Wall clock time and date at job start Tue Mar 31 2020 06:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47622 * 2 1 4 4 H 1.09005 * 109.47018 * 305.88206 * 3 2 1 5 5 C 1.50692 * 109.47530 * 185.88229 * 3 2 1 6 6 H 1.08006 * 119.99565 * 244.52952 * 5 3 2 7 7 C 1.37874 * 120.00218 * 64.52391 * 5 3 2 8 8 N 1.31521 * 120.00161 * 199.32567 * 7 5 3 9 9 Si 1.86798 * 119.99775 * 19.33304 * 7 5 3 10 10 H 1.48498 * 109.47210 * 90.73217 * 9 7 5 11 11 H 1.48504 * 109.46758 * 210.73078 * 9 7 5 12 12 H 1.48501 * 109.47295 * 330.72871 * 9 7 5 13 13 N 1.46901 * 109.47132 * 65.87730 * 3 2 1 14 14 C 1.46900 * 111.00305 * 262.56188 * 13 3 2 15 15 C 1.50698 * 109.47297 * 175.15258 * 14 13 3 16 16 C 1.32572 * 120.00016 * 124.99985 * 15 14 13 17 17 C 1.47805 * 120.00051 * 179.97438 * 16 15 14 18 18 C 1.39562 * 120.13996 * 17.02792 * 17 16 15 19 19 C 1.37955 * 119.85441 * 179.97438 * 18 17 16 20 20 C 1.38368 * 120.14333 * 359.97438 * 19 18 17 21 21 C 1.38320 * 120.28543 * 0.02562 * 20 19 18 22 22 C 1.38002 * 120.14230 * 359.74136 * 21 20 19 23 23 N 1.48004 * 120.06929 * 180.27718 * 22 21 20 24 24 O 1.21795 * 120.00458 * 6.30475 * 23 22 21 25 25 O 1.21803 * 119.99714 * 186.30266 * 23 22 21 26 26 H 1.09004 * 109.47381 * 302.30590 * 1 2 3 27 27 H 1.09005 * 109.46833 * 62.30328 * 1 2 3 28 28 H 1.09000 * 109.47404 * 182.30308 * 1 2 3 29 29 H 1.09000 * 109.47138 * 239.99622 * 2 1 3 30 30 H 1.09003 * 109.46988 * 119.99354 * 2 1 3 31 31 H 0.96991 * 119.99694 * 179.97438 * 8 7 5 32 32 H 1.00900 * 111.00295 * 138.61033 * 13 3 2 33 33 H 1.09008 * 109.47040 * 295.15322 * 14 13 3 34 34 H 1.09000 * 109.46986 * 55.14849 * 14 13 3 35 35 H 1.08000 * 120.00231 * 305.00001 * 15 14 13 36 36 H 1.08000 * 119.99753 * 0.02562 * 16 15 14 37 37 H 1.07995 * 120.07064 * 359.95030 * 18 17 16 38 38 H 1.07997 * 119.92780 * 179.97438 * 19 18 17 39 39 H 1.07996 * 119.85269 * 179.97438 * 20 19 18 40 40 H 1.08001 * 119.92897 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5934 1.9858 -0.8327 5 6 3.5400 1.4449 -0.1456 6 1 4.1597 1.8190 0.6560 7 6 4.1212 0.9696 -1.3020 8 7 5.3872 0.6132 -1.3033 9 14 3.1105 0.8320 -2.8669 10 1 3.2239 2.0935 -3.6420 11 1 3.6169 -0.2991 -3.6852 12 1 1.6872 0.5919 -2.5175 13 7 1.6697 2.0928 1.2640 14 6 0.4455 2.8895 1.1073 15 6 0.0314 3.4429 2.4464 16 6 -0.1491 4.7475 2.5974 17 6 -0.5559 5.2902 3.9107 18 6 -0.4109 4.5174 5.0637 19 6 -0.7919 5.0300 6.2865 20 6 -1.3164 6.3076 6.3714 21 6 -1.4627 7.0787 5.2324 22 6 -1.0809 6.5794 4.0038 23 7 -1.2324 7.4082 2.7870 24 8 -1.5856 8.5700 2.8814 25 8 -1.0040 6.9283 1.6910 26 1 -0.3634 0.5492 0.8686 27 1 -0.3633 0.4777 -0.9100 28 1 -0.3634 -1.0268 0.0413 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 5.7959 0.2785 -2.1168 32 1 2.4273 2.6595 1.6148 33 1 0.6330 3.7117 0.4166 34 1 -0.3508 2.2582 0.7130 35 1 -0.1184 2.7766 3.2832 36 1 0.0003 5.4137 1.7606 37 1 -0.0016 3.5201 4.9987 38 1 -0.6806 4.4328 7.1794 39 1 -1.6136 6.7040 7.3310 40 1 -1.8731 8.0750 5.3052 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184089635.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:52 Heat of formation + Delta-G solvation = 44.291677 kcal Electronic energy + Delta-G solvation = -22230.198042 eV Core-core repulsion = 18820.848280 eV Total energy + Delta-G solvation = -3409.349762 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.28788 -39.69180 -37.10261 -36.66780 -34.78219 -32.52936 -32.23671 -31.55352 -29.91291 -27.65088 -26.49633 -24.62508 -23.22124 -22.53576 -22.05958 -19.90377 -19.52441 -19.08227 -18.63711 -17.61075 -17.14984 -16.70309 -15.65139 -15.53591 -15.03743 -14.61146 -14.08649 -13.84073 -13.57359 -13.34325 -12.91259 -12.75441 -12.68674 -12.33581 -11.99773 -11.91585 -11.60104 -11.51788 -11.45784 -11.21918 -10.83663 -10.74214 -10.63121 -10.34804 -10.21127 -9.90995 -9.85345 -9.50372 -9.22223 -8.58773 -8.40815 -7.55267 -6.18429 -4.11620 -0.38464 0.45430 1.18963 1.31736 2.20117 3.17629 3.26154 3.35841 3.39231 4.04144 4.09925 4.35435 4.38059 4.55567 4.63837 4.83869 5.00136 5.12006 5.28856 5.32316 5.38954 5.55049 5.64652 5.75443 5.92318 5.93513 5.99081 6.02021 6.10943 6.23144 6.38059 6.53623 6.62782 6.70613 6.73577 6.97836 7.00963 7.41200 7.59915 7.62301 7.89753 8.27174 8.55035 8.91467 9.48999 10.94327 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021586 B = 0.003307 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.810829 B = 8464.267259 C = 8934.070064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C 0.192 3.808 4 H 0.004 0.996 5 C -0.537 4.537 6 H 0.076 0.924 7 C 0.081 3.919 8 N -0.885 5.885 9 Si 0.862 3.138 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.254 1.254 13 N -0.676 5.676 14 C 0.069 3.931 15 C -0.072 4.072 16 C -0.186 4.186 17 C 0.038 3.962 18 C -0.125 4.125 19 C -0.062 4.062 20 C -0.133 4.133 21 C -0.052 4.052 22 C -0.052 4.052 23 N 0.035 4.965 24 O -0.172 6.172 25 O -0.154 6.154 26 H 0.057 0.943 27 H 0.038 0.962 28 H 0.036 0.964 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.264 0.736 32 H 0.341 0.659 33 H 0.036 0.964 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.159 0.841 37 H 0.151 0.849 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.024 8.737 15.119 23.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.145 4.145 3 C 0.084 3.916 4 H 0.022 0.978 5 C -0.575 4.575 6 H 0.094 0.906 7 C -0.123 4.123 8 N -0.521 5.521 9 Si 0.689 3.311 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.178 1.178 13 N -0.308 5.308 14 C -0.060 4.060 15 C -0.090 4.090 16 C -0.205 4.205 17 C 0.037 3.963 18 C -0.144 4.144 19 C -0.080 4.080 20 C -0.152 4.152 21 C -0.071 4.071 22 C -0.136 4.136 23 N 0.551 4.449 24 O -0.385 6.385 25 O -0.369 6.369 26 H 0.076 0.924 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.159 0.841 33 H 0.054 0.946 34 H 0.106 0.894 35 H 0.134 0.866 36 H 0.176 0.824 37 H 0.168 0.832 38 H 0.160 0.840 39 H 0.162 0.838 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.121 7.720 15.807 23.197 hybrid contribution -0.085 0.874 -1.683 1.898 sum -15.206 8.593 14.124 22.462 Atomic orbital electron populations 1.21982 0.98797 0.99805 1.00576 1.21805 0.92501 0.99288 1.00886 1.19463 0.95640 0.90773 0.85757 0.97793 1.21129 0.89350 1.43815 1.03200 0.90645 1.24874 0.94778 0.93722 0.98901 1.70021 1.12954 1.40977 1.28151 0.87160 0.82134 0.77884 0.83947 1.20575 1.21301 1.17814 1.60548 1.05154 1.33462 1.31599 1.21346 0.95794 0.96606 0.92286 1.23753 0.91285 0.94796 0.99175 1.22514 1.05210 0.97458 0.95323 1.19087 0.91467 0.89829 0.95946 1.21524 1.01231 1.00913 0.90684 1.21568 0.93072 0.95116 0.98233 1.21196 1.01358 0.94531 0.98120 1.20979 0.95375 1.01063 0.89712 1.21165 1.13580 0.93448 0.85397 1.43564 0.97688 1.01008 1.02590 1.94512 1.49220 1.01280 1.93500 1.94444 1.52931 1.75378 1.14129 0.92409 0.94298 0.94486 0.93219 0.92210 0.92581 0.84093 0.94604 0.89374 0.86612 0.82434 0.83167 0.83979 0.83819 0.83170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.98 37.16 0.33 -2.39 16 2 C -0.11 -2.28 4.96 -26.73 -0.13 -2.41 16 3 C 0.19 4.36 1.76 -68.87 -0.12 4.24 16 4 H 0.00 0.10 6.22 -51.93 -0.32 -0.22 16 5 C -0.54 -14.57 8.97 -34.45 -0.31 -14.88 16 6 H 0.08 2.21 7.73 -52.48 -0.41 1.80 16 7 C 0.08 2.28 5.27 -17.82 -0.09 2.18 16 8 N -0.88 -26.40 13.96 55.43 0.77 -25.62 16 9 Si 0.86 20.92 25.87 -169.99 -4.40 16.52 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.25 -5.83 5.75 56.52 0.32 -5.51 16 13 N -0.68 -12.95 6.10 -109.22 -0.67 -13.61 16 14 C 0.07 1.10 5.44 -4.98 -0.03 1.07 16 15 C -0.07 -0.94 9.18 -36.22 -0.33 -1.27 16 16 C -0.19 -2.45 8.58 -37.58 -0.32 -2.77 16 17 C 0.04 0.44 5.83 -105.02 -0.61 -0.17 16 18 C -0.13 -1.09 9.33 -39.19 -0.37 -1.46 16 19 C -0.06 -0.40 10.03 -39.64 -0.40 -0.79 16 20 C -0.13 -0.84 10.04 -39.50 -0.40 -1.24 16 21 C -0.05 -0.45 9.55 -39.64 -0.38 -0.83 16 22 C -0.05 -0.62 6.87 -79.57 -0.55 -1.16 16 23 N 0.04 0.50 4.45 34.15 0.15 0.65 16 24 O -0.17 -2.47 18.47 -29.46 -0.54 -3.01 16 25 O -0.15 -2.39 15.32 -29.46 -0.45 -2.85 16 26 H 0.06 0.94 5.78 -51.93 -0.30 0.64 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 1.13 5.34 -51.93 -0.28 0.85 16 30 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.34 6.69 8.03 -39.29 -0.32 6.37 16 33 H 0.04 0.60 7.81 -51.92 -0.41 0.20 16 34 H 0.09 1.38 5.39 -51.93 -0.28 1.10 16 35 H 0.12 1.32 6.36 -52.49 -0.33 0.98 16 36 H 0.16 2.30 5.02 -52.49 -0.26 2.04 16 37 H 0.15 1.14 6.50 -52.49 -0.34 0.80 16 38 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 39 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 40 H 0.15 1.08 7.62 -52.49 -0.40 0.68 16 LS Contribution 329.59 15.07 4.97 4.97 Total: -1.00 -30.72 329.59 -8.84 -39.56 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.97 Total: 5.27 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -3.70 Total: -21.89 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.26 Total: -38.58 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: -1.00 Total: -5.86 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.40 Total: 16.52 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.72 -8.84 -39.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184089635.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.853 kcal (2) G-P(sol) polarization free energy of solvation -30.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds