Wall clock time and date at job start Tue Mar 31 2020 06:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47711 * 2 1 4 4 H 1.08997 * 109.46809 * 54.99867 * 3 2 1 5 5 C 1.50693 * 109.47094 * 175.00088 * 3 2 1 6 6 H 1.07999 * 119.99899 * 120.00222 * 5 3 2 7 7 C 1.37879 * 120.00305 * 299.99642 * 5 3 2 8 8 N 1.31510 * 119.99948 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00010 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47257 * 90.00207 * 9 7 5 11 11 H 1.48503 * 109.47010 * 210.00115 * 9 7 5 12 12 H 1.48499 * 109.47278 * 330.00198 * 9 7 5 13 13 N 1.46493 * 109.46766 * 295.00360 * 3 2 1 14 14 C 1.34782 * 120.00247 * 84.99825 * 13 3 2 15 15 O 1.21550 * 119.99791 * 359.97438 * 14 13 3 16 16 C 1.47863 * 119.99739 * 179.97438 * 14 13 3 17 17 C 1.39696 * 120.07597 * 359.97438 * 16 14 13 18 18 C 1.38055 * 120.14297 * 179.97438 * 17 16 14 19 19 C 1.38096 * 120.30134 * 0.02596 * 18 17 16 20 20 C 1.39670 * 120.14094 * 359.97438 * 19 18 17 21 21 C 1.47859 * 120.07306 * 179.97438 * 20 19 18 22 22 O 1.21545 * 119.99999 * 180.02562 * 21 20 19 23 23 N 1.34779 * 120.00186 * 0.02562 * 21 20 19 24 24 C 1.46490 * 120.00091 * 179.97438 * 23 21 20 25 25 C 1.39292 * 120.06753 * 180.02562 * 16 14 13 26 26 H 1.08993 * 109.46792 * 59.99658 * 1 2 3 27 27 H 1.08992 * 109.47431 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46846 * 300.00109 * 1 2 3 29 29 H 1.09000 * 109.46846 * 239.99891 * 2 1 3 30 30 H 1.09004 * 109.47242 * 120.00541 * 2 1 3 31 31 H 0.97002 * 120.00639 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00056 * 264.99623 * 13 3 2 33 33 H 1.08004 * 119.92985 * 0.02562 * 17 16 14 34 34 H 1.08001 * 119.85101 * 179.74672 * 18 17 16 35 35 H 1.08003 * 119.93149 * 179.97438 * 19 18 17 36 36 H 0.97003 * 119.99307 * 359.97438 * 23 21 20 37 37 H 1.09007 * 109.47190 * 299.99656 * 24 23 21 38 38 H 1.09002 * 109.47588 * 59.99667 * 24 23 21 39 39 H 1.09006 * 109.47361 * 179.97438 * 24 23 21 40 40 H 1.08005 * 120.14816 * 359.97438 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4441 0.1238 6 1 4.1473 1.8886 -0.6523 7 6 4.1434 0.8782 1.2280 8 7 3.4063 0.3365 2.1729 9 14 6.0050 0.8809 1.3817 10 1 6.4419 2.1137 2.0847 11 1 6.4396 -0.3102 2.1548 12 1 6.6136 0.8412 0.0277 13 7 1.6526 2.0974 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3412 2.6319 -0.4322 16 6 0.0443 3.3259 -2.6302 17 6 0.9357 3.3646 -3.7051 18 6 0.5720 3.9814 -4.8855 19 6 -0.6735 4.5644 -5.0120 20 6 -1.5743 4.5328 -3.9450 21 6 -2.9072 5.1579 -4.0819 22 8 -3.6899 5.1301 -3.1524 23 7 -3.2544 5.7586 -5.2374 24 6 -4.5752 6.3774 -5.3733 25 6 -1.2131 3.9128 -2.7506 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8293 -0.0620 2.9495 32 1 2.2720 2.1230 -1.9977 33 1 1.9112 2.9103 -3.6129 34 1 1.2663 4.0122 -5.7121 35 1 -0.9517 5.0457 -5.9380 36 1 -2.6296 5.7811 -5.9791 37 1 -5.3473 5.6219 -5.2269 38 1 -4.6879 7.1616 -4.6246 39 1 -4.6734 6.8095 -6.3692 40 1 -1.9058 3.8860 -1.9224 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183906207.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:20 Heat of formation + Delta-G solvation = -51.272014 kcal Electronic energy + Delta-G solvation = -22524.193313 eV Core-core repulsion = 19110.699599 eV Total energy + Delta-G solvation = -3413.493714 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.42737 -39.30433 -37.76633 -35.10303 -34.89937 -32.66662 -31.71168 -31.12313 -30.48098 -27.37408 -26.82486 -24.14993 -23.39311 -22.53647 -21.18992 -20.19742 -19.39185 -18.63632 -16.88660 -16.43440 -16.16483 -15.66742 -15.44012 -15.38416 -14.73261 -14.55296 -14.22157 -14.02032 -13.81780 -13.35669 -13.13383 -12.70600 -12.63147 -12.55944 -12.04310 -11.91052 -11.52222 -11.35209 -11.24858 -10.98157 -10.85456 -10.33340 -10.20542 -10.16475 -9.63504 -9.47221 -9.14811 -9.09721 -9.05947 -9.03859 -8.51205 -7.85612 -6.13513 -4.23356 0.60111 1.06749 2.59053 2.90898 3.23621 3.30383 3.31683 3.39478 3.97118 4.10428 4.34652 4.43910 4.61607 4.75417 4.88716 5.09105 5.17705 5.20681 5.23259 5.35409 5.49696 5.59906 5.80039 6.05900 6.12518 6.18792 6.30338 6.40768 6.47492 6.66476 6.67855 7.04985 7.18068 7.20849 7.35505 7.41857 7.60650 7.71487 7.88625 7.98407 8.16706 8.61209 8.75097 9.06903 9.43801 10.91845 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029935 B = 0.003338 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.149954 B = 8386.195846 C = 8937.320165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.700 5.700 14 C 0.540 3.460 15 O -0.538 6.538 16 C -0.126 4.126 17 C -0.062 4.062 18 C -0.134 4.134 19 C -0.074 4.074 20 C -0.150 4.150 21 C 0.560 3.440 22 O -0.529 6.529 23 N -0.735 5.735 24 C 0.088 3.912 25 C -0.005 4.005 26 H 0.038 0.962 27 H 0.023 0.977 28 H 0.050 0.950 29 H 0.031 0.969 30 H 0.100 0.900 31 H 0.265 0.735 32 H 0.387 0.613 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.401 0.599 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.335 8.752 -18.923 22.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.348 5.348 14 C 0.325 3.675 15 O -0.417 6.417 16 C -0.129 4.129 17 C -0.081 4.081 18 C -0.152 4.152 19 C -0.093 4.093 20 C -0.153 4.153 21 C 0.347 3.653 22 O -0.406 6.406 23 N -0.388 5.388 24 C -0.056 4.056 25 C -0.025 4.025 26 H 0.057 0.943 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.118 0.882 31 H 0.075 0.925 32 H 0.220 0.780 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.144 0.856 36 H 0.235 0.765 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.443 8.594 -17.352 21.124 hybrid contribution 1.644 0.008 -0.738 1.803 sum -6.799 8.602 -18.091 21.154 Atomic orbital electron populations 1.21849 0.98287 0.98147 1.01313 1.21938 0.92659 0.99665 1.02338 1.18841 0.94295 0.89259 0.80780 0.93087 1.21206 0.90598 1.39186 1.06381 0.92088 1.24884 0.98622 0.94766 0.95374 1.69892 1.35164 1.37449 1.09321 0.86451 0.84813 0.77666 0.78180 1.20565 1.21061 1.19864 1.46459 1.14210 1.55460 1.18659 1.18082 0.83181 0.79574 0.86686 1.90770 1.51395 1.59804 1.39741 1.20376 0.95155 1.01664 0.95705 1.21661 0.99042 0.95299 0.92125 1.21018 0.96577 0.99481 0.98112 1.21351 0.93532 0.97187 0.97234 1.19793 0.94738 1.04721 0.96018 1.18305 0.86747 0.77879 0.82329 1.90808 1.52338 1.58511 1.38922 1.45690 1.18273 1.58869 1.15953 1.21550 0.83977 0.98174 1.01888 1.21421 0.94877 0.89857 0.96352 0.94303 0.95768 0.93056 0.94998 0.88196 0.92507 0.77957 0.84732 0.84846 0.85648 0.76460 0.92046 0.92047 0.90598 0.83319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.51 37.16 0.32 -2.83 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.73 2.24 -69.09 -0.15 6.58 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 5 C -0.54 -13.91 8.73 -34.44 -0.30 -14.21 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.54 11.29 55.43 0.63 -23.91 16 9 Si 0.90 20.37 29.54 -169.99 -5.02 15.34 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 N -0.70 -14.36 4.97 -55.88 -0.28 -14.64 16 14 C 0.54 10.96 6.34 -12.32 -0.08 10.88 16 15 O -0.54 -12.89 13.47 5.32 0.07 -12.82 16 16 C -0.13 -2.01 5.87 -105.02 -0.62 -2.62 16 17 C -0.06 -0.76 9.54 -39.10 -0.37 -1.13 16 18 C -0.13 -1.25 10.02 -39.70 -0.40 -1.64 16 19 C -0.07 -0.67 9.54 -39.10 -0.37 -1.05 16 20 C -0.15 -1.89 5.87 -105.02 -0.62 -2.50 16 21 C 0.56 7.24 7.77 -12.32 -0.10 7.14 16 22 O -0.53 -9.07 16.34 5.33 0.09 -8.98 16 23 N -0.74 -6.18 5.66 -68.04 -0.39 -6.56 16 24 C 0.09 0.61 10.70 59.84 0.64 1.25 16 25 C -0.01 -0.08 9.14 -38.78 -0.35 -0.44 16 26 H 0.04 0.86 5.64 -51.93 -0.29 0.57 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.05 1.24 7.84 -51.93 -0.41 0.83 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.39 6.74 6.56 -40.82 -0.27 6.47 16 33 H 0.13 1.43 6.39 -52.48 -0.34 1.09 16 34 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.13 0.64 6.39 -52.48 -0.34 0.30 16 36 H 0.40 2.03 6.85 -40.82 -0.28 1.76 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.15 2.68 7.23 -52.48 -0.38 2.30 16 LS Contribution 332.86 15.07 5.02 5.02 Total: -1.00 -33.38 332.86 -7.60 -40.99 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -5.08 Total: 7.70 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -2.64 Total: -2.13 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: -0.04 Total: -45.11 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: 0.16 Total: -21.80 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.38 -7.60 -40.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183906207.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.287 kcal (2) G-P(sol) polarization free energy of solvation -33.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds