Wall clock time and date at job start Tue Mar 31 2020 06:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46937 * 2 1 4 4 H 1.09003 * 109.47290 * 305.80499 * 3 2 1 5 5 C 1.50696 * 109.47594 * 185.79817 * 3 2 1 6 6 H 1.07997 * 120.00459 * 245.28091 * 5 3 2 7 7 C 1.37884 * 119.99877 * 65.27327 * 5 3 2 8 8 N 1.31513 * 120.00176 * 186.14320 * 7 5 3 9 9 Si 1.86801 * 119.99879 * 6.13791 * 7 5 3 10 10 H 1.48500 * 109.47074 * 270.00250 * 9 7 5 11 11 H 1.48499 * 109.47128 * 29.99799 * 9 7 5 12 12 H 1.48492 * 109.47088 * 150.00182 * 9 7 5 13 13 N 1.46504 * 109.47191 * 65.79631 * 3 2 1 14 14 C 1.34776 * 120.00109 * 275.00400 * 13 3 2 15 15 O 1.21589 * 120.00412 * 359.97438 * 14 13 3 16 16 N 1.34784 * 119.99820 * 180.02562 * 14 13 3 17 17 C 1.40142 * 119.99619 * 184.86570 * 16 14 13 18 18 C 1.38859 * 120.19119 * 144.73309 * 17 16 14 19 19 C 1.37866 * 120.28043 * 179.82483 * 18 17 16 20 20 C 1.39288 * 120.33641 * 0.06671 * 19 18 17 21 21 C 1.38877 * 118.98427 * 0.18205 * 20 19 18 22 22 C 1.37703 * 120.85810 * 359.38243 * 21 20 19 23 23 C 1.51664 * 107.04596 * 179.45423 * 21 20 19 24 24 C 1.54697 * 101.92823 * 344.48623 * 23 21 20 25 25 O 1.36243 * 129.80222 * 180.61667 * 20 19 18 26 26 H 1.09009 * 109.46427 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47346 * 299.99488 * 1 2 3 28 28 H 1.08998 * 109.47344 * 60.00616 * 1 2 3 29 29 H 1.08995 * 109.47155 * 239.99999 * 2 1 3 30 30 H 1.09003 * 109.47082 * 119.99766 * 2 1 3 31 31 H 0.97003 * 119.99691 * 354.96250 * 8 7 5 32 32 H 0.96999 * 119.99991 * 94.99853 * 13 3 2 33 33 H 0.96998 * 120.00183 * 4.86131 * 16 14 13 34 34 H 1.08002 * 119.85840 * 359.79146 * 18 17 16 35 35 H 1.08002 * 119.83642 * 180.08925 * 19 18 17 36 36 H 1.07995 * 120.04193 * 180.58070 * 22 21 20 37 37 H 1.08999 * 110.94119 * 226.32578 * 23 21 20 38 38 H 1.09004 * 110.97122 * 102.65756 * 23 21 20 39 39 H 1.08993 * 110.75085 * 267.01472 * 24 23 21 40 40 H 1.09008 * 110.74779 * 143.66514 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5943 1.9855 -0.8335 5 6 3.5401 1.4451 -0.1435 6 1 4.1592 1.8083 0.6634 7 6 4.1223 0.9836 -1.3051 8 7 5.4302 0.8722 -1.3859 9 14 3.0533 0.5164 -2.7640 10 1 2.6879 -0.9199 -2.6702 11 1 1.8192 1.3424 -2.7580 12 1 3.8027 0.7553 -4.0234 13 7 1.6689 2.0917 1.2598 14 6 0.4532 2.6579 1.3936 15 8 -0.3355 2.6304 0.4686 16 7 0.1120 3.2556 2.5525 17 6 -1.1860 3.7541 2.7281 18 6 -1.7955 3.6913 3.9742 19 6 -3.0709 4.1844 4.1498 20 6 -3.7605 4.7490 3.0794 21 6 -3.1450 4.8029 1.8356 22 6 -1.8679 4.3195 1.6580 23 6 -4.1299 5.4483 0.8798 24 6 -5.4550 5.3510 1.6721 25 8 -5.0067 5.2981 3.0370 26 1 -0.3632 -1.0278 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 5.9894 1.1828 -0.6566 32 1 2.2981 2.1139 1.9977 33 1 0.7647 3.3406 3.2649 34 1 -1.2684 3.2537 4.8091 35 1 -3.5376 4.1332 5.1225 36 1 -1.3984 4.3765 0.6872 37 1 -4.1917 4.8880 -0.0531 38 1 -3.8649 6.4886 0.6902 39 1 -5.9969 4.4429 1.4082 40 1 -6.0721 6.2334 1.5024 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184559092.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:22 Heat of formation + Delta-G solvation = -34.233144 kcal Electronic energy + Delta-G solvation = -23006.937405 eV Core-core repulsion = 19594.182551 eV Total energy + Delta-G solvation = -3412.754854 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.15246 -39.93670 -37.58856 -35.44404 -34.02030 -32.68777 -32.44924 -31.40437 -29.32306 -28.69301 -27.02820 -23.83461 -22.64062 -22.22245 -21.71626 -20.77844 -19.76724 -18.56728 -17.57887 -17.41286 -16.81318 -16.44492 -15.99866 -15.22139 -14.98862 -14.13184 -14.01573 -13.68951 -13.38399 -13.26687 -13.14001 -12.96099 -12.59989 -12.50284 -12.43111 -12.27581 -11.88292 -11.85621 -11.26424 -10.96733 -10.88195 -10.69955 -10.49003 -9.89115 -9.78637 -9.57774 -9.49419 -8.91021 -8.81859 -8.56912 -8.18205 -7.57413 -6.58898 -4.26994 1.24774 1.40606 3.00298 3.24845 3.34408 3.43926 3.51632 3.57590 3.86790 4.33606 4.38499 4.48694 4.81040 4.84403 4.90666 5.10865 5.17013 5.20297 5.27477 5.56713 5.64432 5.69576 5.86999 6.00024 6.02800 6.06524 6.21615 6.34492 6.39185 6.48313 6.65434 6.73859 6.83069 6.86941 6.99339 7.14819 7.22555 7.35801 7.45734 7.72563 8.20293 8.57861 8.69702 9.08840 9.43839 10.81789 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028639 B = 0.003702 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.445839 B = 7560.662718 C = 7967.350135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.258 3.742 4 H 0.050 0.950 5 C -0.610 4.610 6 H 0.062 0.938 7 C 0.036 3.964 8 N -0.904 5.904 9 Si 1.049 2.951 10 H -0.280 1.280 11 H -0.272 1.272 12 H -0.287 1.287 13 N -0.712 5.712 14 C 0.694 3.306 15 O -0.579 6.579 16 N -0.694 5.694 17 C 0.153 3.847 18 C -0.120 4.120 19 C -0.119 4.119 20 C 0.076 3.924 21 C -0.155 4.155 22 C -0.070 4.070 23 C -0.110 4.110 24 C 0.053 3.947 25 O -0.309 6.309 26 H 0.030 0.970 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.268 0.732 32 H 0.390 0.610 33 H 0.404 0.596 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.146 0.854 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.088 7.229 9.288 20.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.176 4.176 3 C 0.154 3.846 4 H 0.068 0.932 5 C -0.648 4.648 6 H 0.080 0.920 7 C -0.170 4.170 8 N -0.538 5.538 9 Si 0.877 3.123 10 H -0.207 1.207 11 H -0.198 1.198 12 H -0.214 1.214 13 N -0.363 5.363 14 C 0.394 3.606 15 O -0.457 6.457 16 N -0.343 5.343 17 C 0.058 3.942 18 C -0.141 4.141 19 C -0.138 4.138 20 C 0.031 3.969 21 C -0.156 4.156 22 C -0.091 4.091 23 C -0.147 4.147 24 C -0.022 4.022 25 O -0.224 6.224 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.223 0.777 33 H 0.238 0.762 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.164 0.836 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.786 6.576 7.006 20.216 hybrid contribution 0.745 0.568 2.198 2.389 sum -17.041 7.144 9.204 20.643 Atomic orbital electron populations 1.21875 0.97052 0.98862 1.02257 1.22269 0.94114 0.99965 1.01282 1.19174 0.95743 0.88284 0.81360 0.93249 1.22171 0.89707 1.48690 1.04252 0.92014 1.25702 0.97564 0.93642 1.00055 1.70836 1.04073 1.42571 1.36304 0.83950 0.75326 0.77222 0.75791 1.20678 1.19795 1.21393 1.45540 1.13225 1.58649 1.18877 1.16111 0.83559 0.78608 0.82288 1.90873 1.51017 1.64885 1.38966 1.42732 1.11546 1.61773 1.18202 1.17285 0.85521 0.97558 0.93872 1.20575 0.94368 1.02371 0.96786 1.19903 0.94488 1.01679 0.97736 1.19489 0.85766 0.96670 0.94979 1.20604 0.96083 1.03857 0.95101 1.20509 0.93033 0.95284 1.00258 1.21779 0.92357 1.01826 0.98764 1.23789 0.96429 1.02948 0.79050 1.86801 1.29645 1.77206 1.28731 0.95118 0.93057 0.92909 0.92238 0.92790 0.92134 0.77747 0.76152 0.85018 0.85383 0.83605 0.88899 0.89217 0.90699 0.87858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.53 37.16 0.32 -2.57 16 2 C -0.14 -3.01 5.20 -26.73 -0.14 -3.15 16 3 C 0.26 6.02 1.81 -69.08 -0.12 5.90 16 4 H 0.05 1.27 6.06 -51.93 -0.31 0.96 16 5 C -0.61 -16.19 9.09 -34.44 -0.31 -16.50 16 6 H 0.06 1.71 7.95 -52.49 -0.42 1.29 16 7 C 0.04 1.01 5.43 -17.82 -0.10 0.91 16 8 N -0.90 -26.81 13.70 55.43 0.76 -26.05 16 9 Si 1.05 25.16 25.36 -169.99 -4.31 20.84 16 10 H -0.28 -6.38 6.76 56.52 0.38 -5.99 16 11 H -0.27 -6.32 6.36 56.52 0.36 -5.96 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.71 -13.84 5.03 -59.81 -0.30 -14.14 16 14 C 0.69 12.89 7.02 -86.91 -0.61 12.28 16 15 O -0.58 -12.41 10.95 5.29 0.06 -12.36 16 16 N -0.69 -9.99 5.35 -14.16 -0.08 -10.06 16 17 C 0.15 2.20 6.30 -83.58 -0.53 1.67 16 18 C -0.12 -1.42 9.94 -39.49 -0.39 -1.81 16 19 C -0.12 -1.41 10.06 -39.33 -0.40 -1.81 16 20 C 0.08 1.01 7.04 -38.95 -0.27 0.73 16 21 C -0.15 -2.11 6.26 -104.11 -0.65 -2.76 16 22 C -0.07 -1.08 8.69 -39.53 -0.34 -1.43 16 23 C -0.11 -1.13 7.12 -26.51 -0.19 -1.32 16 24 C 0.05 0.48 8.01 38.05 0.30 0.78 16 25 O -0.31 -3.83 11.11 -20.52 -0.23 -4.05 16 26 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 27 H 0.05 1.04 5.63 -51.93 -0.29 0.75 16 28 H 0.05 1.11 7.89 -51.93 -0.41 0.70 16 29 H 0.06 1.36 4.43 -51.93 -0.23 1.13 16 30 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.27 7.86 8.72 -40.82 -0.36 7.51 16 32 H 0.39 6.66 8.55 -40.82 -0.35 6.31 16 33 H 0.40 4.46 8.84 -40.82 -0.36 4.10 16 34 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.15 2.54 6.27 -52.49 -0.33 2.21 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.65 8.14 -51.92 -0.42 0.23 16 LS Contribution 321.51 15.07 4.85 4.85 Total: -1.00 -31.83 321.51 -7.99 -39.81 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -5.30 Total: 10.22 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -3.43 Total: -9.06 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: 0.38 Total: -50.25 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.17 Total: -16.41 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -4.31 Total: 20.84 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.83 -7.99 -39.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184559092.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.582 kcal (2) G-P(sol) polarization free energy of solvation -31.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds