Wall clock time and date at job start Tue Mar 31 2020 06:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46812 * 2 1 4 4 C 1.50695 * 109.47197 * 119.99993 * 2 1 3 5 5 O 1.21288 * 119.99814 * 359.97438 * 4 2 1 6 6 N 1.34778 * 119.99838 * 180.02562 * 4 2 1 7 7 C 1.39926 * 119.99779 * 185.26447 * 6 4 2 8 8 C 1.38873 * 120.06782 * 33.29159 * 7 6 4 9 9 C 1.38112 * 119.93071 * 180.02562 * 8 7 6 10 10 C 1.38283 * 120.07070 * 0.02562 * 9 8 7 11 11 C 1.50698 * 119.93289 * 179.97438 * 10 9 8 12 12 N 1.46504 * 109.46930 * 90.00349 * 11 10 9 13 13 C 1.34778 * 119.99815 * 180.02562 * 12 11 10 14 14 O 1.21683 * 120.00095 * 359.97438 * 13 12 11 15 15 C 1.46382 * 119.99449 * 179.97438 * 13 12 11 16 16 H 1.07999 * 120.00422 * 0.02562 * 15 13 12 17 17 C 1.40053 * 119.99282 * 179.97438 * 15 13 12 18 18 N 1.30664 * 120.00366 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 119.99670 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47227 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47133 * 120.00127 * 19 17 15 22 22 H 1.48497 * 109.47249 * 240.00249 * 19 17 15 23 23 C 1.38285 * 120.13800 * 0.25319 * 10 9 8 24 24 C 1.38115 * 120.07332 * 359.49252 * 23 10 9 25 25 H 1.08993 * 109.47384 * 300.00082 * 1 2 3 26 26 H 1.09007 * 109.47425 * 60.00122 * 1 2 3 27 27 H 1.08998 * 109.47051 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47141 * 240.00390 * 2 1 3 29 29 H 1.09001 * 109.46534 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.46720 * 299.99621 * 3 2 1 31 31 H 1.08995 * 109.46949 * 60.00272 * 3 2 1 32 32 H 0.96998 * 120.00163 * 5.26537 * 6 4 2 33 33 H 1.07997 * 120.03932 * 0.02562 * 8 7 6 34 34 H 1.08002 * 119.97035 * 179.97438 * 9 8 7 35 35 H 1.08999 * 109.47113 * 209.99457 * 11 10 9 36 36 H 1.08995 * 109.47129 * 330.00622 * 11 10 9 37 37 H 0.97005 * 120.00028 * 359.97438 * 12 11 10 38 38 H 0.97005 * 120.00272 * 179.97438 * 18 17 15 39 39 H 1.08005 * 119.96458 * 179.74681 * 23 10 9 40 40 H 1.07988 * 120.03915 * 180.25800 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.2441 -1.1709 2.0290 6 7 3.3574 -0.8330 1.4439 7 6 3.8248 -1.5864 2.5264 8 6 3.1218 -2.7068 2.9496 9 6 3.5855 -3.4481 4.0187 10 6 4.7481 -3.0754 4.6681 11 6 5.2508 -3.8861 5.8347 12 7 6.1490 -4.9365 5.3484 13 6 6.7218 -5.7901 6.2201 14 8 6.4933 -5.6881 7.4109 15 6 7.6187 -6.8399 5.7341 16 1 7.8218 -6.9301 4.6772 17 6 8.2143 -7.7266 6.6399 18 7 7.9689 -7.6171 7.9186 19 14 9.3584 -9.0667 6.0198 20 1 9.4696 -8.9778 4.5416 21 1 10.7016 -8.8915 6.6282 22 1 8.8139 -10.3959 6.3966 23 6 5.4473 -1.9569 4.2528 24 6 4.9918 -1.2144 3.1810 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.9871 -0.3991 0.8472 33 1 2.2135 -2.9983 2.4432 34 1 3.0390 -4.3193 4.3486 35 1 5.7911 -3.2361 6.5229 36 1 4.4061 -4.3411 6.3518 37 1 6.3309 -5.0180 4.3991 38 1 8.3812 -8.2315 8.5460 39 1 6.3528 -1.6660 4.7645 40 1 5.5405 -0.3435 2.8545 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219662786.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:00 Heat of formation + Delta-G solvation = -62.560851 kcal Electronic energy + Delta-G solvation = -21789.372773 eV Core-core repulsion = 18375.389538 eV Total energy + Delta-G solvation = -3413.983235 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.81914 -38.90686 -37.12549 -35.20503 -34.94022 -33.11122 -32.22677 -30.85525 -29.83271 -27.58303 -26.70216 -25.12040 -23.54817 -22.84702 -21.11833 -20.10642 -19.61501 -17.96180 -17.37167 -17.29656 -15.84311 -15.46641 -15.20785 -15.14589 -14.71903 -14.28975 -14.04307 -13.95600 -13.52115 -13.43626 -13.22429 -12.92523 -12.74778 -12.59752 -12.32726 -12.23681 -11.64253 -11.53132 -11.45438 -11.25395 -11.11018 -11.00969 -10.81302 -10.44299 -10.36480 -10.17489 -9.92005 -8.84033 -8.82086 -8.13545 -7.52938 -7.46668 -6.15869 -4.61255 1.26114 1.52048 2.36628 2.79066 3.14670 3.22718 3.27353 3.84391 4.14710 4.19455 4.40750 4.48132 4.61600 4.84693 4.97044 5.05962 5.08469 5.14422 5.21994 5.28415 5.39799 5.46471 5.52578 5.53994 5.58831 5.67415 5.81441 5.86591 6.08550 6.26411 6.29213 6.35625 6.49891 6.53971 6.93282 7.09040 7.15680 7.46097 7.86602 7.96644 8.12098 8.36439 9.05119 9.57275 10.62689 10.81327 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.037503 B = 0.002527 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.431674 B =11076.960573 C =11194.483031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.114 4.114 3 C -0.146 4.146 4 C 0.513 3.487 5 O -0.517 6.517 6 N -0.673 5.673 7 C 0.135 3.865 8 C -0.122 4.122 9 C -0.085 4.085 10 C -0.098 4.098 11 C 0.170 3.830 12 N -0.762 5.762 13 C 0.554 3.446 14 O -0.581 6.581 15 C -0.544 4.544 16 H 0.068 0.932 17 C 0.087 3.913 18 N -0.768 5.768 19 Si 0.908 3.092 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.085 4.085 24 C -0.147 4.147 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.408 0.592 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.381 0.619 38 H 0.267 0.733 39 H 0.128 0.872 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.353 16.720 -18.601 26.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.135 4.135 3 C -0.204 4.204 4 C 0.300 3.700 5 O -0.391 6.391 6 N -0.318 5.318 7 C 0.041 3.959 8 C -0.142 4.142 9 C -0.104 4.104 10 C -0.099 4.099 11 C 0.046 3.954 12 N -0.418 5.418 13 C 0.358 3.642 14 O -0.464 6.464 15 C -0.581 4.581 16 H 0.086 0.914 17 C -0.133 4.133 18 N -0.397 5.397 19 Si 0.732 3.268 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.104 4.104 24 C -0.167 4.167 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.118 0.882 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.244 0.756 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.212 0.788 38 H 0.078 0.922 39 H 0.146 0.854 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.115 16.412 -16.974 25.686 hybrid contribution 1.026 -0.426 -1.098 1.562 sum -9.088 15.986 -18.071 25.782 Atomic orbital electron populations 1.21632 0.92141 1.03100 1.02313 1.21333 0.98706 0.97319 0.96145 1.21822 1.01163 0.94124 1.03291 1.20901 0.81714 0.79605 0.87730 1.90741 1.55027 1.47380 1.45967 1.43554 1.07759 1.51556 1.28932 1.17704 0.95569 0.92187 0.90394 1.21051 1.00776 0.93662 0.98690 1.21037 0.95569 0.99041 0.94750 1.20230 0.95232 0.96247 0.98238 1.19794 0.94064 0.89566 0.91994 1.46203 1.51411 1.34241 1.09972 1.18259 0.80120 0.80804 0.85004 1.90599 1.65317 1.74213 1.16266 1.20915 1.28619 1.14262 0.94308 0.91395 1.25716 0.95723 0.97454 0.94387 1.70031 1.35188 1.32369 1.02140 0.86320 0.79997 0.80671 0.79774 1.18801 1.20192 1.20178 1.20926 0.99354 0.94429 0.95724 1.20804 0.97454 1.01108 0.97383 0.91771 0.91846 0.91771 0.88160 0.92134 0.91089 0.91830 0.75603 0.85162 0.85480 0.92516 0.92509 0.78779 0.92182 0.85406 0.85978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 8.48 37.16 0.32 -0.60 16 2 C -0.11 -0.71 3.27 -91.77 -0.30 -1.01 16 3 C -0.15 -0.65 9.09 37.16 0.34 -0.32 16 4 C 0.51 5.22 6.89 -10.99 -0.08 5.15 16 5 O -0.52 -7.42 13.67 5.55 0.08 -7.34 16 6 N -0.67 -6.22 5.27 -9.86 -0.05 -6.27 16 7 C 0.13 1.68 6.28 -83.69 -0.53 1.15 16 8 C -0.12 -1.74 8.66 -39.39 -0.34 -2.08 16 9 C -0.08 -1.30 9.69 -39.61 -0.38 -1.68 16 10 C -0.10 -1.58 5.25 -104.59 -0.55 -2.13 16 11 C 0.17 3.39 5.80 -5.19 -0.03 3.36 16 12 N -0.76 -17.45 5.54 -62.90 -0.35 -17.80 16 13 C 0.55 16.03 7.75 -12.98 -0.10 15.93 16 14 O -0.58 -19.14 15.02 5.20 0.08 -19.06 16 15 C -0.54 -15.56 9.54 -35.63 -0.34 -15.90 16 16 H 0.07 1.79 7.85 -52.49 -0.41 1.37 16 17 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 18 N -0.77 -23.33 11.83 55.55 0.66 -22.67 16 19 Si 0.91 20.32 29.56 -169.99 -5.02 15.30 16 20 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 C -0.09 -1.19 9.69 -39.61 -0.38 -1.57 16 24 C -0.15 -1.75 9.96 -39.39 -0.39 -2.14 16 25 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 26 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 27 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 28 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.20 7.45 -51.93 -0.39 -0.19 16 30 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.41 2.35 8.09 -40.82 -0.33 2.02 16 33 H 0.13 1.90 6.42 -52.49 -0.34 1.56 16 34 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 35 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 36 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 37 H 0.38 7.83 8.44 -40.82 -0.34 7.48 16 38 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 39 H 0.13 1.68 8.06 -52.48 -0.42 1.25 16 40 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 343.70 15.07 5.18 5.18 Total: -1.00 -36.93 343.70 -7.88 -44.81 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -5.58 Total: 7.35 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -2.86 Total: 0.52 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 0.26 Total: -46.75 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: 0.15 Total: -26.40 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.93 -7.88 -44.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219662786.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.750 kcal (2) G-P(sol) polarization free energy of solvation -36.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds