Wall clock time and date at job start Tue Mar 31 2020 06:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46914 * 2 1 4 4 H 1.08993 * 109.47295 * 305.55300 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55318 * 3 2 1 6 6 H 1.08004 * 120.00150 * 245.60461 * 5 3 2 7 7 C 1.37879 * 120.00154 * 65.60852 * 5 3 2 8 8 N 1.31514 * 120.00263 * 196.28627 * 7 5 3 9 9 Si 1.86803 * 120.00061 * 16.28010 * 7 5 3 10 10 H 1.48491 * 109.47220 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.47391 * 300.00728 * 9 7 5 12 12 H 1.48507 * 109.46974 * 60.00396 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55540 * 3 2 1 14 14 C 1.34771 * 119.99789 * 274.99899 * 13 3 2 15 15 O 1.21470 * 120.00323 * 359.97438 * 14 13 3 16 16 C 1.48464 * 119.99864 * 179.97438 * 14 13 3 17 17 C 1.38289 * 120.53592 * 179.97438 * 16 14 13 18 18 C 1.40963 * 119.01510 * 179.97438 * 17 16 14 19 19 O 1.22008 * 119.96658 * 180.02562 * 18 17 16 20 20 N 1.34596 * 120.06938 * 0.02562 * 18 17 16 21 21 H 0.96998 * 119.44162 * 180.02562 * 20 18 17 22 22 C 1.35698 * 121.12040 * 359.97438 * 20 18 17 23 23 C 1.50708 * 119.50050 * 180.02562 * 22 20 18 24 24 C 1.52997 * 117.49686 * 8.74861 * 23 22 20 25 25 C 1.52989 * 117.49879 * 300.08854 * 23 22 20 26 26 C 1.35264 * 121.00150 * 359.73141 * 22 20 18 27 27 H 1.09005 * 109.47083 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47210 * 299.99485 * 1 2 3 29 29 H 1.08998 * 109.47621 * 60.00436 * 1 2 3 30 30 H 1.09008 * 109.47032 * 240.00580 * 2 1 3 31 31 H 1.09000 * 109.47548 * 120.00343 * 2 1 3 32 32 H 0.97001 * 119.99410 * 354.82986 * 8 7 5 33 33 H 0.97002 * 119.99591 * 94.99593 * 13 3 2 34 34 H 1.08002 * 120.49700 * 0.02562 * 17 16 14 35 35 H 1.08995 * 115.54643 * 154.41523 * 23 22 20 36 36 H 1.09003 * 117.49866 * 359.97438 * 24 23 22 37 37 H 1.08998 * 117.49588 * 145.01923 * 24 23 22 38 38 H 1.09004 * 117.50146 * 214.97893 * 25 23 22 39 39 H 1.09006 * 117.50267 * 359.97438 * 25 23 22 40 40 H 1.07999 * 120.06908 * 180.25806 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4448 -0.1375 6 1 4.1567 1.8042 0.6735 7 6 4.1272 0.9880 -1.2987 8 7 5.4072 0.6862 -1.3142 9 14 3.1039 0.7978 -2.8499 10 1 3.9632 0.2936 -3.9510 11 1 2.0023 -0.1664 -2.6011 12 1 2.5326 2.1146 -3.2306 13 7 1.6638 2.0934 1.2574 14 6 0.4476 2.6599 1.3854 15 8 -0.3365 2.6312 0.4582 16 6 0.0662 3.3190 2.6599 17 6 -1.1785 3.9042 2.8032 18 6 -1.5073 4.5208 4.0275 19 8 -2.6008 5.0420 4.1730 20 7 -0.6162 4.5352 5.0361 21 1 -0.8521 4.9616 5.8747 22 6 0.6064 3.9623 4.9000 23 6 1.5758 3.9991 6.0533 24 6 1.0538 4.5068 7.3989 25 6 2.0061 5.3730 6.5707 26 6 0.9660 3.3534 3.7469 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 5.9548 0.8552 -0.5316 33 1 2.2901 2.1166 1.9978 34 1 -1.8886 3.8884 1.9896 35 1 2.3171 3.2002 6.0700 36 1 0.0094 4.8146 7.4498 37 1 1.4520 4.0422 8.3008 38 1 3.0305 5.4780 6.9283 39 1 1.5885 6.2504 6.0768 40 1 1.9414 2.8986 3.6564 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186375612.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:36 Heat of formation + Delta-G solvation = -22.383771 kcal Electronic energy + Delta-G solvation = -22946.961511 eV Core-core repulsion = 19534.720484 eV Total energy + Delta-G solvation = -3412.241026 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.57720 -39.30949 -38.29616 -36.20901 -35.38209 -33.61299 -32.45766 -31.38984 -30.14060 -27.52082 -25.41937 -23.98258 -22.94845 -22.43007 -21.91855 -20.57374 -19.75622 -18.74756 -18.03744 -17.24426 -16.82188 -16.33957 -15.72727 -15.46881 -15.28292 -14.79287 -14.63241 -14.04410 -13.46283 -13.21464 -12.89365 -12.67027 -12.64096 -12.53894 -12.35823 -12.12257 -12.03782 -11.80189 -11.05566 -10.96847 -10.90733 -10.74863 -10.49658 -10.39169 -10.34457 -9.93118 -9.66206 -9.38556 -9.10039 -8.39339 -8.21799 -8.08895 -6.63132 -4.27840 0.37671 1.47483 2.62260 2.99695 3.29965 3.36055 3.42811 3.55134 3.65861 3.80697 3.85347 4.17628 4.34559 4.37955 4.50801 4.73728 4.91224 5.02611 5.04126 5.11924 5.18764 5.34796 5.42945 5.50950 5.71629 5.99222 6.04047 6.06266 6.15660 6.23116 6.36692 6.64015 6.74194 6.76167 6.88007 6.99029 7.27300 7.31627 7.56115 7.82447 8.17152 8.32475 8.60585 8.82306 9.41283 10.77794 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019958 B = 0.004264 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.591105 B = 6565.056254 C = 7521.656125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.245 3.755 4 H 0.044 0.956 5 C -0.618 4.618 6 H 0.062 0.938 7 C 0.041 3.959 8 N -0.897 5.897 9 Si 1.038 2.962 10 H -0.283 1.283 11 H -0.268 1.268 12 H -0.279 1.279 13 N -0.687 5.687 14 C 0.537 3.463 15 O -0.532 6.532 16 C -0.018 4.018 17 C -0.184 4.184 18 C 0.520 3.480 19 O -0.551 6.551 20 N -0.602 5.602 21 H 0.409 0.591 22 C 0.186 3.814 23 C -0.130 4.130 24 C -0.176 4.176 25 C -0.160 4.160 26 C -0.199 4.199 27 H 0.032 0.968 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.269 0.731 33 H 0.394 0.606 34 H 0.163 0.837 35 H 0.140 0.860 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.659 5.644 16.862 18.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C 0.142 3.858 4 H 0.062 0.938 5 C -0.656 4.656 6 H 0.080 0.920 7 C -0.166 4.166 8 N -0.530 5.530 9 Si 0.866 3.134 10 H -0.209 1.209 11 H -0.194 1.194 12 H -0.205 1.205 13 N -0.335 5.335 14 C 0.322 3.678 15 O -0.411 6.411 16 C -0.025 4.025 17 C -0.207 4.207 18 C 0.321 3.679 19 O -0.433 6.433 20 N -0.237 5.237 21 H 0.249 0.751 22 C 0.077 3.923 23 C -0.149 4.149 24 C -0.214 4.214 25 C -0.197 4.197 26 C -0.222 4.222 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.228 0.772 34 H 0.181 0.819 35 H 0.158 0.842 36 H 0.113 0.887 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.118 0.882 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.763 5.323 14.504 16.865 hybrid contribution 0.375 0.666 2.393 2.512 sum -6.388 5.990 16.897 19.031 Atomic orbital electron populations 1.21901 0.97329 0.99077 1.01978 1.22369 0.93836 0.99568 1.02035 1.19149 0.96031 0.88684 0.81902 0.93786 1.22064 0.89485 1.49774 1.04242 0.91975 1.25665 0.97513 0.92271 1.01155 1.70887 1.07053 1.40735 1.34289 0.84137 0.75541 0.77819 0.75908 1.20884 1.19421 1.20532 1.46227 1.14013 1.54918 1.18322 1.18234 0.83238 0.79744 0.86612 1.90749 1.50879 1.59377 1.40089 1.20785 0.93667 0.93821 0.94233 1.22677 0.98114 1.02040 0.97917 1.17077 0.84282 0.82125 0.84405 1.90993 1.21430 1.48526 1.82344 1.43544 1.13347 1.49145 1.17667 0.75141 1.19372 0.84851 0.92825 0.95244 1.21328 1.00856 1.00934 0.91738 1.23094 0.99791 1.03917 0.94553 1.23141 1.01191 0.93101 1.02285 1.20447 1.02166 1.07800 0.91762 0.94911 0.93358 0.92910 0.91101 0.92954 0.92092 0.77184 0.81899 0.84209 0.88733 0.87080 0.87133 0.88183 0.83187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 8.53 37.15 0.32 -2.56 16 2 C -0.14 -3.00 5.28 -26.73 -0.14 -3.14 16 3 C 0.25 5.61 1.82 -69.08 -0.13 5.49 16 4 H 0.04 1.10 6.25 -51.93 -0.32 0.78 16 5 C -0.62 -15.97 9.01 -34.44 -0.31 -16.28 16 6 H 0.06 1.66 7.96 -52.48 -0.42 1.24 16 7 C 0.04 1.11 5.32 -17.82 -0.09 1.02 16 8 N -0.90 -25.92 13.70 55.43 0.76 -25.16 16 9 Si 1.04 24.44 26.27 -169.99 -4.47 19.97 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.27 -5.88 5.67 56.52 0.32 -5.56 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 13 N -0.69 -13.09 4.98 -55.69 -0.28 -13.37 16 14 C 0.54 9.99 6.40 -12.05 -0.08 9.91 16 15 O -0.53 -11.51 13.53 5.39 0.07 -11.44 16 16 C -0.02 -0.27 5.91 -104.56 -0.62 -0.89 16 17 C -0.18 -2.82 9.61 -38.53 -0.37 -3.19 16 18 C 0.52 7.53 7.70 -15.31 -0.12 7.41 16 19 O -0.55 -9.66 17.93 4.91 0.09 -9.58 16 20 N -0.60 -6.29 5.18 -11.19 -0.06 -6.35 16 21 H 0.41 3.32 6.60 -40.82 -0.27 3.05 16 22 C 0.19 1.76 6.46 -81.94 -0.53 1.23 16 23 C -0.13 -0.82 6.00 -91.77 -0.55 -1.37 16 24 C -0.18 -0.83 9.94 -26.70 -0.27 -1.10 16 25 C -0.16 -0.84 10.24 -26.70 -0.27 -1.11 16 26 C -0.20 -2.28 9.15 -39.54 -0.36 -2.65 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.95 5.63 -51.93 -0.29 0.65 16 29 H 0.05 1.09 7.88 -51.93 -0.41 0.68 16 30 H 0.07 1.60 4.74 -51.92 -0.25 1.35 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.27 7.66 8.73 -40.82 -0.36 7.31 16 33 H 0.39 6.49 6.63 -40.82 -0.27 6.22 16 34 H 0.16 2.63 7.69 -52.49 -0.40 2.23 16 35 H 0.14 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.41 6.37 -51.93 -0.33 0.08 16 37 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.15 1.49 6.50 -52.49 -0.34 1.14 16 LS Contribution 326.64 15.07 4.92 4.92 Total: -1.00 -32.57 326.64 -7.55 -40.12 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -5.08 Total: 8.11 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -3.52 Total: -7.23 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.42 Total: -44.87 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: 0.16 Total: -21.01 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -4.47 Total: 19.97 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.57 -7.55 -40.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186375612.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.735 kcal (2) G-P(sol) polarization free energy of solvation -32.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds