Wall clock time and date at job start Tue Mar 31 2020 06:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47144 * 2 1 4 4 H 1.09000 * 109.47050 * 177.76025 * 3 2 1 5 5 C 1.50708 * 109.46989 * 297.75711 * 3 2 1 6 6 H 1.07996 * 119.99649 * 120.00258 * 5 3 2 7 7 C 1.37878 * 120.00048 * 300.00217 * 5 3 2 8 8 N 1.31514 * 119.99991 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99839 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46781 * 90.00406 * 9 7 5 11 11 H 1.48493 * 109.47280 * 210.00030 * 9 7 5 12 12 H 1.48495 * 109.47336 * 330.00582 * 9 7 5 13 13 N 1.46898 * 109.47466 * 57.75776 * 3 2 1 14 14 C 1.46898 * 110.99729 * 86.39879 * 13 3 2 15 15 C 1.50704 * 109.47002 * 175.49906 * 14 13 3 16 16 C 1.32561 * 120.00027 * 124.99882 * 15 14 13 17 17 C 1.47819 * 119.99917 * 179.97438 * 16 15 14 18 18 C 1.39553 * 120.13705 * 17.14790 * 17 16 15 19 19 C 1.37951 * 119.85385 * 179.97438 * 18 17 16 20 20 C 1.38373 * 120.14242 * 0.02562 * 19 18 17 21 21 C 1.38330 * 120.28387 * 359.97438 * 20 19 18 22 22 C 1.37992 * 120.14047 * 359.74774 * 21 20 19 23 23 N 1.48005 * 120.07089 * 180.27665 * 22 21 20 24 24 O 1.21799 * 120.00174 * 6.95819 * 23 22 21 25 25 O 1.21799 * 119.99939 * 186.96309 * 23 22 21 26 26 H 1.08993 * 109.47096 * 55.46842 * 1 2 3 27 27 H 1.09004 * 109.47011 * 295.47119 * 1 2 3 28 28 H 1.08999 * 109.47357 * 175.47084 * 1 2 3 29 29 H 1.09001 * 109.47003 * 119.99765 * 2 1 3 30 30 H 1.08999 * 109.46739 * 239.99494 * 2 1 3 31 31 H 0.96998 * 119.99617 * 179.97438 * 8 7 5 32 32 H 1.00901 * 111.00011 * 210.34972 * 13 3 2 33 33 H 1.09001 * 109.47177 * 295.49319 * 14 13 3 34 34 H 1.08999 * 109.47375 * 55.49667 * 14 13 3 35 35 H 1.08000 * 119.99922 * 304.99252 * 15 14 13 36 36 H 1.07999 * 120.00047 * 359.97438 * 16 15 14 37 37 H 1.07995 * 120.07356 * 359.95423 * 18 17 16 38 38 H 1.08004 * 119.93510 * 179.97438 * 19 18 17 39 39 H 1.07995 * 119.85812 * 179.97438 * 20 19 18 40 40 H 1.08004 * 119.92402 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1293 1.4427 0.0402 5 6 1.5836 2.1367 -1.2574 6 1 0.9597 3.0158 -1.1927 7 6 1.9625 1.6494 -2.4903 8 7 2.7218 0.5785 -2.5690 9 14 1.3961 2.5094 -4.0488 10 1 2.3884 3.5462 -4.4304 11 1 1.2718 1.5158 -5.1453 12 1 0.0780 3.1500 -3.8095 13 7 1.5067 2.1505 1.1714 14 6 2.3655 1.9468 2.3456 15 6 1.8497 2.7742 3.4948 16 6 1.5676 2.1959 4.6538 17 6 1.0622 3.0075 5.7811 18 6 0.5444 4.2826 5.5497 19 6 0.0738 5.0348 6.6060 20 6 0.1149 4.5277 7.8928 21 6 0.6270 3.2646 8.1288 22 6 1.0956 2.4998 7.0801 23 7 1.6375 1.1461 7.3337 24 8 1.5550 0.6554 8.4454 25 8 2.1661 0.5227 6.4306 26 1 -0.3633 0.5825 -0.8465 27 1 -0.3633 0.4420 0.9278 28 1 -0.3634 -1.0244 -0.0811 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 2.9880 0.2355 -3.4364 32 1 1.3876 3.1333 0.9766 33 1 2.3566 0.8930 2.6239 34 1 3.3847 2.2511 2.1075 35 1 1.7099 3.8383 3.3741 36 1 1.7071 1.1318 4.7744 37 1 0.5124 4.6797 4.5459 38 1 -0.3269 6.0219 6.4284 39 1 -0.2543 5.1207 8.7164 40 1 0.6559 2.8744 9.1355 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184089616.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:50 Heat of formation + Delta-G solvation = 22.960280 kcal Electronic energy + Delta-G solvation = -22194.136110 eV Core-core repulsion = 18783.861350 eV Total energy + Delta-G solvation = -3410.274761 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.27045 -40.41249 -38.40785 -37.76180 -36.04249 -34.18034 -33.01920 -32.64139 -30.87848 -28.49915 -27.47637 -25.84730 -24.94878 -24.07763 -23.11109 -20.99427 -20.80439 -20.04207 -19.59390 -18.62741 -18.33195 -17.52357 -16.90588 -16.40020 -15.99909 -15.63669 -15.52220 -15.24016 -14.96062 -14.49539 -14.24333 -14.05979 -13.63625 -13.48723 -13.15724 -12.86125 -12.77669 -12.60448 -12.49502 -12.38453 -12.37294 -12.31821 -12.00079 -11.70041 -11.56917 -11.31778 -11.21978 -10.79581 -10.57172 -10.52814 -9.51866 -8.97527 -8.08880 -6.22109 -1.28548 -0.23105 0.32043 0.44063 1.32344 1.43047 1.45138 1.54644 2.43301 2.47657 3.19676 3.23587 3.40138 3.76904 3.85042 3.98811 4.02006 4.09834 4.15715 4.43720 4.52702 4.62738 4.75337 4.76853 4.79316 4.85698 4.94004 5.01527 5.17048 5.20283 5.30112 5.39334 5.54292 5.54675 5.60301 5.69043 5.71739 5.80099 5.88290 6.28341 6.46942 6.51208 6.78239 7.04056 7.47050 8.96241 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024991 B = 0.003109 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.122270 B = 9002.937370 C = 9753.451642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.103 4.103 3 C 0.220 3.780 4 H -0.034 1.034 5 C -0.523 4.523 6 H 0.063 0.937 7 C 0.014 3.986 8 N -0.918 5.918 9 Si 0.957 3.043 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.265 1.265 13 N -0.673 5.673 14 C 0.082 3.918 15 C -0.080 4.080 16 C -0.173 4.173 17 C 0.012 3.988 18 C -0.127 4.127 19 C -0.045 4.045 20 C -0.114 4.114 21 C -0.057 4.057 22 C -0.074 4.074 23 N 0.035 4.965 24 O -0.172 6.172 25 O -0.206 6.206 26 H 0.039 0.961 27 H 0.051 0.949 28 H 0.030 0.970 29 H 0.015 0.985 30 H 0.059 0.941 31 H 0.260 0.740 32 H 0.337 0.663 33 H 0.059 0.941 34 H 0.032 0.968 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.162 0.838 38 H 0.184 0.816 39 H 0.186 0.814 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.352 12.292 20.622 24.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.141 4.141 3 C 0.112 3.888 4 H -0.016 1.016 5 C -0.562 4.562 6 H 0.081 0.919 7 C -0.185 4.185 8 N -0.558 5.558 9 Si 0.783 3.217 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.190 1.190 13 N -0.304 5.304 14 C -0.047 4.047 15 C -0.098 4.098 16 C -0.192 4.192 17 C 0.010 3.990 18 C -0.145 4.145 19 C -0.063 4.063 20 C -0.132 4.132 21 C -0.076 4.076 22 C -0.158 4.158 23 N 0.545 4.455 24 O -0.388 6.388 25 O -0.409 6.409 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.033 0.967 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.154 0.846 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.156 0.844 36 H 0.153 0.847 37 H 0.180 0.820 38 H 0.201 0.799 39 H 0.204 0.796 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.919 12.255 20.482 24.851 hybrid contribution 1.218 -0.282 -1.258 1.773 sum -5.702 11.972 19.224 23.354 Atomic orbital electron populations 1.21296 0.95866 0.98320 1.00892 1.21351 0.96356 0.97985 0.98436 1.18960 0.90592 0.91992 0.87248 1.01643 1.21469 1.31417 1.12108 0.91169 0.91907 1.25681 0.95143 0.95590 1.02095 1.70030 1.36997 1.23619 1.25146 0.85564 0.78917 0.78126 0.79073 1.20265 1.21383 1.18963 1.60714 1.49280 1.16076 1.04355 1.21050 0.94280 0.99026 0.90346 1.23446 0.93892 1.00340 0.92153 1.22338 1.03235 1.01027 0.92606 1.19122 0.94728 0.94882 0.90252 1.21778 0.98786 0.91287 1.02653 1.22090 0.91869 1.00956 0.91372 1.21749 0.98667 0.93526 0.99308 1.21356 0.93272 0.94326 0.98615 1.21464 1.12939 0.83986 0.97387 1.44023 0.98069 1.03614 0.99762 1.94456 1.61980 1.72131 1.10258 1.94464 1.45653 1.63573 1.37250 0.94220 0.93022 0.95090 0.96666 0.92242 0.93037 0.84553 0.92205 0.95048 0.84405 0.84749 0.82011 0.79866 0.79644 0.81881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.77 9.52 71.98 0.69 -4.08 16 2 C -0.10 -5.11 5.61 30.59 0.17 -4.94 16 3 C 0.22 11.01 2.30 44.17 0.10 11.11 16 4 H -0.03 -1.91 7.71 -2.39 -0.02 -1.93 16 5 C -0.52 -27.61 7.36 25.60 0.19 -27.42 16 6 H 0.06 3.20 7.60 -2.91 -0.02 3.18 16 7 C 0.01 0.76 5.30 84.65 0.45 1.21 16 8 N -0.92 -52.69 11.30 21.45 0.24 -52.44 16 9 Si 0.96 42.63 29.54 68.60 2.03 44.66 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 13 N -0.67 -27.22 5.55 -499.45 -2.77 -29.99 16 14 C 0.08 2.90 5.99 85.56 0.51 3.42 16 15 C -0.08 -2.19 9.09 24.54 0.22 -1.97 16 16 C -0.17 -4.88 8.57 23.66 0.20 -4.67 16 17 C 0.01 0.26 5.83 -20.12 -0.12 0.15 16 18 C -0.13 -1.86 9.33 22.52 0.21 -1.65 16 19 C -0.05 -0.35 10.03 22.23 0.22 -0.13 16 20 C -0.11 -0.88 10.04 22.32 0.22 -0.65 16 21 C -0.06 -0.84 9.55 22.23 0.21 -0.63 16 22 C -0.07 -1.73 6.86 36.63 0.25 -1.47 16 23 N 0.04 1.06 4.45 -45.88 -0.20 0.86 16 24 O -0.17 -5.07 18.47 18.89 0.35 -4.73 16 25 O -0.21 -7.05 15.33 18.89 0.29 -6.76 16 26 H 0.04 1.88 7.14 -2.39 -0.02 1.86 16 27 H 0.05 2.18 7.70 -2.38 -0.02 2.16 16 28 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.01 0.71 7.69 -2.39 -0.02 0.69 16 30 H 0.06 3.32 6.01 -2.39 -0.01 3.30 16 31 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 32 H 0.34 12.71 8.12 -89.69 -0.73 11.98 16 33 H 0.06 2.30 7.36 -2.39 -0.02 2.28 16 34 H 0.03 1.16 7.94 -2.39 -0.02 1.14 16 35 H 0.14 2.91 6.36 -2.91 -0.02 2.89 16 36 H 0.14 4.45 5.04 -2.91 -0.01 4.44 16 37 H 0.16 1.90 6.51 -2.91 -0.02 1.88 16 38 H 0.18 0.00 8.06 -2.91 -0.02 -0.02 16 39 H 0.19 -0.05 8.06 -2.91 -0.02 -0.07 16 40 H 0.16 1.95 7.62 -2.91 -0.02 1.92 16 Total: -1.00 -67.57 336.73 3.80 -63.77 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.34 Total: 16.37 kcal Atomic # 6 Polarization: -35.28 SS G_CDS: 3.54 Total: -31.74 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -2.74 Total: -81.58 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.64 Total: -11.48 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -67.57 3.80 -63.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184089616.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.727 kcal (2) G-P(sol) polarization free energy of solvation -67.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds