Wall clock time and date at job start Tue Mar 31 2020 06:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47312 * 2 1 4 4 H 1.08999 * 109.47080 * 54.92791 * 3 2 1 5 5 C 1.50699 * 109.47305 * 174.92020 * 3 2 1 6 6 H 1.08005 * 119.99788 * 119.99667 * 5 3 2 7 7 C 1.37877 * 120.00545 * 300.00749 * 5 3 2 8 8 N 1.31516 * 119.99527 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00175 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46869 * 89.99923 * 9 7 5 11 11 H 1.48503 * 109.46779 * 209.99717 * 9 7 5 12 12 H 1.48490 * 109.47032 * 329.99681 * 9 7 5 13 13 N 1.46896 * 109.47283 * 294.92784 * 3 2 1 14 14 C 1.46894 * 111.00021 * 154.13136 * 13 3 2 15 15 C 1.50708 * 109.47343 * 185.61737 * 14 13 3 16 16 C 1.38274 * 119.89911 * 89.99868 * 15 14 13 17 17 C 1.38316 * 120.26062 * 179.97438 * 16 15 14 18 18 C 1.38394 * 119.87452 * 0.02562 * 17 16 15 19 19 C 1.39399 * 119.86141 * 0.02626 * 18 17 16 20 20 C 1.38288 * 119.90134 * 269.73036 * 15 14 13 21 21 N 1.40214 * 119.27717 * 179.97438 * 19 18 17 22 22 C 1.35091 * 118.98189 * 15.45479 * 21 19 18 23 23 O 1.21298 * 120.13343 * 181.72797 * 22 21 19 24 24 C 1.50753 * 119.73405 * 1.70591 * 22 21 19 25 25 O 1.35979 * 120.67203 * 180.02562 * 18 17 16 26 26 H 1.09002 * 109.47109 * 300.50660 * 1 2 3 27 27 H 1.09008 * 109.46929 * 60.50371 * 1 2 3 28 28 H 1.08994 * 109.47414 * 180.50607 * 1 2 3 29 29 H 1.09000 * 109.47037 * 240.00308 * 2 1 3 30 30 H 1.09002 * 109.47003 * 120.00170 * 2 1 3 31 31 H 0.97001 * 119.99443 * 180.02562 * 8 7 5 32 32 H 1.00903 * 110.99557 * 278.08318 * 13 3 2 33 33 H 1.08999 * 109.47744 * 305.61913 * 14 13 3 34 34 H 1.09008 * 109.47405 * 65.62330 * 14 13 3 35 35 H 1.08007 * 119.87261 * 359.97438 * 16 15 14 36 36 H 1.07998 * 120.06157 * 179.97438 * 17 16 15 37 37 H 1.08001 * 120.08942 * 359.96894 * 20 15 14 38 38 H 0.96994 * 120.51013 * 195.43493 * 21 19 18 39 39 H 1.08999 * 109.44179 * 208.62163 * 24 22 21 40 40 H 1.08991 * 109.41684 * 88.70325 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9819 0.8411 5 6 3.5418 1.4443 0.1258 6 1 4.1481 1.8885 -0.6498 7 6 4.1418 0.8788 1.2309 8 7 3.4035 0.3382 2.1755 9 14 6.0033 0.8806 1.3864 10 1 6.4402 2.1137 2.0890 11 1 6.4364 -0.3102 2.1608 12 1 6.6131 0.8395 0.0330 13 7 1.6529 2.0987 -1.2559 14 6 1.5539 3.5538 -1.0808 15 6 1.0234 4.1773 -2.3462 16 6 -0.3394 4.3370 -2.5170 17 6 -0.8344 4.9087 -3.6751 18 6 0.0377 5.3220 -4.6671 19 6 1.4115 5.1599 -4.4953 20 6 1.9013 4.5928 -3.3305 21 7 2.2838 5.5825 -5.5084 22 6 1.8184 6.4089 -6.4704 23 8 2.5462 6.7623 -7.3741 24 6 0.3906 6.8896 -6.4166 25 8 -0.4313 5.8865 -5.8119 26 1 -0.3633 0.5217 0.8854 27 1 -0.3633 0.5060 -0.8945 28 1 -0.3634 -1.0275 0.0091 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8256 -0.0593 2.9531 32 1 2.2959 1.8668 -1.9982 33 1 0.8774 3.7754 -0.2553 34 1 2.5408 3.9614 -0.8611 35 1 -1.0201 4.0142 -1.7431 36 1 -1.8994 5.0316 -3.8054 37 1 2.9657 4.4716 -3.1931 38 1 3.2074 5.2863 -5.5182 39 1 0.0359 7.0871 -7.4282 40 1 0.3386 7.8057 -5.8285 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231643373.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:41 Heat of formation + Delta-G solvation = -69.827134 kcal Electronic energy + Delta-G solvation = -22566.268412 eV Core-core repulsion = 19151.970088 eV Total energy + Delta-G solvation = -3414.298325 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.42910 -40.07018 -38.90438 -37.70346 -36.27198 -34.48654 -33.18153 -31.36690 -30.82308 -29.18879 -28.07448 -25.94239 -24.42587 -24.01579 -23.20616 -21.38887 -20.44741 -19.82270 -18.97239 -18.56274 -17.91980 -17.12097 -16.79535 -16.33941 -16.07343 -15.78452 -15.65521 -15.37512 -15.17996 -14.83591 -14.53702 -14.20355 -13.95162 -13.74557 -13.44983 -13.15565 -13.08486 -12.82773 -12.61857 -12.45397 -12.26994 -12.17514 -11.99925 -11.76731 -11.47169 -11.31062 -11.19487 -10.98002 -10.44085 -9.63053 -9.05458 -8.88803 -8.04048 -6.25766 0.05605 0.28597 1.21148 1.38176 1.41215 1.48915 1.69527 2.29214 2.40779 2.69605 2.95072 3.16384 3.59888 3.81249 4.01048 4.07100 4.20359 4.22349 4.34448 4.54711 4.61023 4.69492 4.82108 4.88195 4.96067 4.99140 5.01397 5.18118 5.23176 5.42582 5.48026 5.54756 5.65204 5.67215 5.72058 5.76627 5.81144 6.12930 6.22911 6.27511 6.39834 6.65334 6.82448 7.03102 7.45814 8.92222 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020486 B = 0.003634 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.481079 B = 7702.283029 C = 8763.217317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.222 3.778 4 H 0.005 0.995 5 C -0.559 4.559 6 H 0.050 0.950 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.946 3.054 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.672 5.672 14 C 0.107 3.893 15 C -0.064 4.064 16 C -0.087 4.087 17 C -0.102 4.102 18 C 0.063 3.937 19 C 0.083 3.917 20 C -0.118 4.118 21 N -0.657 5.657 22 C 0.487 3.513 23 O -0.554 6.554 24 C 0.052 3.948 25 O -0.307 6.307 26 H 0.032 0.968 27 H 0.060 0.940 28 H 0.041 0.959 29 H 0.025 0.975 30 H 0.059 0.941 31 H 0.261 0.739 32 H 0.329 0.671 33 H 0.071 0.929 34 H 0.024 0.976 35 H 0.146 0.854 36 H 0.162 0.838 37 H 0.132 0.868 38 H 0.418 0.582 39 H 0.168 0.832 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.772 11.509 -12.122 18.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C 0.114 3.886 4 H 0.023 0.977 5 C -0.598 4.598 6 H 0.069 0.931 7 C -0.178 4.178 8 N -0.548 5.548 9 Si 0.773 3.227 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.196 1.196 13 N -0.300 5.300 14 C -0.022 4.022 15 C -0.066 4.066 16 C -0.106 4.106 17 C -0.120 4.120 18 C 0.017 3.983 19 C -0.012 4.012 20 C -0.139 4.139 21 N -0.303 5.303 22 C 0.276 3.724 23 O -0.432 6.432 24 C -0.025 4.025 25 O -0.222 6.222 26 H 0.051 0.949 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.145 0.855 33 H 0.090 0.910 34 H 0.042 0.958 35 H 0.164 0.836 36 H 0.180 0.820 37 H 0.150 0.850 38 H 0.258 0.742 39 H 0.186 0.814 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.379 11.549 -12.481 19.419 hybrid contribution 3.078 -0.129 0.602 3.139 sum -6.301 11.420 -11.878 17.641 Atomic orbital electron populations 1.21559 0.96261 0.99658 1.00741 1.21360 0.94550 0.98413 0.99853 1.18938 0.91469 0.91564 0.86666 0.97679 1.22192 0.94211 1.38004 1.05433 0.93129 1.25612 1.01708 0.94851 0.95641 1.69999 1.36263 1.38830 1.09746 0.85747 0.81509 0.77455 0.78031 1.20451 1.21050 1.19634 1.60867 1.54430 1.06404 1.08349 1.20687 0.98619 0.88861 0.94027 1.19711 0.93909 0.97578 0.95370 1.21081 0.94462 0.97477 0.97606 1.20732 1.00696 1.00305 0.90287 1.18726 0.89762 1.01278 0.88556 1.17974 0.89082 1.03515 0.90637 1.20590 1.00603 1.01154 0.91596 1.43781 1.14627 1.46859 1.25038 1.22125 0.92087 0.77772 0.80431 1.90792 1.60467 1.57233 1.34674 1.23428 0.83784 0.91571 1.03727 1.86253 1.46117 1.53434 1.36390 0.94852 0.92077 0.93986 0.95569 0.92237 0.92936 0.85526 0.91027 0.95825 0.83636 0.82029 0.84998 0.74218 0.81446 0.85913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.78 9.79 71.98 0.71 -4.08 16 2 C -0.10 -4.76 5.45 30.59 0.17 -4.59 16 3 C 0.22 10.45 1.97 44.17 0.09 10.54 16 4 H 0.01 0.28 7.70 -2.39 -0.02 0.26 16 5 C -0.56 -28.99 8.47 25.60 0.22 -28.78 16 6 H 0.05 2.58 7.73 -2.91 -0.02 2.56 16 7 C 0.02 1.17 5.29 84.65 0.45 1.62 16 8 N -0.91 -50.57 11.29 21.45 0.24 -50.33 16 9 Si 0.95 42.27 29.54 68.60 2.03 44.30 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 13 N -0.67 -25.65 5.67 -499.47 -2.83 -28.48 16 14 C 0.11 3.55 5.64 85.56 0.48 4.03 16 15 C -0.06 -1.70 5.44 -19.84 -0.11 -1.81 16 16 C -0.09 -1.95 9.69 22.30 0.22 -1.73 16 17 C -0.10 -1.98 10.00 22.33 0.22 -1.76 16 18 C 0.06 1.36 6.44 22.59 0.15 1.50 16 19 C 0.08 1.89 6.54 38.14 0.25 2.14 16 20 C -0.12 -2.92 9.60 22.34 0.21 -2.70 16 21 N -0.66 -14.16 5.47 -302.69 -1.66 -15.82 16 22 C 0.49 10.62 7.94 87.62 0.70 11.32 16 23 O -0.55 -15.52 17.95 -3.09 -0.06 -15.58 16 24 C 0.05 0.77 7.17 71.25 0.51 1.28 16 25 O -0.31 -5.88 10.46 -93.31 -0.98 -6.85 16 26 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.06 2.18 7.77 -2.38 -0.02 2.16 16 28 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 3.13 5.95 -2.39 -0.01 3.12 16 31 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 32 H 0.33 12.64 8.45 -89.69 -0.76 11.88 16 33 H 0.07 2.38 7.86 -2.39 -0.02 2.36 16 34 H 0.02 0.85 8.06 -2.38 -0.02 0.83 16 35 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 36 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 37 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 38 H 0.42 8.24 8.89 -92.71 -0.82 7.42 16 39 H 0.17 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -62.13 336.74 0.49 -61.64 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: -0.51 Total: 24.13 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: 4.25 Total: -13.02 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -4.25 Total: -94.63 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -1.03 Total: -22.43 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -62.13 0.49 -61.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231643373.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.184 kcal (2) G-P(sol) polarization free energy of solvation -62.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds