Wall clock time and date at job start Tue Mar 31 2020 06:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47475 * 2 1 4 4 H 1.08998 * 109.47119 * 54.99989 * 3 2 1 5 5 C 1.50695 * 109.47103 * 175.00470 * 3 2 1 6 6 H 1.07995 * 120.00588 * 120.00027 * 5 3 2 7 7 C 1.37880 * 119.99879 * 299.99654 * 5 3 2 8 8 N 1.31519 * 119.99605 * 0.02562 * 7 5 3 9 9 Si 1.86791 * 120.00266 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47597 * 89.99836 * 9 7 5 11 11 H 1.48501 * 109.47436 * 209.99970 * 9 7 5 12 12 H 1.48501 * 109.47177 * 329.99571 * 9 7 5 13 13 N 1.46504 * 109.46953 * 295.00343 * 3 2 1 14 14 C 1.34770 * 120.00569 * 84.99861 * 13 3 2 15 15 O 1.21289 * 119.99697 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00305 * 179.97438 * 14 13 3 17 17 C 1.50701 * 109.47227 * 180.02562 * 16 14 13 18 18 C 1.37972 * 120.07546 * 98.60902 * 17 16 14 19 19 C 1.38340 * 120.14990 * 180.27773 * 18 17 16 20 20 C 1.38391 * 120.28708 * 359.48713 * 19 18 17 21 21 C 1.37938 * 120.14146 * 0.50943 * 20 19 18 22 22 C 1.39560 * 120.07504 * 278.63026 * 17 16 14 23 23 C 1.47846 * 120.14395 * 359.95593 * 22 17 16 24 24 N 1.34770 * 120.00210 * 185.75979 * 23 22 17 25 25 O 1.21557 * 119.99805 * 5.75633 * 23 22 17 26 26 H 1.09006 * 109.46832 * 59.99593 * 1 2 3 27 27 H 1.08998 * 109.47430 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47035 * 300.00641 * 1 2 3 29 29 H 1.09005 * 109.46483 * 239.99828 * 2 1 3 30 30 H 1.08997 * 109.47066 * 120.00412 * 2 1 3 31 31 H 0.97006 * 119.99686 * 180.02562 * 8 7 5 32 32 H 0.97003 * 119.99563 * 264.99608 * 13 3 2 33 33 H 1.09005 * 109.46771 * 60.00709 * 16 14 13 34 34 H 1.08996 * 109.47334 * 300.00071 * 16 14 13 35 35 H 1.08003 * 119.92447 * 359.97438 * 18 17 16 36 36 H 1.07994 * 119.85549 * 179.72138 * 19 18 17 37 37 H 1.07995 * 119.92211 * 180.27973 * 20 19 18 38 38 H 1.08004 * 120.06608 * 179.76879 * 21 20 19 39 39 H 0.97003 * 120.00497 * 359.97438 * 24 23 22 40 40 H 0.96999 * 120.00307 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1237 6 1 4.1473 1.8886 -0.6524 7 6 4.1433 0.8782 1.2279 8 7 3.4062 0.3365 2.1728 9 14 6.0049 0.8809 1.3817 10 1 6.4419 2.1138 2.0847 11 1 6.4395 -0.3102 2.1548 12 1 6.6135 0.8411 0.0277 13 7 1.6525 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3392 2.6328 -0.4341 16 6 0.0368 3.3386 -2.6545 17 6 -1.3607 3.8871 -2.5228 18 6 -1.5551 5.2215 -2.2308 19 6 -2.8372 5.7253 -2.1039 20 6 -3.9327 4.8981 -2.2791 21 6 -3.7522 3.5622 -2.5713 22 6 -2.4611 3.0463 -2.6954 23 6 -2.2603 1.6155 -3.0090 24 7 -3.3203 0.8318 -3.2894 25 8 -1.1391 1.1459 -3.0138 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8293 -0.0614 2.9498 32 1 2.2720 2.1231 -1.9978 33 1 0.0680 2.6145 -3.4686 34 1 0.7282 4.1541 -2.8667 35 1 -0.7043 5.8731 -2.0962 36 1 -2.9838 6.7696 -1.8708 37 1 -4.9311 5.2986 -2.1831 38 1 -4.6080 2.9169 -2.7041 39 1 -4.2150 1.2064 -3.2853 40 1 -3.1885 -0.1068 -3.4955 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191006378.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:38 Heat of formation + Delta-G solvation = -80.563154 kcal Electronic energy + Delta-G solvation = -23630.073377 eV Core-core repulsion = 20215.309504 eV Total energy + Delta-G solvation = -3414.763874 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.51753 -40.14658 -39.01593 -36.87080 -34.98653 -34.23152 -33.62071 -32.56961 -31.77155 -29.41629 -28.09740 -25.09132 -24.77371 -23.08311 -21.99131 -21.44928 -20.95060 -19.07509 -18.63738 -17.76427 -17.40968 -17.17198 -16.68796 -16.38751 -16.03581 -15.88190 -15.83503 -15.25837 -14.69488 -14.61171 -14.39566 -13.98760 -13.83758 -13.53973 -13.26477 -13.14886 -12.90317 -12.74054 -12.63597 -12.62137 -12.14633 -12.05844 -11.95806 -11.54441 -11.04138 -10.77665 -10.61418 -10.59780 -10.45760 -9.85547 -9.64742 -9.51126 -8.14917 -6.32668 -0.04446 0.44058 1.43574 1.44776 1.55662 1.92567 2.12508 2.38362 2.61715 2.72691 3.09780 3.14228 3.76247 3.87503 3.97943 4.18679 4.31882 4.40965 4.48716 4.58292 4.60000 4.63075 4.73023 4.80886 4.96098 5.07061 5.14096 5.27473 5.36632 5.47553 5.53621 5.59074 5.59502 5.69136 5.81350 5.94582 5.97446 6.02080 6.19102 6.49183 6.76422 7.12373 7.35132 7.38494 7.73604 8.90691 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024975 B = 0.004366 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.872587 B = 6411.373467 C = 6965.281799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.115 4.115 3 C 0.283 3.717 4 H -0.005 1.005 5 C -0.549 4.549 6 H 0.070 0.930 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.973 3.027 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.261 1.261 13 N -0.711 5.711 14 C 0.524 3.476 15 O -0.588 6.588 16 C -0.105 4.105 17 C -0.024 4.024 18 C -0.136 4.136 19 C -0.092 4.092 20 C -0.131 4.131 21 C -0.086 4.086 22 C -0.151 4.151 23 C 0.550 3.450 24 N -0.834 5.834 25 O -0.565 6.565 26 H 0.064 0.936 27 H 0.033 0.967 28 H 0.019 0.981 29 H 0.031 0.969 30 H 0.068 0.932 31 H 0.264 0.736 32 H 0.398 0.602 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.135 0.865 36 H 0.155 0.845 37 H 0.163 0.837 38 H 0.157 0.843 39 H 0.414 0.586 40 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.836 8.277 -14.035 22.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.154 4.154 3 C 0.179 3.821 4 H 0.012 0.988 5 C -0.587 4.587 6 H 0.088 0.912 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.797 3.203 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.185 1.185 13 N -0.359 5.359 14 C 0.312 3.688 15 O -0.470 6.470 16 C -0.144 4.144 17 C -0.026 4.026 18 C -0.154 4.154 19 C -0.110 4.110 20 C -0.148 4.148 21 C -0.105 4.105 22 C -0.154 4.154 23 C 0.337 3.663 24 N -0.399 5.399 25 O -0.446 6.446 26 H 0.083 0.917 27 H 0.052 0.948 28 H 0.038 0.962 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.232 0.768 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.153 0.847 36 H 0.173 0.827 37 H 0.180 0.820 38 H 0.174 0.826 39 H 0.246 0.754 40 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -15.603 8.006 -13.160 21.926 hybrid contribution 0.965 -0.607 0.212 1.159 sum -14.639 7.399 -12.948 20.897 Atomic orbital electron populations 1.21748 0.97226 0.98492 1.01009 1.21715 0.93687 0.99533 1.00462 1.18260 0.93503 0.88821 0.81471 0.98761 1.21611 0.91475 1.38907 1.06692 0.91154 1.25821 1.03561 0.94279 0.94956 1.70077 1.37128 1.38449 1.09872 0.85334 0.78819 0.77525 0.78575 1.20149 1.20870 1.18529 1.46194 1.15903 1.56603 1.17247 1.20620 0.81170 0.77799 0.89257 1.90606 1.52146 1.61670 1.42569 1.20855 0.94905 1.01758 0.96892 1.19574 0.93388 0.93990 0.95602 1.21282 0.99250 0.94189 1.00641 1.21708 0.91715 1.01557 0.95998 1.21507 1.00555 0.93033 0.99727 1.21594 0.95062 0.96891 0.96910 1.19839 0.95238 0.92856 1.07476 1.18624 0.84811 0.87131 0.75708 1.43539 1.09540 1.13880 1.72897 1.90782 1.24921 1.75877 1.53003 0.91718 0.94833 0.96218 0.95020 0.91315 0.92651 0.76783 0.86313 0.87019 0.84675 0.82727 0.81968 0.82562 0.75357 0.75880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.57 8.52 71.98 0.61 -5.96 16 2 C -0.11 -6.32 5.45 30.59 0.17 -6.15 16 3 C 0.28 15.80 2.24 44.24 0.10 15.90 16 4 H -0.01 -0.36 7.58 -2.39 -0.02 -0.38 16 5 C -0.55 -30.90 8.73 25.60 0.22 -30.68 16 6 H 0.07 3.72 7.74 -2.91 -0.02 3.69 16 7 C 0.01 0.76 5.29 84.65 0.45 1.21 16 8 N -0.92 -54.96 11.29 21.45 0.24 -54.72 16 9 Si 0.97 43.84 29.54 68.60 2.03 45.86 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 13 N -0.71 -33.06 5.02 -446.11 -2.24 -35.30 16 14 C 0.52 23.08 5.11 87.66 0.45 23.52 16 15 O -0.59 -30.25 13.13 -3.06 -0.04 -30.29 16 16 C -0.10 -3.46 5.12 29.10 0.15 -3.31 16 17 C -0.02 -0.72 4.43 -19.61 -0.09 -0.81 16 18 C -0.14 -3.34 9.66 22.23 0.21 -3.13 16 19 C -0.09 -1.70 10.04 22.33 0.22 -1.48 16 20 C -0.13 -2.11 10.03 22.23 0.22 -1.89 16 21 C -0.09 -1.63 9.53 22.52 0.21 -1.41 16 22 C -0.15 -4.14 5.82 -20.09 -0.12 -4.26 16 23 C 0.55 16.15 7.98 86.79 0.69 16.84 16 24 N -0.83 -15.52 8.82 -175.61 -1.55 -17.07 16 25 O -0.57 -21.39 11.71 -3.89 -0.05 -21.43 16 26 H 0.06 3.29 4.12 -2.38 -0.01 3.28 16 27 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.02 1.05 7.85 -2.39 -0.02 1.03 16 29 H 0.03 1.67 8.14 -2.38 -0.02 1.66 16 30 H 0.07 4.13 5.95 -2.39 -0.01 4.11 16 31 H 0.26 14.94 8.31 -92.70 -0.77 14.17 16 32 H 0.40 16.26 8.54 -92.71 -0.79 15.47 16 33 H 0.12 3.95 5.99 -2.38 -0.01 3.93 16 34 H 0.11 2.99 8.02 -2.39 -0.02 2.97 16 35 H 0.14 2.96 8.04 -2.91 -0.02 2.93 16 36 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 37 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.16 1.69 6.45 -2.91 -0.02 1.67 16 39 H 0.41 4.49 6.90 -92.71 -0.64 3.85 16 40 H 0.41 6.87 8.93 -92.71 -0.83 6.05 16 Total: -1.00 -79.84 325.59 0.75 -79.09 By element: Atomic # 1 Polarization: 36.59 SS G_CDS: -1.15 Total: 35.44 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 3.51 Total: -1.59 kcal Atomic # 7 Polarization: -103.53 SS G_CDS: -3.55 Total: -107.08 kcal Atomic # 8 Polarization: -51.64 SS G_CDS: -0.09 Total: -51.72 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -79.84 0.75 -79.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191006378.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.471 kcal (2) G-P(sol) polarization free energy of solvation -79.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds