Wall clock time and date at job start Tue Mar 31 2020 06:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47312 * 2 1 4 4 H 1.08999 * 109.47080 * 54.92791 * 3 2 1 5 5 C 1.50699 * 109.47305 * 174.92020 * 3 2 1 6 6 H 1.08005 * 119.99788 * 119.99667 * 5 3 2 7 7 C 1.37877 * 120.00545 * 300.00749 * 5 3 2 8 8 N 1.31516 * 119.99527 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00175 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46869 * 89.99923 * 9 7 5 11 11 H 1.48503 * 109.46779 * 209.99717 * 9 7 5 12 12 H 1.48490 * 109.47032 * 329.99681 * 9 7 5 13 13 N 1.46896 * 109.47283 * 294.92784 * 3 2 1 14 14 C 1.46894 * 111.00021 * 154.13136 * 13 3 2 15 15 C 1.50708 * 109.47343 * 185.61737 * 14 13 3 16 16 C 1.38274 * 119.89911 * 89.99868 * 15 14 13 17 17 C 1.38316 * 120.26062 * 179.97438 * 16 15 14 18 18 C 1.38394 * 119.87452 * 0.02562 * 17 16 15 19 19 C 1.39399 * 119.86141 * 0.02626 * 18 17 16 20 20 C 1.38288 * 119.90134 * 269.73036 * 15 14 13 21 21 N 1.40214 * 119.27717 * 179.97438 * 19 18 17 22 22 C 1.35091 * 118.98189 * 15.45479 * 21 19 18 23 23 O 1.21298 * 120.13343 * 181.72797 * 22 21 19 24 24 C 1.50753 * 119.73405 * 1.70591 * 22 21 19 25 25 O 1.35979 * 120.67203 * 180.02562 * 18 17 16 26 26 H 1.09002 * 109.47109 * 300.50660 * 1 2 3 27 27 H 1.09008 * 109.46929 * 60.50371 * 1 2 3 28 28 H 1.08994 * 109.47414 * 180.50607 * 1 2 3 29 29 H 1.09000 * 109.47037 * 240.00308 * 2 1 3 30 30 H 1.09002 * 109.47003 * 120.00170 * 2 1 3 31 31 H 0.97001 * 119.99443 * 180.02562 * 8 7 5 32 32 H 1.00903 * 110.99557 * 278.08318 * 13 3 2 33 33 H 1.08999 * 109.47744 * 305.61913 * 14 13 3 34 34 H 1.09008 * 109.47405 * 65.62330 * 14 13 3 35 35 H 1.08007 * 119.87261 * 359.97438 * 16 15 14 36 36 H 1.07998 * 120.06157 * 179.97438 * 17 16 15 37 37 H 1.08001 * 120.08942 * 359.96894 * 20 15 14 38 38 H 0.96994 * 120.51013 * 195.43493 * 21 19 18 39 39 H 1.08999 * 109.44179 * 208.62163 * 24 22 21 40 40 H 1.08991 * 109.41684 * 88.70325 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9819 0.8411 5 6 3.5418 1.4443 0.1258 6 1 4.1481 1.8885 -0.6498 7 6 4.1418 0.8788 1.2309 8 7 3.4035 0.3382 2.1755 9 14 6.0033 0.8806 1.3864 10 1 6.4402 2.1137 2.0890 11 1 6.4364 -0.3102 2.1608 12 1 6.6131 0.8395 0.0330 13 7 1.6529 2.0987 -1.2559 14 6 1.5539 3.5538 -1.0808 15 6 1.0234 4.1773 -2.3462 16 6 -0.3394 4.3370 -2.5170 17 6 -0.8344 4.9087 -3.6751 18 6 0.0377 5.3220 -4.6671 19 6 1.4115 5.1599 -4.4953 20 6 1.9013 4.5928 -3.3305 21 7 2.2838 5.5825 -5.5084 22 6 1.8184 6.4089 -6.4704 23 8 2.5462 6.7623 -7.3741 24 6 0.3906 6.8896 -6.4166 25 8 -0.4313 5.8865 -5.8119 26 1 -0.3633 0.5217 0.8854 27 1 -0.3633 0.5060 -0.8945 28 1 -0.3634 -1.0275 0.0091 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8256 -0.0593 2.9531 32 1 2.2959 1.8668 -1.9982 33 1 0.8774 3.7754 -0.2553 34 1 2.5408 3.9614 -0.8611 35 1 -1.0201 4.0142 -1.7431 36 1 -1.8994 5.0316 -3.8054 37 1 2.9657 4.4716 -3.1931 38 1 3.2074 5.2863 -5.5182 39 1 0.0359 7.0871 -7.4282 40 1 0.3386 7.8057 -5.8285 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231643373.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:41 Heat of formation + Delta-G solvation = -50.619395 kcal Electronic energy + Delta-G solvation = -22565.435502 eV Core-core repulsion = 19151.970088 eV Total energy + Delta-G solvation = -3413.465415 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.53231 -39.08082 -37.89299 -36.17213 -35.23349 -32.86146 -31.50044 -30.17028 -29.85436 -28.15444 -26.46492 -24.57475 -23.09122 -22.83983 -21.98772 -19.66908 -19.42175 -18.93176 -17.91060 -17.10269 -16.68068 -16.20180 -15.32595 -15.08753 -14.91305 -14.71946 -14.37897 -14.18720 -13.90924 -13.56168 -13.21732 -12.97450 -12.79526 -12.37333 -12.04684 -11.66494 -11.42371 -11.27977 -11.22469 -11.04184 -10.89269 -10.76815 -10.70750 -10.25327 -10.19235 -9.64328 -9.57464 -9.13452 -8.66254 -8.43715 -7.97554 -7.34506 -6.05999 -4.19330 1.00419 1.24332 2.11294 2.55727 3.11822 3.22068 3.30178 3.32162 3.65994 3.79258 4.33952 4.54006 4.63597 4.81525 4.94572 5.18099 5.21173 5.31204 5.40697 5.56537 5.65262 5.92883 6.06192 6.13308 6.29918 6.35314 6.37680 6.48810 6.61320 6.65984 6.68274 6.77111 7.07686 7.14318 7.16552 7.37376 7.52723 7.54695 7.71633 8.01917 8.05939 8.24890 8.56368 8.92584 9.48740 10.94182 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020486 B = 0.003634 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.481079 B = 7702.283029 C = 8763.217317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.548 4.548 6 H 0.053 0.947 7 C 0.069 3.931 8 N -0.883 5.883 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.682 5.682 14 C 0.101 3.899 15 C -0.050 4.050 16 C -0.089 4.089 17 C -0.108 4.108 18 C 0.063 3.937 19 C 0.087 3.913 20 C -0.116 4.116 21 N -0.657 5.657 22 C 0.490 3.510 23 O -0.521 6.521 24 C 0.051 3.949 25 O -0.304 6.304 26 H 0.036 0.964 27 H 0.048 0.952 28 H 0.024 0.976 29 H 0.030 0.970 30 H 0.090 0.910 31 H 0.262 0.738 32 H 0.329 0.671 33 H 0.074 0.926 34 H 0.039 0.961 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.416 0.584 39 H 0.142 0.858 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.743 10.623 -10.870 17.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.587 4.587 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.521 5.521 9 Si 0.716 3.284 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.311 5.311 14 C -0.029 4.029 15 C -0.052 4.052 16 C -0.108 4.108 17 C -0.127 4.127 18 C 0.017 3.983 19 C -0.008 4.008 20 C -0.137 4.137 21 N -0.304 5.304 22 C 0.277 3.723 23 O -0.396 6.396 24 C -0.027 4.027 25 O -0.219 6.219 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.145 0.855 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.149 0.851 38 H 0.255 0.745 39 H 0.160 0.840 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.342 10.655 -11.224 17.581 hybrid contribution 2.782 0.097 0.262 2.796 sum -5.560 10.752 -10.962 16.331 Atomic orbital electron populations 1.21703 0.98949 0.98427 1.00401 1.21493 0.92159 0.99107 1.01687 1.19173 0.92869 0.91311 0.85887 0.94875 1.21846 0.92718 1.38548 1.05606 0.92902 1.24921 0.97910 0.94889 0.95701 1.69873 1.34857 1.38063 1.09351 0.86664 0.86026 0.77595 0.78108 1.20748 1.21112 1.20034 1.60949 1.55130 1.04725 1.10309 1.20779 0.99295 0.90530 0.92257 1.20006 0.92961 0.95951 0.96243 1.20964 0.95130 0.97883 0.96870 1.20511 0.99489 1.01463 0.91188 1.18526 0.89873 1.01720 0.88149 1.17973 0.88686 1.03365 0.90766 1.20609 1.00570 1.01078 0.91450 1.43728 1.14411 1.47004 1.25232 1.21568 0.91083 0.78435 0.81198 1.90804 1.59302 1.56020 1.33487 1.23140 0.86037 0.91561 1.01955 1.86254 1.45864 1.52878 1.36888 0.94482 0.93248 0.95665 0.95105 0.89153 0.92812 0.85512 0.90741 0.94274 0.84628 0.84584 0.85061 0.74496 0.83998 0.88480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.79 37.16 0.36 -2.33 16 2 C -0.11 -2.43 5.45 -26.73 -0.15 -2.57 16 3 C 0.22 4.98 1.97 -68.87 -0.14 4.85 16 4 H 0.03 0.85 7.70 -51.93 -0.40 0.45 16 5 C -0.55 -14.01 8.47 -34.44 -0.29 -14.30 16 6 H 0.05 1.34 7.73 -52.48 -0.41 0.93 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.10 11.29 55.43 0.63 -23.48 16 9 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.68 -13.03 5.67 -109.22 -0.62 -13.65 16 14 C 0.10 1.66 5.64 -4.98 -0.03 1.64 16 15 C -0.05 -0.69 5.44 -104.59 -0.57 -1.26 16 16 C -0.09 -1.09 9.69 -39.54 -0.38 -1.47 16 17 C -0.11 -1.21 10.00 -39.50 -0.39 -1.60 16 18 C 0.06 0.76 6.44 -39.09 -0.25 0.51 16 19 C 0.09 1.06 6.54 -83.49 -0.55 0.51 16 20 C -0.12 -1.48 9.60 -39.47 -0.38 -1.86 16 21 N -0.66 -7.47 5.47 -9.66 -0.05 -7.53 16 22 C 0.49 5.74 7.94 -10.82 -0.09 5.66 16 23 O -0.52 -7.56 17.95 5.54 0.10 -7.46 16 24 C 0.05 0.45 7.17 36.03 0.26 0.71 16 25 O -0.30 -3.38 10.46 -19.67 -0.21 -3.59 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.92 7.77 -51.92 -0.40 0.52 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 2.33 5.95 -51.93 -0.31 2.02 16 31 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.33 6.34 8.45 -39.29 -0.33 6.00 16 33 H 0.07 1.23 7.86 -51.93 -0.41 0.82 16 34 H 0.04 0.69 8.06 -51.92 -0.42 0.27 16 35 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 36 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.42 4.21 8.89 -40.82 -0.36 3.85 16 39 H 0.14 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 336.74 15.07 5.07 5.07 Total: -1.00 -29.02 336.74 -8.34 -37.36 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -5.56 Total: 7.65 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -2.68 Total: -9.81 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: -0.05 Total: -44.65 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -0.11 Total: -11.04 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.02 -8.34 -37.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231643373.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.264 kcal (2) G-P(sol) polarization free energy of solvation -29.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds