Wall clock time and date at job start Tue Mar 31 2020 06:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46812 * 2 1 4 4 C 1.50695 * 109.47197 * 119.99993 * 2 1 3 5 5 O 1.21288 * 119.99814 * 359.97438 * 4 2 1 6 6 N 1.34778 * 119.99838 * 180.02562 * 4 2 1 7 7 C 1.39926 * 119.99779 * 185.26447 * 6 4 2 8 8 C 1.38873 * 120.06782 * 33.29159 * 7 6 4 9 9 C 1.38112 * 119.93071 * 180.02562 * 8 7 6 10 10 C 1.38283 * 120.07070 * 0.02562 * 9 8 7 11 11 C 1.50698 * 119.93289 * 179.97438 * 10 9 8 12 12 N 1.46504 * 109.46930 * 90.00349 * 11 10 9 13 13 C 1.34778 * 119.99815 * 180.02562 * 12 11 10 14 14 O 1.21683 * 120.00095 * 359.97438 * 13 12 11 15 15 C 1.46382 * 119.99449 * 179.97438 * 13 12 11 16 16 H 1.07999 * 120.00422 * 0.02562 * 15 13 12 17 17 C 1.40053 * 119.99282 * 179.97438 * 15 13 12 18 18 N 1.30664 * 120.00366 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 119.99670 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47227 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47133 * 120.00127 * 19 17 15 22 22 H 1.48497 * 109.47249 * 240.00249 * 19 17 15 23 23 C 1.38285 * 120.13800 * 0.25319 * 10 9 8 24 24 C 1.38115 * 120.07332 * 359.49252 * 23 10 9 25 25 H 1.08993 * 109.47384 * 300.00082 * 1 2 3 26 26 H 1.09007 * 109.47425 * 60.00122 * 1 2 3 27 27 H 1.08998 * 109.47051 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47141 * 240.00390 * 2 1 3 29 29 H 1.09001 * 109.46534 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.46720 * 299.99621 * 3 2 1 31 31 H 1.08995 * 109.46949 * 60.00272 * 3 2 1 32 32 H 0.96998 * 120.00163 * 5.26537 * 6 4 2 33 33 H 1.07997 * 120.03932 * 0.02562 * 8 7 6 34 34 H 1.08002 * 119.97035 * 179.97438 * 9 8 7 35 35 H 1.08999 * 109.47113 * 209.99457 * 11 10 9 36 36 H 1.08995 * 109.47129 * 330.00622 * 11 10 9 37 37 H 0.97005 * 120.00028 * 359.97438 * 12 11 10 38 38 H 0.97005 * 120.00272 * 179.97438 * 18 17 15 39 39 H 1.08005 * 119.96458 * 179.74681 * 23 10 9 40 40 H 1.07988 * 120.03915 * 180.25800 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.2441 -1.1709 2.0290 6 7 3.3574 -0.8330 1.4439 7 6 3.8248 -1.5864 2.5264 8 6 3.1218 -2.7068 2.9496 9 6 3.5855 -3.4481 4.0187 10 6 4.7481 -3.0754 4.6681 11 6 5.2508 -3.8861 5.8347 12 7 6.1490 -4.9365 5.3484 13 6 6.7218 -5.7901 6.2201 14 8 6.4933 -5.6881 7.4109 15 6 7.6187 -6.8399 5.7341 16 1 7.8218 -6.9301 4.6772 17 6 8.2143 -7.7266 6.6399 18 7 7.9689 -7.6171 7.9186 19 14 9.3584 -9.0667 6.0198 20 1 9.4696 -8.9778 4.5416 21 1 10.7016 -8.8915 6.6282 22 1 8.8139 -10.3959 6.3966 23 6 5.4473 -1.9569 4.2528 24 6 4.9918 -1.2144 3.1810 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.9871 -0.3991 0.8472 33 1 2.2135 -2.9983 2.4432 34 1 3.0390 -4.3193 4.3486 35 1 5.7911 -3.2361 6.5229 36 1 4.4061 -4.3411 6.3518 37 1 6.3309 -5.0180 4.3991 38 1 8.3812 -8.2315 8.5460 39 1 6.3528 -1.6660 4.7645 40 1 5.5405 -0.3435 2.8545 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219662786.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:00 Heat of formation + Delta-G solvation = -89.326407 kcal Electronic energy + Delta-G solvation = -21790.533415 eV Core-core repulsion = 18375.389538 eV Total energy + Delta-G solvation = -3415.143877 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.71918 -40.10183 -39.09654 -36.38714 -35.57506 -34.88685 -34.29232 -31.95999 -31.25819 -28.67278 -27.97093 -26.55102 -24.57445 -23.88635 -22.30619 -21.65690 -20.89089 -19.36969 -18.80014 -18.15500 -17.51475 -16.72935 -16.60381 -16.23121 -16.02935 -15.62336 -15.57749 -15.02478 -14.75619 -14.61767 -14.31365 -14.29786 -13.83902 -13.62336 -13.28378 -13.18382 -13.09343 -12.87910 -12.73941 -12.67646 -12.40216 -12.17649 -12.07602 -12.00329 -11.96822 -11.39440 -10.94943 -10.81202 -9.93707 -9.92067 -9.50338 -9.09495 -8.28613 -6.85982 0.14775 0.41428 1.40729 1.41060 1.53865 1.59428 2.01303 2.25442 2.46695 2.70515 3.35976 3.56432 3.60616 3.81884 3.87691 3.96369 4.02419 4.04838 4.32080 4.42299 4.44087 4.59689 4.74431 4.76995 4.78327 4.88868 4.93102 5.05528 5.08371 5.21237 5.27004 5.31974 5.32288 5.33259 5.46676 5.68716 5.87132 5.99895 6.19716 6.26346 6.40152 6.86407 7.10848 7.53763 8.48126 8.67018 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.037503 B = 0.002527 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.431674 B =11076.960573 C =11194.483031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 C -0.144 4.144 4 C 0.508 3.492 5 O -0.565 6.565 6 N -0.659 5.659 7 C 0.143 3.857 8 C -0.133 4.133 9 C -0.092 4.092 10 C -0.115 4.115 11 C 0.177 3.823 12 N -0.748 5.748 13 C 0.537 3.463 14 O -0.633 6.633 15 C -0.571 4.571 16 H 0.088 0.912 17 C 0.026 3.974 18 N -0.823 5.823 19 Si 1.001 2.999 20 H -0.247 1.247 21 H -0.267 1.267 22 H -0.269 1.269 23 C -0.085 4.085 24 C -0.133 4.133 25 H 0.045 0.955 26 H 0.089 0.911 27 H 0.046 0.954 28 H 0.128 0.872 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.429 0.571 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.046 0.954 36 H 0.036 0.964 37 H 0.394 0.606 38 H 0.275 0.725 39 H 0.137 0.863 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.014 17.955 -22.125 29.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.126 4.126 3 C -0.202 4.202 4 C 0.298 3.702 5 O -0.442 6.442 6 N -0.306 5.306 7 C 0.048 3.952 8 C -0.153 4.153 9 C -0.112 4.112 10 C -0.116 4.116 11 C 0.053 3.947 12 N -0.403 5.403 13 C 0.341 3.659 14 O -0.521 6.521 15 C -0.607 4.607 16 H 0.106 0.894 17 C -0.189 4.189 18 N -0.452 5.452 19 Si 0.820 3.180 20 H -0.169 1.169 21 H -0.192 1.192 22 H -0.194 1.194 23 C -0.104 4.104 24 C -0.153 4.153 25 H 0.064 0.936 26 H 0.107 0.893 27 H 0.066 0.934 28 H 0.145 0.855 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.068 0.932 32 H 0.269 0.731 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.227 0.773 38 H 0.085 0.915 39 H 0.155 0.845 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.776 17.706 -20.585 28.535 hybrid contribution 0.504 -0.694 -0.062 0.860 sum -8.272 17.011 -20.647 28.002 Atomic orbital electron populations 1.21656 0.92842 1.02149 1.02690 1.21402 0.98060 0.98385 0.94767 1.21849 1.02279 0.92427 1.03601 1.21746 0.81411 0.78786 0.88276 1.90732 1.56224 1.49407 1.47835 1.43518 1.08125 1.50747 1.28208 1.17840 0.95167 0.91406 0.90755 1.21039 1.00967 0.94667 0.98652 1.20971 0.95518 0.99307 0.95370 1.19843 0.96439 0.97404 0.97934 1.19719 0.92553 0.88834 0.93590 1.45873 1.50698 1.33756 1.09931 1.18677 0.80526 0.81798 0.84897 1.90551 1.67218 1.75820 1.18515 1.21446 1.28998 1.14723 0.95574 0.89425 1.27022 0.97340 1.00239 0.94257 1.70198 1.36811 1.34039 1.04167 0.84930 0.76970 0.76234 0.79867 1.16946 1.19200 1.19395 1.21069 0.99361 0.93653 0.96311 1.21100 0.96943 1.01461 0.95837 0.93574 0.89252 0.93434 0.85469 0.90381 0.89134 0.93221 0.73127 0.85832 0.86304 0.93612 0.94535 0.77250 0.91529 0.84518 0.81956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.48 71.98 0.61 -1.04 16 2 C -0.11 -1.03 3.27 -11.54 -0.04 -1.06 16 3 C -0.14 -0.77 9.09 71.99 0.65 -0.12 16 4 C 0.51 9.45 6.89 87.66 0.60 10.06 16 5 O -0.56 -16.18 13.67 -3.05 -0.04 -16.22 16 6 N -0.66 -10.27 5.27 -303.50 -1.60 -11.87 16 7 C 0.14 3.26 6.28 38.15 0.24 3.50 16 8 C -0.13 -3.78 8.66 22.39 0.19 -3.59 16 9 C -0.09 -2.91 9.69 22.25 0.22 -2.69 16 10 C -0.12 -3.75 5.25 -19.84 -0.10 -3.85 16 11 C 0.18 7.41 5.80 85.63 0.50 7.91 16 12 N -0.75 -35.31 5.54 -471.14 -2.61 -37.92 16 13 C 0.54 32.15 7.75 86.36 0.67 32.82 16 14 O -0.63 -43.82 15.02 -4.30 -0.06 -43.89 16 15 C -0.57 -33.03 9.54 24.83 0.24 -32.79 16 16 H 0.09 4.55 7.85 -2.91 -0.02 4.53 16 17 C 0.03 1.49 5.50 85.31 0.47 1.96 16 18 N -0.82 -51.30 11.83 21.84 0.26 -51.04 16 19 Si 1.00 41.45 29.56 68.60 2.03 43.47 16 20 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 21 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 22 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 23 C -0.08 -2.25 9.69 22.25 0.22 -2.03 16 24 C -0.13 -2.76 9.96 22.39 0.22 -2.54 16 25 H 0.05 0.72 8.10 -2.39 -0.02 0.70 16 26 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.05 0.73 8.10 -2.39 -0.02 0.71 16 28 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.08 0.16 7.45 -2.39 -0.02 0.14 16 30 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.43 3.09 8.09 -92.71 -0.75 2.34 16 33 H 0.12 3.68 6.42 -2.91 -0.02 3.66 16 34 H 0.12 3.79 8.06 -2.91 -0.02 3.77 16 35 H 0.05 1.99 8.08 -2.39 -0.02 1.97 16 36 H 0.04 1.65 8.08 -2.39 -0.02 1.63 16 37 H 0.39 16.36 8.44 -92.70 -0.78 15.58 16 38 H 0.27 15.43 8.29 -92.70 -0.77 14.66 16 39 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 40 H 0.16 2.08 8.06 -2.92 -0.02 2.06 16 Total: -1.00 -84.89 343.70 2.19 -82.70 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: -0.47 Total: 28.24 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 4.69 Total: 6.52 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -3.95 Total: -100.83 kcal Atomic # 8 Polarization: -60.00 SS G_CDS: -0.11 Total: -60.11 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.47 kcal Total: -84.89 2.19 -82.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219662786.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.628 kcal (2) G-P(sol) polarization free energy of solvation -84.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds