99 16 29 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.29 7.72 -2.38 -0.02 1.27 16 32 H 0.15 3.65 8.03 -2.91 -0.02 3.63 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.38 19.08 6.06 -92.71 -0.56 18.51 16 37 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 38 H 0.12 4.11 6.91 -2.91 -0.02 4.09 16 39 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 40 H 0.42 7.64 8.87 -92.71 -0.82 6.82 16 Total: -1.00 -65.07 336.21 2.36 -62.70 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: -0.32 Total: 31.79 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 4.64 Total: -8.02 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -3.03 Total: -109.89 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.96 Total: -23.58 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -65.07 2.36 -62.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180004076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.029 kcal (2) G-P(sol) polarization free energy of solvation -65.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds