Wall clock time and date at job start Tue Mar 31 2020 06:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46914 * 2 1 4 4 H 1.08993 * 109.47295 * 305.55300 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55318 * 3 2 1 6 6 H 1.08004 * 120.00150 * 245.60461 * 5 3 2 7 7 C 1.37879 * 120.00154 * 65.60852 * 5 3 2 8 8 N 1.31514 * 120.00263 * 196.28627 * 7 5 3 9 9 Si 1.86803 * 120.00061 * 16.28010 * 7 5 3 10 10 H 1.48491 * 109.47220 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.47391 * 300.00728 * 9 7 5 12 12 H 1.48507 * 109.46974 * 60.00396 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55540 * 3 2 1 14 14 C 1.34771 * 119.99789 * 274.99899 * 13 3 2 15 15 O 1.21470 * 120.00323 * 359.97438 * 14 13 3 16 16 C 1.48464 * 119.99864 * 179.97438 * 14 13 3 17 17 C 1.38289 * 120.53592 * 179.97438 * 16 14 13 18 18 C 1.40963 * 119.01510 * 179.97438 * 17 16 14 19 19 O 1.22008 * 119.96658 * 180.02562 * 18 17 16 20 20 N 1.34596 * 120.06938 * 0.02562 * 18 17 16 21 21 H 0.96998 * 119.44162 * 180.02562 * 20 18 17 22 22 C 1.35698 * 121.12040 * 359.97438 * 20 18 17 23 23 C 1.50708 * 119.50050 * 180.02562 * 22 20 18 24 24 C 1.52997 * 117.49686 * 8.74861 * 23 22 20 25 25 C 1.52989 * 117.49879 * 300.08854 * 23 22 20 26 26 C 1.35264 * 121.00150 * 359.73141 * 22 20 18 27 27 H 1.09005 * 109.47083 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47210 * 299.99485 * 1 2 3 29 29 H 1.08998 * 109.47621 * 60.00436 * 1 2 3 30 30 H 1.09008 * 109.47032 * 240.00580 * 2 1 3 31 31 H 1.09000 * 109.47548 * 120.00343 * 2 1 3 32 32 H 0.97001 * 119.99410 * 354.82986 * 8 7 5 33 33 H 0.97002 * 119.99591 * 94.99593 * 13 3 2 34 34 H 1.08002 * 120.49700 * 0.02562 * 17 16 14 35 35 H 1.08995 * 115.54643 * 154.41523 * 23 22 20 36 36 H 1.09003 * 117.49866 * 359.97438 * 24 23 22 37 37 H 1.08998 * 117.49588 * 145.01923 * 24 23 22 38 38 H 1.09004 * 117.50146 * 214.97893 * 25 23 22 39 39 H 1.09006 * 117.50267 * 359.97438 * 25 23 22 40 40 H 1.07999 * 120.06908 * 180.25806 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4448 -0.1375 6 1 4.1567 1.8042 0.6735 7 6 4.1272 0.9880 -1.2987 8 7 5.4072 0.6862 -1.3142 9 14 3.1039 0.7978 -2.8499 10 1 3.9632 0.2936 -3.9510 11 1 2.0023 -0.1664 -2.6011 12 1 2.5326 2.1146 -3.2306 13 7 1.6638 2.0934 1.2574 14 6 0.4476 2.6599 1.3854 15 8 -0.3365 2.6312 0.4582 16 6 0.0662 3.3190 2.6599 17 6 -1.1785 3.9042 2.8032 18 6 -1.5073 4.5208 4.0275 19 8 -2.6008 5.0420 4.1730 20 7 -0.6162 4.5352 5.0361 21 1 -0.8521 4.9616 5.8747 22 6 0.6064 3.9623 4.9000 23 6 1.5758 3.9991 6.0533 24 6 1.0538 4.5068 7.3989 25 6 2.0061 5.3730 6.5707 26 6 0.9660 3.3534 3.7469 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 5.9548 0.8552 -0.5316 33 1 2.2901 2.1166 1.9978 34 1 -1.8886 3.8884 1.9896 35 1 2.3171 3.2002 6.0700 36 1 0.0094 4.8146 7.4498 37 1 1.4520 4.0422 8.3008 38 1 3.0305 5.4780 6.9283 39 1 1.5885 6.2504 6.0768 40 1 1.9414 2.8986 3.6564 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186375612.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:36 Heat of formation + Delta-G solvation = -45.078494 kcal Electronic energy + Delta-G solvation = -22947.945628 eV Core-core repulsion = 19534.720484 eV Total energy + Delta-G solvation = -3413.225143 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.61840 -40.83695 -39.12667 -37.33094 -36.91070 -34.81543 -34.37818 -33.00658 -31.12909 -29.31169 -26.68595 -24.94190 -24.24663 -23.34576 -22.92993 -21.93027 -21.37796 -19.90150 -19.68054 -18.37729 -18.21961 -17.23649 -17.13554 -16.78321 -16.32039 -16.15047 -15.69595 -15.41078 -15.12575 -14.53465 -14.48213 -14.22502 -14.10913 -13.68452 -13.62096 -13.46370 -12.94922 -12.69508 -12.49347 -12.47984 -12.30347 -11.80190 -11.67530 -11.56917 -11.49980 -11.43735 -11.36700 -11.10767 -10.89236 -10.46161 -9.89349 -9.11249 -8.77100 -6.42042 -0.74268 0.45257 1.47586 1.52385 1.66791 1.70273 1.74198 2.19676 2.42950 2.50838 2.88583 3.03647 3.10909 3.51984 3.65562 3.79985 3.93191 3.97797 4.08764 4.12500 4.32718 4.40628 4.52727 4.68762 4.71397 4.85690 4.91823 4.99358 5.04393 5.06638 5.12007 5.16479 5.20051 5.28765 5.47744 5.54993 5.59043 5.66972 5.72337 6.03740 6.54661 6.71027 6.75439 7.22458 7.34838 8.63400 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019958 B = 0.004264 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.591105 B = 6565.056254 C = 7521.656125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.136 4.136 3 C 0.249 3.751 4 H 0.024 0.976 5 C -0.610 4.610 6 H 0.047 0.953 7 C -0.001 4.001 8 N -0.928 5.928 9 Si 1.065 2.935 10 H -0.284 1.284 11 H -0.244 1.244 12 H -0.276 1.276 13 N -0.683 5.683 14 C 0.538 3.462 15 O -0.565 6.565 16 C -0.008 4.008 17 C -0.211 4.211 18 C 0.522 3.478 19 O -0.589 6.589 20 N -0.584 5.584 21 H 0.424 0.576 22 C 0.218 3.782 23 C -0.144 4.144 24 C -0.165 4.165 25 C -0.156 4.156 26 C -0.215 4.215 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.039 0.961 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.260 0.740 33 H 0.407 0.593 34 H 0.144 0.856 35 H 0.159 0.841 36 H 0.098 0.902 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.094 0.906 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.588 5.592 19.267 20.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.175 4.175 3 C 0.144 3.856 4 H 0.042 0.958 5 C -0.648 4.648 6 H 0.065 0.935 7 C -0.202 4.202 8 N -0.563 5.563 9 Si 0.888 3.112 10 H -0.210 1.210 11 H -0.168 1.168 12 H -0.202 1.202 13 N -0.332 5.332 14 C 0.324 3.676 15 O -0.446 6.446 16 C -0.015 4.015 17 C -0.235 4.235 18 C 0.323 3.677 19 O -0.475 6.475 20 N -0.217 5.217 21 H 0.266 0.734 22 C 0.107 3.893 23 C -0.163 4.163 24 C -0.202 4.202 25 C -0.193 4.193 26 C -0.237 4.237 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.244 0.756 34 H 0.162 0.838 35 H 0.176 0.824 36 H 0.117 0.883 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.113 0.887 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -6.680 5.279 16.970 18.986 hybrid contribution 0.437 0.752 1.797 1.997 sum -6.243 6.031 18.768 20.678 Atomic orbital electron populations 1.21794 0.95829 1.00484 1.01295 1.22262 0.95073 0.98178 1.01952 1.18873 0.93902 0.89807 0.82991 0.95837 1.22241 0.91084 1.48109 1.03377 0.93485 1.26657 0.97651 0.92184 1.03707 1.70980 1.08003 1.43186 1.34122 0.83793 0.75306 0.78594 0.73486 1.20994 1.16809 1.20199 1.45993 1.14721 1.54938 1.17595 1.18673 0.82421 0.79025 0.87485 1.90731 1.51726 1.60422 1.41676 1.20505 0.94132 0.93430 0.93444 1.22479 0.98315 1.04255 0.98404 1.16852 0.84230 0.81847 0.84737 1.90969 1.23062 1.50425 1.83041 1.43409 1.13031 1.47924 1.17383 0.73361 1.19849 0.84298 0.89490 0.95620 1.21494 1.00896 1.02619 0.91286 1.23255 1.00068 1.02750 0.94103 1.23250 1.02330 0.91931 1.01804 1.20578 1.02482 1.09275 0.91374 0.92385 0.93545 0.94150 0.92060 0.92144 0.93070 0.75620 0.83809 0.82369 0.88349 0.85227 0.85600 0.88721 0.81313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 8.53 71.98 0.61 -4.60 16 2 C -0.14 -5.68 5.28 30.59 0.16 -5.52 16 3 C 0.25 11.25 1.82 44.25 0.08 11.33 16 4 H 0.02 1.19 6.25 -2.39 -0.01 1.17 16 5 C -0.61 -31.51 9.01 25.60 0.23 -31.28 16 6 H 0.05 2.52 7.96 -2.91 -0.02 2.50 16 7 C 0.00 -0.04 5.32 84.66 0.45 0.41 16 8 N -0.93 -54.21 13.70 21.45 0.29 -53.92 16 9 Si 1.07 49.04 26.27 68.60 1.80 50.84 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.24 -10.19 5.67 99.48 0.56 -9.62 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 13 N -0.68 -25.53 4.98 -448.40 -2.24 -27.77 16 14 C 0.54 19.87 6.40 86.97 0.56 20.43 16 15 O -0.57 -24.74 13.53 -3.62 -0.05 -24.79 16 16 C -0.01 -0.24 5.91 -19.82 -0.12 -0.35 16 17 C -0.21 -6.56 9.61 22.95 0.22 -6.34 16 18 C 0.52 14.88 7.70 84.94 0.65 15.54 16 19 O -0.59 -20.85 17.93 -5.34 -0.10 -20.94 16 20 N -0.58 -10.96 5.18 -307.50 -1.59 -12.55 16 21 H 0.42 5.73 6.60 -92.71 -0.61 5.12 16 22 C 0.22 3.50 6.46 41.28 0.27 3.76 16 23 C -0.14 -1.24 6.00 -11.54 -0.07 -1.31 16 24 C -0.16 -0.84 9.94 30.62 0.30 -0.54 16 25 C -0.16 -1.02 10.24 30.61 0.31 -0.70 16 26 C -0.21 -4.48 9.15 22.30 0.20 -4.27 16 27 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 28 H 0.05 1.77 5.63 -2.39 -0.01 1.75 16 29 H 0.04 1.62 7.88 -2.39 -0.02 1.60 16 30 H 0.06 2.67 4.74 -2.38 -0.01 2.66 16 31 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.26 15.10 8.73 -92.71 -0.81 14.29 16 33 H 0.41 12.87 6.63 -92.71 -0.61 12.25 16 34 H 0.14 4.95 7.69 -2.91 -0.02 4.93 16 35 H 0.16 0.90 8.14 -2.39 -0.02 0.89 16 36 H 0.10 0.45 6.37 -2.39 -0.02 0.44 16 37 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.17 2.86 6.50 -2.91 -0.02 2.84 16 Total: -1.00 -71.82 326.64 1.68 -70.14 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -0.31 Total: 22.43 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 3.87 Total: -3.44 kcal Atomic # 7 Polarization: -90.70 SS G_CDS: -3.53 Total: -94.24 kcal Atomic # 8 Polarization: -45.59 SS G_CDS: -0.14 Total: -45.73 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 1.80 Total: 50.84 kcal Total: -71.82 1.68 -70.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186375612.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.058 kcal (2) G-P(sol) polarization free energy of solvation -71.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds