Wall clock time and date at job start Tue Mar 31 2020 06:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47144 * 2 1 4 4 H 1.09000 * 109.47050 * 177.76025 * 3 2 1 5 5 C 1.50708 * 109.46989 * 297.75711 * 3 2 1 6 6 H 1.07996 * 119.99649 * 120.00258 * 5 3 2 7 7 C 1.37878 * 120.00048 * 300.00217 * 5 3 2 8 8 N 1.31514 * 119.99991 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99839 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46781 * 90.00406 * 9 7 5 11 11 H 1.48493 * 109.47280 * 210.00030 * 9 7 5 12 12 H 1.48495 * 109.47336 * 330.00582 * 9 7 5 13 13 N 1.46898 * 109.47466 * 57.75776 * 3 2 1 14 14 C 1.46898 * 110.99729 * 86.39879 * 13 3 2 15 15 C 1.50704 * 109.47002 * 175.49906 * 14 13 3 16 16 C 1.32561 * 120.00027 * 124.99882 * 15 14 13 17 17 C 1.47819 * 119.99917 * 179.97438 * 16 15 14 18 18 C 1.39553 * 120.13705 * 17.14790 * 17 16 15 19 19 C 1.37951 * 119.85385 * 179.97438 * 18 17 16 20 20 C 1.38373 * 120.14242 * 0.02562 * 19 18 17 21 21 C 1.38330 * 120.28387 * 359.97438 * 20 19 18 22 22 C 1.37992 * 120.14047 * 359.74774 * 21 20 19 23 23 N 1.48005 * 120.07089 * 180.27665 * 22 21 20 24 24 O 1.21799 * 120.00174 * 6.95819 * 23 22 21 25 25 O 1.21799 * 119.99939 * 186.96309 * 23 22 21 26 26 H 1.08993 * 109.47096 * 55.46842 * 1 2 3 27 27 H 1.09004 * 109.47011 * 295.47119 * 1 2 3 28 28 H 1.08999 * 109.47357 * 175.47084 * 1 2 3 29 29 H 1.09001 * 109.47003 * 119.99765 * 2 1 3 30 30 H 1.08999 * 109.46739 * 239.99494 * 2 1 3 31 31 H 0.96998 * 119.99617 * 179.97438 * 8 7 5 32 32 H 1.00901 * 111.00011 * 210.34972 * 13 3 2 33 33 H 1.09001 * 109.47177 * 295.49319 * 14 13 3 34 34 H 1.08999 * 109.47375 * 55.49667 * 14 13 3 35 35 H 1.08000 * 119.99922 * 304.99252 * 15 14 13 36 36 H 1.07999 * 120.00047 * 359.97438 * 16 15 14 37 37 H 1.07995 * 120.07356 * 359.95423 * 18 17 16 38 38 H 1.08004 * 119.93510 * 179.97438 * 19 18 17 39 39 H 1.07995 * 119.85812 * 179.97438 * 20 19 18 40 40 H 1.08004 * 119.92402 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1293 1.4427 0.0402 5 6 1.5836 2.1367 -1.2574 6 1 0.9597 3.0158 -1.1927 7 6 1.9625 1.6494 -2.4903 8 7 2.7218 0.5785 -2.5690 9 14 1.3961 2.5094 -4.0488 10 1 2.3884 3.5462 -4.4304 11 1 1.2718 1.5158 -5.1453 12 1 0.0780 3.1500 -3.8095 13 7 1.5067 2.1505 1.1714 14 6 2.3655 1.9468 2.3456 15 6 1.8497 2.7742 3.4948 16 6 1.5676 2.1959 4.6538 17 6 1.0622 3.0075 5.7811 18 6 0.5444 4.2826 5.5497 19 6 0.0738 5.0348 6.6060 20 6 0.1149 4.5277 7.8928 21 6 0.6270 3.2646 8.1288 22 6 1.0956 2.4998 7.0801 23 7 1.6375 1.1461 7.3337 24 8 1.5550 0.6554 8.4454 25 8 2.1661 0.5227 6.4306 26 1 -0.3633 0.5825 -0.8465 27 1 -0.3633 0.4420 0.9278 28 1 -0.3634 -1.0244 -0.0811 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 2.9880 0.2355 -3.4364 32 1 1.3876 3.1333 0.9766 33 1 2.3566 0.8930 2.6239 34 1 3.3847 2.2511 2.1075 35 1 1.7099 3.8383 3.3741 36 1 1.7071 1.1318 4.7744 37 1 0.5124 4.6797 4.5459 38 1 -0.3269 6.0219 6.4284 39 1 -0.2543 5.1207 8.7164 40 1 0.6559 2.8744 9.1355 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184089616.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:51 Heat of formation + Delta-G solvation = 38.841812 kcal Electronic energy + Delta-G solvation = -22193.447435 eV Core-core repulsion = 18783.861350 eV Total energy + Delta-G solvation = -3409.586086 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.24941 -39.65905 -36.89927 -36.54515 -34.73826 -32.60819 -32.20358 -31.02652 -29.63371 -26.99520 -26.20242 -24.53179 -23.24428 -23.00687 -22.17474 -19.77366 -19.16011 -18.99238 -18.59853 -17.57254 -16.80286 -16.45504 -15.57914 -15.12913 -14.80973 -14.62446 -14.22495 -13.75548 -13.40815 -13.38053 -13.01737 -12.75593 -12.33415 -12.04094 -11.90317 -11.49619 -11.46465 -11.22541 -11.17903 -10.95731 -10.80969 -10.69863 -10.39752 -10.36763 -10.06516 -9.88217 -9.73948 -9.38653 -8.81486 -8.60440 -8.44121 -7.29892 -6.04788 -4.11232 -0.34748 0.48563 1.22231 1.35441 2.26208 3.21374 3.26378 3.34042 3.36728 4.07808 4.13093 4.37015 4.38286 4.58492 4.66259 4.88786 5.06171 5.25734 5.29740 5.39364 5.53246 5.57374 5.70885 5.79738 5.90213 5.98861 6.21009 6.42696 6.54993 6.63998 6.68362 6.79267 6.85883 7.24285 7.27155 7.46594 7.64031 7.71588 7.75122 7.82436 8.23208 8.33459 8.60095 8.97353 9.53795 11.00846 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024991 B = 0.003109 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.122270 B = 9002.937370 C = 9753.451642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.104 4.104 3 C 0.215 3.785 4 H 0.002 0.998 5 C -0.515 4.515 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.679 5.679 14 C 0.077 3.923 15 C -0.072 4.072 16 C -0.181 4.181 17 C 0.039 3.961 18 C -0.126 4.126 19 C -0.062 4.062 20 C -0.135 4.135 21 C -0.052 4.052 22 C -0.053 4.053 23 N 0.035 4.965 24 O -0.174 6.174 25 O -0.152 6.152 26 H 0.054 0.946 27 H 0.041 0.959 28 H 0.014 0.986 29 H 0.011 0.989 30 H 0.088 0.912 31 H 0.261 0.739 32 H 0.329 0.671 33 H 0.077 0.923 34 H 0.039 0.961 35 H 0.109 0.891 36 H 0.159 0.841 37 H 0.149 0.851 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.191 8.895 19.027 21.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.143 4.143 3 C 0.108 3.892 4 H 0.020 0.980 5 C -0.554 4.554 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.310 5.310 14 C -0.052 4.052 15 C -0.091 4.091 16 C -0.199 4.199 17 C 0.038 3.962 18 C -0.145 4.145 19 C -0.080 4.080 20 C -0.153 4.153 21 C -0.071 4.071 22 C -0.136 4.136 23 N 0.551 4.449 24 O -0.386 6.386 25 O -0.367 6.367 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.033 0.967 29 H 0.030 0.970 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.146 0.854 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.127 0.873 36 H 0.176 0.824 37 H 0.167 0.833 38 H 0.160 0.840 39 H 0.161 0.839 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.787 8.878 18.936 21.455 hybrid contribution 0.611 0.673 -0.993 1.347 sum -4.175 9.551 17.943 20.751 Atomic orbital electron populations 1.21443 0.97553 0.97482 1.01224 1.21450 0.94959 0.98173 0.99719 1.19184 0.92716 0.91454 0.85851 0.97998 1.21179 1.31752 1.12052 0.90373 0.92310 1.24892 0.95005 0.94973 0.98991 1.69880 1.35832 1.22236 1.24623 0.86569 0.79070 0.79253 0.82943 1.20819 1.21201 1.19873 1.60862 1.49104 1.15916 1.05162 1.21159 0.94727 0.99167 0.90133 1.23711 0.92291 0.99528 0.93533 1.22407 1.04277 1.01622 0.91636 1.19116 0.92463 0.93506 0.91146 1.21495 0.99452 0.92569 1.00935 1.21557 0.94280 0.99893 0.92296 1.21187 1.01335 0.94862 0.97936 1.20974 0.93672 0.93578 0.98881 1.21158 1.11194 0.85203 0.96053 1.43559 0.98520 1.02573 1.00225 1.94510 1.62536 1.71436 1.10143 1.94453 1.43215 1.62044 1.36979 0.92646 0.93967 0.96710 0.97014 0.89369 0.92878 0.85366 0.90446 0.94295 0.87328 0.82355 0.83327 0.84046 0.83858 0.83192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 9.52 37.16 0.35 -2.32 16 2 C -0.10 -2.52 5.61 -26.73 -0.15 -2.67 16 3 C 0.22 5.21 2.30 -68.86 -0.16 5.05 16 4 H 0.00 0.06 7.71 -51.93 -0.40 -0.34 16 5 C -0.51 -13.45 7.36 -34.44 -0.25 -13.70 16 6 H 0.06 1.51 7.60 -52.49 -0.40 1.11 16 7 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 8 N -0.89 -24.78 11.30 55.43 0.63 -24.15 16 9 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 13 N -0.68 -13.54 5.55 -109.22 -0.61 -14.15 16 14 C 0.08 1.31 5.99 -4.97 -0.03 1.28 16 15 C -0.07 -0.99 9.09 -36.21 -0.33 -1.32 16 16 C -0.18 -2.48 8.57 -37.57 -0.32 -2.80 16 17 C 0.04 0.47 5.83 -105.01 -0.61 -0.15 16 18 C -0.13 -1.14 9.33 -39.20 -0.37 -1.51 16 19 C -0.06 -0.41 10.03 -39.64 -0.40 -0.81 16 20 C -0.13 -0.88 10.04 -39.50 -0.40 -1.28 16 21 C -0.05 -0.46 9.55 -39.64 -0.38 -0.84 16 22 C -0.05 -0.64 6.86 -79.57 -0.55 -1.18 16 23 N 0.04 0.51 4.45 34.15 0.15 0.66 16 24 O -0.17 -2.53 18.47 -29.46 -0.54 -3.07 16 25 O -0.15 -2.40 15.33 -29.46 -0.45 -2.85 16 26 H 0.05 1.32 7.14 -51.93 -0.37 0.95 16 27 H 0.04 0.90 7.70 -51.93 -0.40 0.50 16 28 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.01 0.26 7.69 -51.93 -0.40 -0.14 16 30 H 0.09 2.37 6.01 -51.93 -0.31 2.06 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.33 6.27 8.12 -39.29 -0.32 5.95 16 33 H 0.08 1.39 7.36 -51.93 -0.38 1.00 16 34 H 0.04 0.68 7.94 -51.93 -0.41 0.27 16 35 H 0.11 1.24 6.36 -52.49 -0.33 0.91 16 36 H 0.16 2.41 5.04 -52.49 -0.26 2.14 16 37 H 0.15 1.16 6.51 -52.49 -0.34 0.82 16 38 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 39 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 40 H 0.15 1.11 7.62 -52.48 -0.40 0.71 16 LS Contribution 336.73 15.07 5.07 5.07 Total: -1.00 -29.43 336.73 -9.59 -39.02 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.14 Total: 4.40 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -3.68 Total: -20.65 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.17 Total: -37.64 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -1.00 Total: -5.92 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.43 -9.59 -39.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184089616.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.863 kcal (2) G-P(sol) polarization free energy of solvation -29.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds