Wall clock time and date at job start Tue Mar 31 2020 06:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47711 * 2 1 4 4 H 1.08997 * 109.46809 * 54.99867 * 3 2 1 5 5 C 1.50693 * 109.47094 * 175.00088 * 3 2 1 6 6 H 1.07999 * 119.99899 * 120.00222 * 5 3 2 7 7 C 1.37879 * 120.00305 * 299.99642 * 5 3 2 8 8 N 1.31510 * 119.99948 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00010 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47257 * 90.00207 * 9 7 5 11 11 H 1.48503 * 109.47010 * 210.00115 * 9 7 5 12 12 H 1.48499 * 109.47278 * 330.00198 * 9 7 5 13 13 N 1.46493 * 109.46766 * 295.00360 * 3 2 1 14 14 C 1.34782 * 120.00247 * 84.99825 * 13 3 2 15 15 O 1.21550 * 119.99791 * 359.97438 * 14 13 3 16 16 C 1.47863 * 119.99739 * 179.97438 * 14 13 3 17 17 C 1.39696 * 120.07597 * 359.97438 * 16 14 13 18 18 C 1.38055 * 120.14297 * 179.97438 * 17 16 14 19 19 C 1.38096 * 120.30134 * 0.02596 * 18 17 16 20 20 C 1.39670 * 120.14094 * 359.97438 * 19 18 17 21 21 C 1.47859 * 120.07306 * 179.97438 * 20 19 18 22 22 O 1.21545 * 119.99999 * 180.02562 * 21 20 19 23 23 N 1.34779 * 120.00186 * 0.02562 * 21 20 19 24 24 C 1.46490 * 120.00091 * 179.97438 * 23 21 20 25 25 C 1.39292 * 120.06753 * 180.02562 * 16 14 13 26 26 H 1.08993 * 109.46792 * 59.99658 * 1 2 3 27 27 H 1.08992 * 109.47431 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46846 * 300.00109 * 1 2 3 29 29 H 1.09000 * 109.46846 * 239.99891 * 2 1 3 30 30 H 1.09004 * 109.47242 * 120.00541 * 2 1 3 31 31 H 0.97002 * 120.00639 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00056 * 264.99623 * 13 3 2 33 33 H 1.08004 * 119.92985 * 0.02562 * 17 16 14 34 34 H 1.08001 * 119.85101 * 179.74672 * 18 17 16 35 35 H 1.08003 * 119.93149 * 179.97438 * 19 18 17 36 36 H 0.97003 * 119.99307 * 359.97438 * 23 21 20 37 37 H 1.09007 * 109.47190 * 299.99656 * 24 23 21 38 38 H 1.09002 * 109.47588 * 59.99667 * 24 23 21 39 39 H 1.09006 * 109.47361 * 179.97438 * 24 23 21 40 40 H 1.08005 * 120.14816 * 359.97438 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4441 0.1238 6 1 4.1473 1.8886 -0.6523 7 6 4.1434 0.8782 1.2280 8 7 3.4063 0.3365 2.1729 9 14 6.0050 0.8809 1.3817 10 1 6.4419 2.1137 2.0847 11 1 6.4396 -0.3102 2.1548 12 1 6.6136 0.8412 0.0277 13 7 1.6526 2.0974 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3412 2.6319 -0.4322 16 6 0.0443 3.3259 -2.6302 17 6 0.9357 3.3646 -3.7051 18 6 0.5720 3.9814 -4.8855 19 6 -0.6735 4.5644 -5.0120 20 6 -1.5743 4.5328 -3.9450 21 6 -2.9072 5.1579 -4.0819 22 8 -3.6899 5.1301 -3.1524 23 7 -3.2544 5.7586 -5.2374 24 6 -4.5752 6.3774 -5.3733 25 6 -1.2131 3.9128 -2.7506 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8293 -0.0620 2.9495 32 1 2.2720 2.1230 -1.9977 33 1 1.9112 2.9103 -3.6129 34 1 1.2663 4.0122 -5.7121 35 1 -0.9517 5.0457 -5.9380 36 1 -2.6296 5.7811 -5.9791 37 1 -5.3473 5.6219 -5.2269 38 1 -4.6879 7.1616 -4.6246 39 1 -4.6734 6.8095 -6.3692 40 1 -1.9058 3.8860 -1.9224 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183906207.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:20 Heat of formation + Delta-G solvation = -76.174783 kcal Electronic energy + Delta-G solvation = -22525.273178 eV Core-core repulsion = 19110.699599 eV Total energy + Delta-G solvation = -3414.573580 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.52841 -40.67819 -38.95421 -36.96094 -35.80270 -34.44355 -33.29108 -32.16331 -31.92738 -29.02789 -27.86491 -25.52268 -24.79448 -23.89998 -22.32335 -21.69245 -21.03100 -19.88447 -18.42460 -17.56403 -17.37810 -17.03849 -16.85924 -16.40930 -16.24171 -16.22193 -15.42900 -15.23835 -14.76493 -14.67586 -14.58693 -14.22040 -13.91926 -13.58482 -13.23888 -13.20328 -13.16468 -12.88997 -12.87436 -12.68934 -12.41655 -12.16991 -12.07382 -11.60970 -11.23297 -11.07005 -10.81359 -10.53574 -10.36096 -10.09489 -9.98511 -9.65312 -8.15865 -6.33914 -0.36400 0.01367 1.46018 1.46640 1.57175 1.58397 2.09564 2.13735 2.35355 2.58463 2.89709 3.13959 3.62379 3.74389 3.85103 4.07862 4.13331 4.36977 4.44396 4.46241 4.53795 4.62040 4.63727 4.73648 4.89804 4.96095 5.03621 5.15819 5.21157 5.27173 5.29206 5.34143 5.41128 5.53104 5.59433 5.73172 5.78777 5.91665 6.14711 6.46649 6.73358 6.92246 7.14041 7.32061 7.51297 8.89890 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029935 B = 0.003338 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.149954 B = 8386.195846 C = 8937.320165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.119 4.119 3 C 0.277 3.723 4 H -0.004 1.004 5 C -0.547 4.547 6 H 0.076 0.924 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.973 3.027 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.256 1.256 13 N -0.694 5.694 14 C 0.536 3.464 15 O -0.589 6.589 16 C -0.151 4.151 17 C -0.057 4.057 18 C -0.115 4.115 19 C -0.045 4.045 20 C -0.157 4.157 21 C 0.553 3.447 22 O -0.587 6.587 23 N -0.711 5.711 24 C 0.082 3.918 25 C -0.030 4.030 26 H 0.039 0.961 27 H 0.047 0.953 28 H 0.023 0.977 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.265 0.735 32 H 0.405 0.595 33 H 0.152 0.848 34 H 0.185 0.815 35 H 0.180 0.820 36 H 0.421 0.579 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.121 0.879 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.411 9.813 -23.957 26.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.158 4.158 3 C 0.174 3.826 4 H 0.014 0.986 5 C -0.585 4.585 6 H 0.094 0.906 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.797 3.203 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.180 1.180 13 N -0.343 5.343 14 C 0.324 3.676 15 O -0.471 6.471 16 C -0.154 4.154 17 C -0.076 4.076 18 C -0.133 4.133 19 C -0.063 4.063 20 C -0.160 4.160 21 C 0.341 3.659 22 O -0.468 6.468 23 N -0.364 5.364 24 C -0.061 4.061 25 C -0.051 4.051 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.241 0.759 33 H 0.169 0.831 34 H 0.202 0.798 35 H 0.197 0.803 36 H 0.260 0.740 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.140 0.860 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.495 9.682 -22.492 25.334 hybrid contribution 0.962 -0.234 0.718 1.223 sum -5.533 9.449 -21.773 24.372 Atomic orbital electron populations 1.21690 0.97392 0.99137 1.00016 1.21785 0.93348 0.99135 1.01578 1.18426 0.93981 0.89159 0.81063 0.98637 1.21560 0.91034 1.39022 1.06903 0.90575 1.25814 1.03518 0.94312 0.94971 1.70058 1.37221 1.38312 1.09904 0.85334 0.78839 0.77306 0.78788 1.20590 1.21095 1.17983 1.46145 1.14924 1.55437 1.17799 1.18810 0.82247 0.78702 0.87879 1.90736 1.52722 1.61580 1.42090 1.19935 0.96478 1.04053 0.94970 1.21915 0.98746 0.95090 0.91857 1.21573 0.97086 0.96768 0.97832 1.21929 0.92187 0.94760 0.97419 1.19840 0.95572 1.04694 0.95941 1.18511 0.86501 0.77982 0.82907 1.90785 1.53905 1.60921 1.41191 1.45551 1.19141 1.56806 1.14865 1.21753 0.82751 0.97488 1.04136 1.21173 0.94583 0.92273 0.97039 0.94185 0.93402 0.95815 0.93600 0.90803 0.92594 0.75880 0.83074 0.79760 0.80251 0.74018 0.93224 0.93266 0.86035 0.87625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.96 8.51 71.98 0.61 -5.35 16 2 C -0.12 -6.02 5.45 30.59 0.17 -5.86 16 3 C 0.28 14.46 2.24 44.24 0.10 14.56 16 4 H 0.00 -0.27 7.58 -2.39 -0.02 -0.29 16 5 C -0.55 -28.75 8.73 25.60 0.22 -28.53 16 6 H 0.08 3.67 7.74 -2.91 -0.02 3.65 16 7 C 0.01 0.75 5.29 84.66 0.45 1.19 16 8 N -0.92 -52.89 11.29 21.45 0.24 -52.64 16 9 Si 0.97 41.67 29.54 68.60 2.03 43.70 16 10 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 13 N -0.69 -29.25 4.97 -448.98 -2.23 -31.48 16 14 C 0.54 23.01 6.34 86.79 0.55 23.56 16 15 O -0.59 -30.91 13.47 -3.87 -0.05 -30.96 16 16 C -0.15 -4.91 5.87 -20.12 -0.12 -5.03 16 17 C -0.06 -1.22 9.54 22.58 0.22 -1.01 16 18 C -0.12 -1.47 10.02 22.19 0.22 -1.24 16 19 C -0.04 -0.58 9.54 22.58 0.22 -0.36 16 20 C -0.16 -3.77 5.87 -20.12 -0.12 -3.88 16 21 C 0.55 13.99 7.77 86.79 0.67 14.66 16 22 O -0.59 -21.32 16.34 -3.86 -0.06 -21.38 16 23 N -0.71 -9.82 5.66 -487.47 -2.76 -12.58 16 24 C 0.08 0.94 10.70 127.77 1.37 2.31 16 25 C -0.03 -1.01 9.14 22.79 0.21 -0.80 16 26 H 0.04 1.87 5.64 -2.39 -0.01 1.85 16 27 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.02 1.21 7.84 -2.39 -0.02 1.19 16 29 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.07 4.14 5.95 -2.38 -0.01 4.12 16 31 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 32 H 0.40 13.80 6.56 -92.71 -0.61 13.19 16 33 H 0.15 2.66 6.39 -2.91 -0.02 2.64 16 34 H 0.19 0.68 8.06 -2.91 -0.02 0.66 16 35 H 0.18 0.40 6.39 -2.91 -0.02 0.38 16 36 H 0.42 2.03 6.85 -92.71 -0.64 1.40 16 37 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.12 0.31 8.14 -2.38 -0.02 0.29 16 40 H 0.11 4.35 7.23 -2.91 -0.02 4.33 16 Total: -1.00 -82.39 332.86 1.77 -80.62 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -0.16 Total: 20.48 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 4.77 Total: 4.23 kcal Atomic # 7 Polarization: -91.95 SS G_CDS: -4.75 Total: -96.70 kcal Atomic # 8 Polarization: -52.22 SS G_CDS: -0.12 Total: -52.34 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -82.39 1.77 -80.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183906207.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.446 kcal (2) G-P(sol) polarization free energy of solvation -82.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds