Wall clock time and date at job start Tue Mar 31 2020 06:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47622 * 2 1 4 4 H 1.09005 * 109.47018 * 305.88206 * 3 2 1 5 5 C 1.50692 * 109.47530 * 185.88229 * 3 2 1 6 6 H 1.08006 * 119.99565 * 244.52952 * 5 3 2 7 7 C 1.37874 * 120.00218 * 64.52391 * 5 3 2 8 8 N 1.31521 * 120.00161 * 199.32567 * 7 5 3 9 9 Si 1.86798 * 119.99775 * 19.33304 * 7 5 3 10 10 H 1.48498 * 109.47210 * 90.73217 * 9 7 5 11 11 H 1.48504 * 109.46758 * 210.73078 * 9 7 5 12 12 H 1.48501 * 109.47295 * 330.72871 * 9 7 5 13 13 N 1.46901 * 109.47132 * 65.87730 * 3 2 1 14 14 C 1.46900 * 111.00305 * 262.56188 * 13 3 2 15 15 C 1.50698 * 109.47297 * 175.15258 * 14 13 3 16 16 C 1.32572 * 120.00016 * 124.99985 * 15 14 13 17 17 C 1.47805 * 120.00051 * 179.97438 * 16 15 14 18 18 C 1.39562 * 120.13996 * 17.02792 * 17 16 15 19 19 C 1.37955 * 119.85441 * 179.97438 * 18 17 16 20 20 C 1.38368 * 120.14333 * 359.97438 * 19 18 17 21 21 C 1.38320 * 120.28543 * 0.02562 * 20 19 18 22 22 C 1.38002 * 120.14230 * 359.74136 * 21 20 19 23 23 N 1.48004 * 120.06929 * 180.27718 * 22 21 20 24 24 O 1.21795 * 120.00458 * 6.30475 * 23 22 21 25 25 O 1.21803 * 119.99714 * 186.30266 * 23 22 21 26 26 H 1.09004 * 109.47381 * 302.30590 * 1 2 3 27 27 H 1.09005 * 109.46833 * 62.30328 * 1 2 3 28 28 H 1.09000 * 109.47404 * 182.30308 * 1 2 3 29 29 H 1.09000 * 109.47138 * 239.99622 * 2 1 3 30 30 H 1.09003 * 109.46988 * 119.99354 * 2 1 3 31 31 H 0.96991 * 119.99694 * 179.97438 * 8 7 5 32 32 H 1.00900 * 111.00295 * 138.61033 * 13 3 2 33 33 H 1.09008 * 109.47040 * 295.15322 * 14 13 3 34 34 H 1.09000 * 109.46986 * 55.14849 * 14 13 3 35 35 H 1.08000 * 120.00231 * 305.00001 * 15 14 13 36 36 H 1.08000 * 119.99753 * 0.02562 * 16 15 14 37 37 H 1.07995 * 120.07064 * 359.95030 * 18 17 16 38 38 H 1.07997 * 119.92780 * 179.97438 * 19 18 17 39 39 H 1.07996 * 119.85269 * 179.97438 * 20 19 18 40 40 H 1.08001 * 119.92897 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5934 1.9858 -0.8327 5 6 3.5400 1.4449 -0.1456 6 1 4.1597 1.8190 0.6560 7 6 4.1212 0.9696 -1.3020 8 7 5.3872 0.6132 -1.3033 9 14 3.1105 0.8320 -2.8669 10 1 3.2239 2.0935 -3.6420 11 1 3.6169 -0.2991 -3.6852 12 1 1.6872 0.5919 -2.5175 13 7 1.6697 2.0928 1.2640 14 6 0.4455 2.8895 1.1073 15 6 0.0314 3.4429 2.4464 16 6 -0.1491 4.7475 2.5974 17 6 -0.5559 5.2902 3.9107 18 6 -0.4109 4.5174 5.0637 19 6 -0.7919 5.0300 6.2865 20 6 -1.3164 6.3076 6.3714 21 6 -1.4627 7.0787 5.2324 22 6 -1.0809 6.5794 4.0038 23 7 -1.2324 7.4082 2.7870 24 8 -1.5856 8.5700 2.8814 25 8 -1.0040 6.9283 1.6910 26 1 -0.3634 0.5492 0.8686 27 1 -0.3633 0.4777 -0.9100 28 1 -0.3634 -1.0268 0.0413 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 5.7959 0.2785 -2.1168 32 1 2.4273 2.6595 1.6148 33 1 0.6330 3.7117 0.4166 34 1 -0.3508 2.2582 0.7130 35 1 -0.1184 2.7766 3.2832 36 1 0.0003 5.4137 1.7606 37 1 -0.0016 3.5201 4.9987 38 1 -0.6806 4.4328 7.1794 39 1 -1.6136 6.7040 7.3310 40 1 -1.8731 8.0750 5.3052 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184089635.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:52 Heat of formation + Delta-G solvation = 25.557696 kcal Electronic energy + Delta-G solvation = -22231.010408 eV Core-core repulsion = 18820.848280 eV Total energy + Delta-G solvation = -3410.162128 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.28403 -40.42137 -38.58548 -37.78366 -35.97119 -34.33748 -33.11707 -32.85383 -31.07126 -29.20693 -27.55809 -25.84456 -24.37943 -23.85406 -23.06169 -21.48059 -20.69402 -20.03564 -19.60263 -19.02058 -18.61237 -17.63240 -17.17072 -16.42624 -15.93000 -15.90179 -15.51095 -15.01308 -14.73305 -14.67871 -14.40251 -14.07922 -13.87427 -13.55473 -13.35856 -13.13276 -12.95082 -12.69526 -12.62355 -12.53905 -12.35549 -12.33220 -11.94318 -11.69409 -11.58436 -11.24569 -11.23227 -11.12002 -10.57729 -10.55883 -9.45464 -9.15790 -8.36056 -6.32593 -1.29765 -0.23855 0.31165 0.42742 1.30802 1.31736 1.36625 1.45934 2.32704 2.46680 2.98181 3.20325 3.39619 3.67860 3.77098 3.98556 4.03821 4.11631 4.18006 4.38880 4.47394 4.51966 4.58021 4.64718 4.75837 4.76214 4.84957 4.91460 5.01106 5.16915 5.18762 5.23146 5.28508 5.40352 5.53065 5.56110 5.58480 5.66853 5.81988 5.98842 6.45587 6.49998 6.63761 6.83430 7.31825 8.80370 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021586 B = 0.003307 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.810829 B = 8464.267259 C = 8934.070064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C 0.196 3.804 4 H 0.000 1.000 5 C -0.542 4.542 6 H 0.039 0.961 7 C 0.027 3.973 8 N -0.933 5.933 9 Si 0.923 3.077 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.231 1.231 13 N -0.671 5.671 14 C 0.071 3.929 15 C -0.077 4.077 16 C -0.181 4.181 17 C 0.012 3.988 18 C -0.127 4.127 19 C -0.045 4.045 20 C -0.114 4.114 21 C -0.057 4.057 22 C -0.074 4.074 23 N 0.036 4.964 24 O -0.174 6.174 25 O -0.204 6.204 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.058 0.942 29 H 0.034 0.966 30 H 0.050 0.950 31 H 0.266 0.734 32 H 0.335 0.665 33 H 0.021 0.979 34 H 0.096 0.904 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.163 0.837 38 H 0.184 0.816 39 H 0.186 0.814 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.631 8.489 17.819 26.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C 0.087 3.913 4 H 0.017 0.983 5 C -0.579 4.579 6 H 0.057 0.943 7 C -0.173 4.173 8 N -0.572 5.572 9 Si 0.747 3.253 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.154 1.154 13 N -0.301 5.301 14 C -0.058 4.058 15 C -0.096 4.096 16 C -0.200 4.200 17 C 0.011 3.989 18 C -0.145 4.145 19 C -0.063 4.063 20 C -0.133 4.133 21 C -0.076 4.076 22 C -0.158 4.158 23 N 0.546 4.454 24 O -0.390 6.390 25 O -0.409 6.409 26 H 0.089 0.911 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.152 0.848 33 H 0.039 0.961 34 H 0.114 0.886 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.180 0.820 38 H 0.201 0.799 39 H 0.203 0.797 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -17.741 7.445 18.455 26.660 hybrid contribution 0.741 1.068 -2.236 2.586 sum -17.001 8.512 16.220 24.991 Atomic orbital electron populations 1.21891 0.95398 1.01620 1.01417 1.21702 0.95515 0.97532 0.99725 1.19341 0.92571 0.92252 0.87184 0.98274 1.21465 0.91740 1.42642 1.02093 0.94306 1.25688 0.95795 0.93611 1.02179 1.70140 1.14980 1.42939 1.29114 0.86179 0.81754 0.77755 0.79621 1.20534 1.21000 1.15420 1.60530 1.05986 1.34095 1.29492 1.21346 0.94415 0.95882 0.94108 1.23513 0.92819 0.94944 0.98276 1.22440 1.04336 0.97175 0.96020 1.19115 0.93453 0.90393 0.95981 1.21792 1.00934 1.01151 0.90608 1.22091 0.90436 0.95276 0.98498 1.21743 0.98919 0.93921 0.98673 1.21353 0.95032 1.02081 0.89140 1.21469 1.15747 0.93608 0.85010 1.44016 0.96971 1.01108 1.03307 1.94461 1.48797 1.02043 1.93678 1.94449 1.55169 1.75606 1.15633 0.91067 0.93941 0.92267 0.94740 0.93140 0.92464 0.84776 0.96068 0.88607 0.84264 0.84733 0.81986 0.79915 0.79690 0.81925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.76 8.98 71.98 0.65 -4.12 16 2 C -0.11 -4.44 4.96 30.59 0.15 -4.29 16 3 C 0.20 8.92 1.76 44.17 0.08 9.00 16 4 H 0.00 -0.02 6.22 -2.38 -0.01 -0.03 16 5 C -0.54 -30.34 8.97 25.60 0.23 -30.11 16 6 H 0.04 2.40 7.73 -2.91 -0.02 2.37 16 7 C 0.03 1.54 5.27 84.65 0.45 1.99 16 8 N -0.93 -57.57 13.96 21.45 0.30 -57.27 16 9 Si 0.92 43.63 25.87 68.60 1.77 45.40 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 11 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 12 H -0.23 -10.00 5.75 99.48 0.57 -9.43 16 13 N -0.67 -25.79 6.10 -499.46 -3.05 -28.84 16 14 C 0.07 2.26 5.44 85.56 0.47 2.73 16 15 C -0.08 -1.98 9.18 24.53 0.23 -1.75 16 16 C -0.18 -4.83 8.58 23.65 0.20 -4.63 16 17 C 0.01 0.27 5.83 -20.12 -0.12 0.15 16 18 C -0.13 -1.81 9.33 22.52 0.21 -1.60 16 19 C -0.05 -0.35 10.03 22.23 0.22 -0.12 16 20 C -0.11 -0.86 10.04 22.32 0.22 -0.63 16 21 C -0.06 -0.83 9.55 22.23 0.21 -0.62 16 22 C -0.07 -1.70 6.87 36.63 0.25 -1.45 16 23 N 0.04 1.06 4.45 -45.87 -0.20 0.86 16 24 O -0.17 -5.07 18.47 18.89 0.35 -4.72 16 25 O -0.20 -6.81 15.32 18.88 0.29 -6.52 16 26 H 0.07 2.12 5.78 -2.38 -0.01 2.11 16 27 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.03 1.52 5.34 -2.39 -0.01 1.51 16 30 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 32 H 0.34 13.56 8.03 -89.69 -0.72 12.84 16 33 H 0.02 0.73 7.81 -2.38 -0.02 0.71 16 34 H 0.10 2.88 5.39 -2.39 -0.01 2.87 16 35 H 0.14 2.87 6.36 -2.91 -0.02 2.85 16 36 H 0.14 4.24 5.02 -2.93 -0.01 4.23 16 37 H 0.16 1.89 6.50 -2.91 -0.02 1.87 16 38 H 0.18 0.00 8.06 -2.91 -0.02 -0.02 16 39 H 0.19 -0.06 8.06 -2.91 -0.02 -0.08 16 40 H 0.16 1.91 7.62 -2.91 -0.02 1.89 16 Total: -1.00 -71.12 329.59 3.13 -67.99 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.22 Total: 18.55 kcal Atomic # 6 Polarization: -38.91 SS G_CDS: 3.45 Total: -35.46 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -2.95 Total: -85.25 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.64 Total: -11.24 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.77 Total: 45.40 kcal Total: -71.12 3.13 -67.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184089635.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.552 kcal (2) G-P(sol) polarization free energy of solvation -71.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds