Wall clock time and date at job start Tue Mar 31 2020 06:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47523 * 2 1 4 4 H 1.09002 * 109.46870 * 305.40624 * 3 2 1 5 5 C 1.50697 * 109.47458 * 185.40687 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73730 * 5 3 2 7 7 C 1.37876 * 120.00368 * 64.73652 * 5 3 2 8 8 N 1.31514 * 120.00360 * 187.26421 * 7 5 3 9 9 Si 1.86805 * 119.99758 * 7.25944 * 7 5 3 10 10 H 1.48507 * 109.47037 * 270.00400 * 9 7 5 11 11 H 1.48501 * 109.46943 * 29.99952 * 9 7 5 12 12 H 1.48493 * 109.47092 * 150.00332 * 9 7 5 13 13 N 1.46502 * 109.47201 * 65.40509 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00452 * 13 3 2 15 15 O 1.21551 * 120.00050 * 359.97438 * 14 13 3 16 16 C 1.47860 * 119.99877 * 179.97438 * 14 13 3 17 17 C 1.39704 * 120.07237 * 0.02562 * 16 14 13 18 18 C 1.38057 * 120.14506 * 179.97438 * 17 16 14 19 19 C 1.38099 * 120.29969 * 359.97438 * 18 17 16 20 20 C 1.39667 * 120.14143 * 0.02562 * 19 18 17 21 21 C 1.47860 * 120.07367 * 180.02562 * 20 19 18 22 22 O 1.21554 * 119.99843 * 179.97438 * 21 20 19 23 23 N 1.34774 * 119.99877 * 0.02562 * 21 20 19 24 24 C 1.46496 * 119.99613 * 180.02562 * 23 21 20 25 25 C 1.39298 * 120.07722 * 179.72141 * 16 14 13 26 26 H 1.08995 * 109.47307 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47493 * 300.00477 * 1 2 3 28 28 H 1.09005 * 109.47229 * 60.00026 * 1 2 3 29 29 H 1.08999 * 109.47493 * 239.99523 * 2 1 3 30 30 H 1.09005 * 109.47229 * 119.99974 * 2 1 3 31 31 H 0.96997 * 119.99401 * 354.93876 * 8 7 5 32 32 H 0.96998 * 120.00194 * 94.99918 * 13 3 2 33 33 H 1.08001 * 119.93087 * 359.94966 * 17 16 14 34 34 H 1.08001 * 119.85332 * 179.97438 * 18 17 16 35 35 H 1.08001 * 119.93383 * 180.02562 * 19 18 17 36 36 H 0.96996 * 120.00243 * 359.97438 * 23 21 20 37 37 H 1.09000 * 109.46884 * 179.97438 * 24 23 21 38 38 H 1.09004 * 109.47488 * 299.99382 * 24 23 21 39 39 H 1.08995 * 109.47619 * 59.99689 * 24 23 21 40 40 H 1.08002 * 120.14260 * 0.02562 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4445 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1311 0.9701 -1.2861 8 7 5.4381 0.8380 -1.3493 9 14 3.0741 0.5148 -2.7575 10 1 2.6850 -0.9154 -2.6639 11 1 1.8532 1.3600 -2.7704 12 1 3.8437 0.7376 -4.0077 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3380 2.6316 0.4507 16 6 0.0614 3.3188 2.6482 17 6 0.9596 3.3542 3.7176 18 6 0.6038 3.9683 4.9018 19 6 -0.6404 4.5517 5.0377 20 6 -1.5480 4.5235 3.9764 21 6 -2.8796 5.1492 4.1234 22 8 -3.6681 5.1243 3.1987 23 7 -3.2185 5.7481 5.2822 24 6 -4.5381 6.3675 5.4279 25 6 -1.1933 3.9100 2.7768 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.9924 1.1426 -0.6139 32 1 2.2853 2.1184 1.9978 33 1 1.9343 2.8998 3.6180 34 1 1.3017 3.9925 5.7257 35 1 -0.9124 5.0309 5.9666 36 1 -2.5891 5.7683 6.0199 37 1 -4.6296 6.7971 6.4255 38 1 -4.6552 7.1532 4.6815 39 1 -5.3115 5.6128 5.2854 40 1 -1.8897 3.8894 1.9515 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183906220.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:22 Heat of formation + Delta-G solvation = -51.274533 kcal Electronic energy + Delta-G solvation = -22612.070076 eV Core-core repulsion = 19198.576253 eV Total energy + Delta-G solvation = -3413.493824 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.51178 -39.44839 -37.90050 -35.33536 -34.96218 -32.72923 -32.02214 -31.22135 -30.80899 -27.52245 -26.99290 -24.19321 -23.22397 -22.25173 -21.31645 -20.41129 -19.61004 -18.80694 -17.54442 -16.57684 -16.26874 -16.08967 -15.57310 -15.48908 -14.94873 -14.46506 -14.33826 -13.89499 -13.78277 -13.39041 -13.25230 -12.75595 -12.69308 -12.59315 -12.40947 -12.18327 -12.09374 -11.76789 -11.44862 -10.94226 -10.71329 -10.47771 -10.24305 -9.82324 -9.72682 -9.52574 -9.33469 -9.17014 -9.13462 -8.91418 -8.53901 -8.13492 -6.58156 -4.26228 0.51985 0.98223 2.51309 2.85345 3.28302 3.35894 3.45860 3.59513 3.82288 3.97276 4.37321 4.39823 4.54269 4.67507 4.84188 5.00691 5.11905 5.16628 5.17717 5.26245 5.44086 5.50742 5.72584 6.00102 6.02165 6.05270 6.06558 6.09606 6.19786 6.24251 6.57986 6.68586 6.75052 6.88100 7.00720 7.12795 7.31445 7.32462 7.59939 7.92616 8.19513 8.39164 8.65672 8.89838 9.44213 10.82561 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030158 B = 0.003517 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.231700 B = 7959.192370 C = 8485.323600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.241 3.759 4 H 0.051 0.949 5 C -0.610 4.610 6 H 0.062 0.938 7 C 0.037 3.963 8 N -0.904 5.904 9 Si 1.048 2.952 10 H -0.280 1.280 11 H -0.272 1.272 12 H -0.287 1.287 13 N -0.693 5.693 14 C 0.541 3.459 15 O -0.539 6.539 16 C -0.128 4.128 17 C -0.061 4.061 18 C -0.133 4.133 19 C -0.072 4.072 20 C -0.149 4.149 21 C 0.560 3.440 22 O -0.529 6.529 23 N -0.735 5.735 24 C 0.088 3.912 25 C -0.004 4.004 26 H 0.032 0.968 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.268 0.732 32 H 0.391 0.609 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.127 0.873 36 H 0.401 0.599 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.649 8.191 17.944 23.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C 0.137 3.863 4 H 0.069 0.931 5 C -0.648 4.648 6 H 0.080 0.920 7 C -0.169 4.169 8 N -0.537 5.537 9 Si 0.876 3.124 10 H -0.206 1.206 11 H -0.198 1.198 12 H -0.214 1.214 13 N -0.341 5.341 14 C 0.327 3.673 15 O -0.419 6.419 16 C -0.131 4.131 17 C -0.080 4.080 18 C -0.151 4.151 19 C -0.091 4.091 20 C -0.152 4.152 21 C 0.347 3.653 22 O -0.406 6.406 23 N -0.387 5.387 24 C -0.056 4.056 25 C -0.024 4.024 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.225 0.775 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.145 0.855 36 H 0.236 0.764 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.701 7.508 15.048 21.692 hybrid contribution 0.728 0.665 2.510 2.697 sum -12.973 8.173 17.559 23.311 Atomic orbital electron populations 1.21906 0.97079 0.99109 1.02253 1.22253 0.94078 0.99763 1.01441 1.19302 0.95996 0.88610 0.82352 0.93137 1.22146 0.89597 1.48272 1.04831 0.92004 1.25697 0.97482 0.93527 1.00210 1.70842 1.04415 1.42430 1.36037 0.83959 0.75381 0.77250 0.75796 1.20646 1.19771 1.21367 1.46198 1.14235 1.55494 1.18203 1.18131 0.83002 0.79385 0.86802 1.90763 1.51045 1.59813 1.40237 1.20288 0.95286 1.02002 0.95526 1.21664 0.98943 0.95241 0.92179 1.21031 0.96646 0.99384 0.98053 1.21372 0.93415 0.96981 0.97328 1.19798 0.94762 1.04721 0.95960 1.18290 0.86751 0.77896 0.82323 1.90810 1.51907 1.58526 1.39353 1.45688 1.18260 1.58852 1.15936 1.21555 0.83973 0.98181 1.01893 1.21409 0.94855 0.89815 0.96322 0.94863 0.93148 0.92776 0.92113 0.92691 0.92147 0.77460 0.84759 0.84749 0.85546 0.76439 0.90558 0.92012 0.92034 0.83279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 8.52 37.15 0.32 -2.66 16 2 C -0.14 -3.03 5.20 -26.74 -0.14 -3.17 16 3 C 0.24 5.71 1.81 -69.08 -0.13 5.58 16 4 H 0.05 1.33 6.07 -51.93 -0.32 1.01 16 5 C -0.61 -16.29 9.09 -34.44 -0.31 -16.60 16 6 H 0.06 1.71 7.95 -52.48 -0.42 1.29 16 7 C 0.04 1.03 5.42 -17.82 -0.10 0.93 16 8 N -0.90 -26.85 13.70 55.43 0.76 -26.09 16 9 Si 1.05 25.42 25.39 -169.99 -4.32 21.10 16 10 H -0.28 -6.43 6.73 56.52 0.38 -6.05 16 11 H -0.27 -6.43 6.38 56.52 0.36 -6.07 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 N -0.69 -13.82 4.98 -55.87 -0.28 -14.10 16 14 C 0.54 10.52 6.36 -12.32 -0.08 10.44 16 15 O -0.54 -12.21 13.48 5.32 0.07 -12.14 16 16 C -0.13 -1.96 5.87 -105.02 -0.62 -2.58 16 17 C -0.06 -0.73 9.54 -39.10 -0.37 -1.10 16 18 C -0.13 -1.20 10.02 -39.70 -0.40 -1.60 16 19 C -0.07 -0.63 9.54 -39.10 -0.37 -1.00 16 20 C -0.15 -1.81 5.87 -105.02 -0.62 -2.43 16 21 C 0.56 6.99 7.77 -12.32 -0.10 6.89 16 22 O -0.53 -8.81 16.34 5.32 0.09 -8.72 16 23 N -0.73 -5.91 5.66 -68.04 -0.39 -6.29 16 24 C 0.09 0.58 10.70 59.84 0.64 1.22 16 25 C 0.00 -0.06 9.14 -38.78 -0.35 -0.42 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 1.02 5.64 -51.93 -0.29 0.73 16 28 H 0.05 1.15 7.87 -51.93 -0.41 0.74 16 29 H 0.06 1.39 4.43 -51.93 -0.23 1.16 16 30 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.27 7.86 8.72 -40.82 -0.36 7.50 16 32 H 0.39 6.79 6.55 -40.82 -0.27 6.52 16 33 H 0.13 1.42 6.39 -52.49 -0.34 1.08 16 34 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.13 0.60 6.39 -52.49 -0.34 0.27 16 36 H 0.40 1.90 6.85 -40.82 -0.28 1.62 16 37 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.15 2.56 7.23 -52.49 -0.38 2.18 16 LS Contribution 327.46 15.07 4.93 4.93 Total: -1.00 -34.38 327.46 -6.76 -41.14 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.01 Total: 6.66 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -2.62 Total: -6.49 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.10 Total: -46.49 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: 0.16 Total: -20.86 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -4.32 Total: 21.10 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.38 -6.76 -41.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183906220.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.130 kcal (2) G-P(sol) polarization free energy of solvation -34.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds