Wall clock time and date at job start Tue Mar 31 2020 06:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47523 * 2 1 4 4 H 1.09002 * 109.46870 * 305.40624 * 3 2 1 5 5 C 1.50697 * 109.47458 * 185.40687 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73730 * 5 3 2 7 7 C 1.37876 * 120.00368 * 64.73652 * 5 3 2 8 8 N 1.31514 * 120.00360 * 187.26421 * 7 5 3 9 9 Si 1.86805 * 119.99758 * 7.25944 * 7 5 3 10 10 H 1.48507 * 109.47037 * 270.00400 * 9 7 5 11 11 H 1.48501 * 109.46943 * 29.99952 * 9 7 5 12 12 H 1.48493 * 109.47092 * 150.00332 * 9 7 5 13 13 N 1.46502 * 109.47201 * 65.40509 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00452 * 13 3 2 15 15 O 1.21551 * 120.00050 * 359.97438 * 14 13 3 16 16 C 1.47860 * 119.99877 * 179.97438 * 14 13 3 17 17 C 1.39704 * 120.07237 * 0.02562 * 16 14 13 18 18 C 1.38057 * 120.14506 * 179.97438 * 17 16 14 19 19 C 1.38099 * 120.29969 * 359.97438 * 18 17 16 20 20 C 1.39667 * 120.14143 * 0.02562 * 19 18 17 21 21 C 1.47860 * 120.07367 * 180.02562 * 20 19 18 22 22 O 1.21554 * 119.99843 * 179.97438 * 21 20 19 23 23 N 1.34774 * 119.99877 * 0.02562 * 21 20 19 24 24 C 1.46496 * 119.99613 * 180.02562 * 23 21 20 25 25 C 1.39298 * 120.07722 * 179.72141 * 16 14 13 26 26 H 1.08995 * 109.47307 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47493 * 300.00477 * 1 2 3 28 28 H 1.09005 * 109.47229 * 60.00026 * 1 2 3 29 29 H 1.08999 * 109.47493 * 239.99523 * 2 1 3 30 30 H 1.09005 * 109.47229 * 119.99974 * 2 1 3 31 31 H 0.96997 * 119.99401 * 354.93876 * 8 7 5 32 32 H 0.96998 * 120.00194 * 94.99918 * 13 3 2 33 33 H 1.08001 * 119.93087 * 359.94966 * 17 16 14 34 34 H 1.08001 * 119.85332 * 179.97438 * 18 17 16 35 35 H 1.08001 * 119.93383 * 180.02562 * 19 18 17 36 36 H 0.96996 * 120.00243 * 359.97438 * 23 21 20 37 37 H 1.09000 * 109.46884 * 179.97438 * 24 23 21 38 38 H 1.09004 * 109.47488 * 299.99382 * 24 23 21 39 39 H 1.08995 * 109.47619 * 59.99689 * 24 23 21 40 40 H 1.08002 * 120.14260 * 0.02562 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4445 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1311 0.9701 -1.2861 8 7 5.4381 0.8380 -1.3493 9 14 3.0741 0.5148 -2.7575 10 1 2.6850 -0.9154 -2.6639 11 1 1.8532 1.3600 -2.7704 12 1 3.8437 0.7376 -4.0077 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3380 2.6316 0.4507 16 6 0.0614 3.3188 2.6482 17 6 0.9596 3.3542 3.7176 18 6 0.6038 3.9683 4.9018 19 6 -0.6404 4.5517 5.0377 20 6 -1.5480 4.5235 3.9764 21 6 -2.8796 5.1492 4.1234 22 8 -3.6681 5.1243 3.1987 23 7 -3.2185 5.7481 5.2822 24 6 -4.5381 6.3675 5.4279 25 6 -1.1933 3.9100 2.7768 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.9924 1.1426 -0.6139 32 1 2.2853 2.1184 1.9978 33 1 1.9343 2.8998 3.6180 34 1 1.3017 3.9925 5.7257 35 1 -0.9124 5.0309 5.9666 36 1 -2.5891 5.7683 6.0199 37 1 -4.6296 6.7971 6.4255 38 1 -4.6552 7.1532 4.6815 39 1 -5.3115 5.6128 5.2854 40 1 -1.8897 3.8894 1.9515 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183906220.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:21 Heat of formation + Delta-G solvation = -77.841553 kcal Electronic energy + Delta-G solvation = -22613.222109 eV Core-core repulsion = 19198.576253 eV Total energy + Delta-G solvation = -3414.645856 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.58938 -40.75492 -39.02311 -37.12305 -35.81689 -34.57410 -33.65661 -32.22950 -32.02729 -29.22631 -27.89263 -25.33433 -24.46760 -23.90322 -22.42893 -21.80524 -21.15868 -20.19108 -19.21242 -17.70792 -17.47917 -17.17293 -16.90024 -16.49909 -16.31094 -15.84318 -15.46915 -15.22253 -14.81067 -14.78591 -14.57009 -14.38315 -14.24060 -14.00906 -13.76335 -13.30170 -13.20241 -12.93370 -12.75120 -12.55356 -12.42979 -12.31961 -11.74218 -11.53908 -11.25492 -11.01669 -10.87381 -10.67472 -10.38553 -10.15088 -10.02222 -9.83323 -8.79853 -6.48302 -0.41368 -0.02936 1.39714 1.49619 1.53385 1.67317 2.06449 2.07402 2.36717 2.39841 2.84367 3.01480 3.58842 3.65417 3.80649 4.02447 4.07906 4.25420 4.32228 4.33786 4.40552 4.48712 4.60305 4.61222 4.82461 4.86546 4.95064 5.02676 5.10776 5.13776 5.19816 5.23171 5.27245 5.32180 5.50088 5.56785 5.61381 5.72039 5.98831 6.44629 6.49901 6.75826 7.11974 7.24066 7.35563 8.60247 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030158 B = 0.003517 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.231700 B = 7959.192370 C = 8485.323600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.134 4.134 3 C 0.245 3.755 4 H 0.023 0.977 5 C -0.603 4.603 6 H 0.046 0.954 7 C -0.006 4.006 8 N -0.933 5.933 9 Si 1.076 2.924 10 H -0.256 1.256 11 H -0.270 1.270 12 H -0.286 1.286 13 N -0.693 5.693 14 C 0.540 3.460 15 O -0.581 6.581 16 C -0.152 4.152 17 C -0.059 4.059 18 C -0.117 4.117 19 C -0.043 4.043 20 C -0.157 4.157 21 C 0.553 3.447 22 O -0.585 6.585 23 N -0.711 5.711 24 C 0.082 3.918 25 C -0.026 4.026 26 H 0.061 0.939 27 H 0.045 0.955 28 H 0.037 0.963 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.259 0.741 32 H 0.404 0.596 33 H 0.146 0.854 34 H 0.182 0.818 35 H 0.180 0.820 36 H 0.421 0.579 37 H 0.120 0.880 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.072 8.744 21.801 26.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.172 4.172 3 C 0.140 3.860 4 H 0.041 0.959 5 C -0.641 4.641 6 H 0.064 0.936 7 C -0.207 4.207 8 N -0.569 5.569 9 Si 0.900 3.100 10 H -0.181 1.181 11 H -0.195 1.195 12 H -0.212 1.212 13 N -0.342 5.342 14 C 0.328 3.672 15 O -0.463 6.463 16 C -0.155 4.155 17 C -0.078 4.078 18 C -0.134 4.134 19 C -0.062 4.062 20 C -0.160 4.160 21 C 0.341 3.659 22 O -0.466 6.466 23 N -0.364 5.364 24 C -0.061 4.061 25 C -0.047 4.047 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.240 0.760 33 H 0.164 0.836 34 H 0.199 0.801 35 H 0.197 0.803 36 H 0.259 0.741 37 H 0.139 0.861 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.108 8.077 19.002 25.007 hybrid contribution 0.832 0.622 1.498 1.823 sum -13.275 8.700 20.500 25.926 Atomic orbital electron populations 1.21785 0.95665 1.00585 1.01312 1.22155 0.95259 0.98251 1.01558 1.18972 0.93829 0.89814 0.83357 0.95932 1.22325 0.91168 1.46671 1.03981 0.93592 1.26732 0.97687 0.93651 1.02583 1.70932 1.05263 1.44619 1.36066 0.83585 0.74335 0.78561 0.73569 1.18096 1.19533 1.21234 1.45971 1.15052 1.55749 1.17385 1.18748 0.81998 0.78483 0.87952 1.90729 1.52088 1.61281 1.42202 1.19891 0.96544 1.04277 0.94832 1.21884 0.98574 0.95199 0.92162 1.21550 0.97238 0.96901 0.97730 1.21927 0.92021 0.94594 0.97626 1.19851 0.95549 1.04684 0.95891 1.18482 0.86484 0.77990 0.82895 1.90787 1.53428 1.60880 1.41534 1.45562 1.19131 1.56833 1.14883 1.21754 0.82783 0.97514 1.04085 1.21182 0.94499 0.91962 0.97027 0.92017 0.93555 0.94369 0.92786 0.91688 0.93131 0.75965 0.83612 0.80054 0.80275 0.74060 0.86121 0.93212 0.93143 0.87095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.52 8.52 71.98 0.61 -4.90 16 2 C -0.13 -5.87 5.20 30.59 0.16 -5.71 16 3 C 0.24 11.81 1.81 44.24 0.08 11.89 16 4 H 0.02 1.23 6.07 -2.39 -0.01 1.22 16 5 C -0.60 -32.73 9.09 25.60 0.23 -32.50 16 6 H 0.05 2.59 7.95 -2.91 -0.02 2.56 16 7 C -0.01 -0.36 5.42 84.65 0.46 0.10 16 8 N -0.93 -56.39 13.70 21.45 0.29 -56.10 16 9 Si 1.08 51.67 25.39 68.60 1.74 53.41 16 10 H -0.26 -11.25 6.73 99.48 0.67 -10.58 16 11 H -0.27 -12.78 6.38 99.48 0.63 -12.15 16 12 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 13 N -0.69 -27.99 4.98 -448.96 -2.23 -30.23 16 14 C 0.54 21.70 6.36 86.79 0.55 22.25 16 15 O -0.58 -27.82 13.48 -3.88 -0.05 -27.87 16 16 C -0.15 -4.70 5.87 -20.12 -0.12 -4.82 16 17 C -0.06 -1.25 9.54 22.58 0.22 -1.04 16 18 C -0.12 -1.49 10.02 22.19 0.22 -1.26 16 19 C -0.04 -0.54 9.54 22.58 0.22 -0.32 16 20 C -0.16 -3.55 5.87 -20.12 -0.12 -3.67 16 21 C 0.55 13.30 7.77 86.79 0.67 13.98 16 22 O -0.59 -20.31 16.34 -3.88 -0.06 -20.37 16 23 N -0.71 -9.22 5.66 -487.47 -2.76 -11.98 16 24 C 0.08 0.88 10.70 127.77 1.37 2.24 16 25 C -0.03 -0.83 9.14 22.79 0.21 -0.62 16 26 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.05 1.90 5.64 -2.39 -0.01 1.88 16 28 H 0.04 1.64 7.87 -2.38 -0.02 1.62 16 29 H 0.05 2.44 4.43 -2.39 -0.01 2.43 16 30 H 0.06 2.69 8.14 -2.38 -0.02 2.67 16 31 H 0.26 15.59 8.72 -92.71 -0.81 14.78 16 32 H 0.40 13.93 6.55 -92.71 -0.61 13.32 16 33 H 0.15 2.69 6.39 -2.91 -0.02 2.67 16 34 H 0.18 0.78 8.06 -2.91 -0.02 0.75 16 35 H 0.18 0.33 6.39 -2.91 -0.02 0.31 16 36 H 0.42 1.77 6.85 -92.71 -0.64 1.13 16 37 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 39 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.11 4.26 7.23 -2.91 -0.02 4.24 16 Total: -1.00 -81.32 327.46 1.39 -79.93 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -0.30 Total: 17.60 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 4.76 Total: -4.39 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -4.70 Total: -98.30 kcal Atomic # 8 Polarization: -48.13 SS G_CDS: -0.12 Total: -48.25 kcal Atomic # 14 Polarization: 51.67 SS G_CDS: 1.74 Total: 53.41 kcal Total: -81.32 1.39 -79.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183906220.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.088 kcal (2) G-P(sol) polarization free energy of solvation -81.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds