Wall clock time and date at job start Tue Mar 31 2020 06:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47475 * 2 1 4 4 H 1.08998 * 109.47119 * 54.99989 * 3 2 1 5 5 C 1.50695 * 109.47103 * 175.00470 * 3 2 1 6 6 H 1.07995 * 120.00588 * 120.00027 * 5 3 2 7 7 C 1.37880 * 119.99879 * 299.99654 * 5 3 2 8 8 N 1.31519 * 119.99605 * 0.02562 * 7 5 3 9 9 Si 1.86791 * 120.00266 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47597 * 89.99836 * 9 7 5 11 11 H 1.48501 * 109.47436 * 209.99970 * 9 7 5 12 12 H 1.48501 * 109.47177 * 329.99571 * 9 7 5 13 13 N 1.46504 * 109.46953 * 295.00343 * 3 2 1 14 14 C 1.34770 * 120.00569 * 84.99861 * 13 3 2 15 15 O 1.21289 * 119.99697 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00305 * 179.97438 * 14 13 3 17 17 C 1.50701 * 109.47227 * 180.02562 * 16 14 13 18 18 C 1.37972 * 120.07546 * 98.60902 * 17 16 14 19 19 C 1.38340 * 120.14990 * 180.27773 * 18 17 16 20 20 C 1.38391 * 120.28708 * 359.48713 * 19 18 17 21 21 C 1.37938 * 120.14146 * 0.50943 * 20 19 18 22 22 C 1.39560 * 120.07504 * 278.63026 * 17 16 14 23 23 C 1.47846 * 120.14395 * 359.95593 * 22 17 16 24 24 N 1.34770 * 120.00210 * 185.75979 * 23 22 17 25 25 O 1.21557 * 119.99805 * 5.75633 * 23 22 17 26 26 H 1.09006 * 109.46832 * 59.99593 * 1 2 3 27 27 H 1.08998 * 109.47430 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47035 * 300.00641 * 1 2 3 29 29 H 1.09005 * 109.46483 * 239.99828 * 2 1 3 30 30 H 1.08997 * 109.47066 * 120.00412 * 2 1 3 31 31 H 0.97006 * 119.99686 * 180.02562 * 8 7 5 32 32 H 0.97003 * 119.99563 * 264.99608 * 13 3 2 33 33 H 1.09005 * 109.46771 * 60.00709 * 16 14 13 34 34 H 1.08996 * 109.47334 * 300.00071 * 16 14 13 35 35 H 1.08003 * 119.92447 * 359.97438 * 18 17 16 36 36 H 1.07994 * 119.85549 * 179.72138 * 19 18 17 37 37 H 1.07995 * 119.92211 * 180.27973 * 20 19 18 38 38 H 1.08004 * 120.06608 * 179.76879 * 21 20 19 39 39 H 0.97003 * 120.00497 * 359.97438 * 24 23 22 40 40 H 0.96999 * 120.00307 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1237 6 1 4.1473 1.8886 -0.6524 7 6 4.1433 0.8782 1.2279 8 7 3.4062 0.3365 2.1728 9 14 6.0049 0.8809 1.3817 10 1 6.4419 2.1138 2.0847 11 1 6.4395 -0.3102 2.1548 12 1 6.6135 0.8411 0.0277 13 7 1.6525 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3392 2.6328 -0.4341 16 6 0.0368 3.3386 -2.6545 17 6 -1.3607 3.8871 -2.5228 18 6 -1.5551 5.2215 -2.2308 19 6 -2.8372 5.7253 -2.1039 20 6 -3.9327 4.8981 -2.2791 21 6 -3.7522 3.5622 -2.5713 22 6 -2.4611 3.0463 -2.6954 23 6 -2.2603 1.6155 -3.0090 24 7 -3.3203 0.8318 -3.2894 25 8 -1.1391 1.1459 -3.0138 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8293 -0.0614 2.9498 32 1 2.2720 2.1231 -1.9978 33 1 0.0680 2.6145 -3.4686 34 1 0.7282 4.1541 -2.8667 35 1 -0.7043 5.8731 -2.0962 36 1 -2.9838 6.7696 -1.8708 37 1 -4.9311 5.2986 -2.1831 38 1 -4.6080 2.9169 -2.7041 39 1 -4.2150 1.2064 -3.2853 40 1 -3.1885 -0.1068 -3.4955 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191006378.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:38 Heat of formation + Delta-G solvation = -54.110314 kcal Electronic energy + Delta-G solvation = -23628.926296 eV Core-core repulsion = 20215.309504 eV Total energy + Delta-G solvation = -3413.616792 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.39846 -38.51326 -37.99615 -34.91235 -33.92649 -32.47987 -32.14311 -30.89688 -30.65790 -27.81866 -26.38920 -23.94494 -22.92798 -21.92835 -20.65775 -19.96316 -19.07309 -17.95613 -16.90921 -16.78731 -15.89610 -15.55188 -15.24196 -15.00510 -14.96677 -14.54238 -14.18148 -13.91112 -13.40523 -13.09425 -12.88323 -12.50249 -12.35875 -12.14603 -11.74204 -11.48733 -11.22191 -11.09898 -11.02592 -10.84538 -10.70941 -10.20163 -9.99010 -9.69587 -9.55782 -9.37396 -9.02805 -8.93830 -8.87277 -8.54425 -8.35346 -7.56968 -6.01551 -4.10269 0.89492 1.34072 2.96425 3.30464 3.36755 3.39207 3.52836 3.76035 3.83933 4.35114 4.59921 4.71945 4.78563 4.82683 4.99996 5.29078 5.30776 5.42895 5.60702 5.74587 5.88338 5.91089 6.09499 6.23386 6.38464 6.55741 6.59626 6.71499 6.81554 6.85552 6.92180 7.31027 7.34930 7.40648 7.58891 7.70720 7.77141 7.92583 8.06321 8.32764 8.36667 8.88530 8.94979 9.39854 9.58856 11.03655 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024975 B = 0.004366 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.872587 B = 6411.373467 C = 6965.281799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C 0.273 3.727 4 H 0.046 0.954 5 C -0.531 4.531 6 H 0.060 0.940 7 C 0.065 3.935 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.709 5.709 14 C 0.526 3.474 15 O -0.552 6.552 16 C -0.119 4.119 17 C 0.010 3.990 18 C -0.120 4.120 19 C -0.092 4.092 20 C -0.136 4.136 21 C -0.088 4.088 22 C -0.126 4.126 23 C 0.560 3.440 24 N -0.856 5.856 25 O -0.516 6.516 26 H 0.060 0.940 27 H 0.014 0.986 28 H 0.042 0.958 29 H 0.029 0.971 30 H 0.094 0.906 31 H 0.263 0.737 32 H 0.386 0.614 33 H 0.120 0.880 34 H 0.087 0.913 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.396 0.604 40 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.720 7.108 -12.716 20.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.162 4.162 3 C 0.171 3.829 4 H 0.063 0.937 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.138 4.138 8 N -0.521 5.521 9 Si 0.727 3.273 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.356 5.356 14 C 0.311 3.689 15 O -0.432 6.432 16 C -0.158 4.158 17 C 0.009 3.991 18 C -0.138 4.138 19 C -0.111 4.111 20 C -0.154 4.154 21 C -0.106 4.106 22 C -0.129 4.129 23 C 0.347 3.653 24 N -0.420 5.420 25 O -0.392 6.392 26 H 0.078 0.922 27 H 0.033 0.967 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.218 0.782 33 H 0.137 0.863 34 H 0.105 0.895 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.225 0.775 40 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -14.432 6.826 -11.791 19.847 hybrid contribution 0.783 -0.291 -0.202 0.860 sum -13.648 6.535 -11.993 19.308 Atomic orbital electron populations 1.21910 0.98354 0.97686 1.01995 1.21864 0.92781 0.99793 1.01753 1.18698 0.93807 0.89208 0.81168 0.93655 1.21280 0.90977 1.38616 1.06073 0.92187 1.24890 0.98427 0.94942 0.95496 1.69922 1.34959 1.37861 1.09335 0.86482 0.85142 0.77529 0.78118 1.20659 1.21160 1.19885 1.46353 1.14771 1.56299 1.18219 1.19765 0.82408 0.78773 0.87937 1.90643 1.51323 1.60484 1.40708 1.20998 0.92934 1.01547 1.00355 1.19489 0.93977 0.92667 0.92978 1.21056 0.97606 0.94801 1.00329 1.21284 0.92476 0.99876 0.97428 1.21002 0.98991 0.93587 1.01840 1.21171 0.95434 0.95753 0.98283 1.19658 0.93893 0.93228 1.06122 1.18288 0.84665 0.86338 0.76053 1.43735 1.09550 1.13901 1.74827 1.90823 1.22993 1.74953 1.50460 0.92154 0.96673 0.93904 0.95261 0.88818 0.92738 0.78243 0.86266 0.89484 0.85375 0.85700 0.85718 0.85970 0.77461 0.76590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 8.52 37.16 0.32 -3.23 16 2 C -0.12 -3.26 5.45 -26.73 -0.15 -3.41 16 3 C 0.27 7.33 2.24 -69.08 -0.15 7.17 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -14.68 8.73 -34.44 -0.30 -14.98 16 6 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -25.75 11.29 55.43 0.63 -25.12 16 9 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.71 -16.00 5.02 -54.94 -0.28 -16.28 16 14 C 0.53 11.26 5.11 -10.99 -0.06 11.21 16 15 O -0.55 -13.67 13.13 5.55 0.07 -13.59 16 16 C -0.12 -1.94 5.12 -29.04 -0.15 -2.09 16 17 C 0.01 0.16 4.43 -104.23 -0.46 -0.30 16 18 C -0.12 -1.55 9.66 -39.64 -0.38 -1.93 16 19 C -0.09 -0.99 10.04 -39.49 -0.40 -1.39 16 20 C -0.14 -1.36 10.03 -39.64 -0.40 -1.76 16 21 C -0.09 -0.95 9.53 -39.19 -0.37 -1.33 16 22 C -0.13 -1.79 5.82 -104.97 -0.61 -2.40 16 23 C 0.56 8.33 7.98 -12.33 -0.10 8.23 16 24 N -0.86 -8.58 8.82 30.53 0.27 -8.31 16 25 O -0.52 -9.58 11.71 5.32 0.06 -9.52 16 26 H 0.06 1.49 4.12 -51.93 -0.21 1.27 16 27 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.04 1.12 7.85 -51.93 -0.41 0.72 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 2.70 5.95 -51.93 -0.31 2.39 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.39 7.74 8.54 -40.82 -0.35 7.39 16 33 H 0.12 1.94 5.99 -51.93 -0.31 1.63 16 34 H 0.09 1.18 8.02 -51.93 -0.42 0.76 16 35 H 0.13 1.46 8.04 -52.48 -0.42 1.04 16 36 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 37 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.12 0.90 6.45 -52.48 -0.34 0.56 16 39 H 0.40 2.66 6.90 -40.82 -0.28 2.38 16 40 H 0.40 3.63 8.93 -40.82 -0.36 3.26 16 LS Contribution 325.59 15.07 4.91 4.91 Total: -1.00 -35.13 325.59 -7.70 -42.83 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -5.04 Total: 13.30 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -3.30 Total: -4.49 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.62 Total: -49.71 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: 0.14 Total: -23.11 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.13 -7.70 -42.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191006378.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.276 kcal (2) G-P(sol) polarization free energy of solvation -35.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds