Wall clock time and date at job start Tue Mar 31 2020 06:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.46905 * 2 1 4 4 C 1.53003 * 109.47437 * 119.99853 * 2 1 3 5 5 C 1.50689 * 109.47502 * 175.00227 * 4 2 1 6 6 O 1.21285 * 120.00103 * 0.02562 * 5 4 2 7 7 N 1.34772 * 120.00308 * 179.97438 * 5 4 2 8 8 N 1.40103 * 120.00531 * 179.97438 * 7 5 4 9 9 C 1.34772 * 120.00531 * 180.02562 * 8 7 5 10 10 O 1.21592 * 119.99603 * 0.02562 * 9 8 7 11 11 C 1.47641 * 120.00551 * 179.97438 * 9 8 7 12 12 C 1.40013 * 119.89141 * 0.27073 * 11 9 8 13 13 C 1.36315 * 120.10881 * 180.27788 * 12 11 9 14 14 C 1.40893 * 119.88481 * 359.45202 * 13 12 11 15 15 C 1.41114 * 120.09748 * 180.29801 * 14 13 12 16 16 H 1.08000 * 120.00330 * 335.06249 * 15 14 13 17 17 C 1.40223 * 119.99644 * 155.06801 * 15 14 13 18 18 N 1.30656 * 120.00207 * 342.19907 * 17 15 14 19 19 Si 1.86803 * 120.00199 * 162.20506 * 17 15 14 20 20 H 1.48503 * 109.47047 * 94.65856 * 19 17 15 21 21 H 1.48504 * 109.47089 * 214.65560 * 19 17 15 22 22 H 1.48498 * 109.46765 * 334.65988 * 19 17 15 23 23 C 1.40884 * 119.79739 * 0.28068 * 14 13 12 24 24 C 1.36315 * 119.88972 * 359.97438 * 23 14 13 25 25 H 1.09007 * 109.47370 * 299.99950 * 1 2 3 26 26 H 1.09004 * 109.47449 * 60.00257 * 1 2 3 27 27 H 1.09005 * 109.47052 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47262 * 239.99715 * 2 1 3 29 29 H 1.08999 * 109.47393 * 59.99795 * 3 2 1 30 30 H 1.09001 * 109.47177 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47113 * 299.99811 * 3 2 1 32 32 H 1.09005 * 109.47146 * 54.99643 * 4 2 1 33 33 H 1.09000 * 109.46846 * 295.00557 * 4 2 1 34 34 H 0.97006 * 119.99890 * 359.97438 * 7 5 4 35 35 H 0.97006 * 119.99578 * 359.97438 * 8 7 5 36 36 H 1.07997 * 119.94892 * 0.02562 * 12 11 9 37 37 H 1.07993 * 120.05993 * 179.72594 * 13 12 11 38 38 H 0.96994 * 120.00294 * 179.97438 * 18 17 15 39 39 H 1.08003 * 120.05494 * 180.02562 * 23 14 13 40 40 H 1.07999 * 119.94612 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5418 -0.8293 1.1890 6 8 4.1450 -0.3739 0.2404 7 7 4.2149 -1.4311 2.1895 8 7 5.6111 -1.5321 2.1333 9 6 6.2842 -2.1344 3.1336 10 8 5.6795 -2.5906 4.0848 11 6 7.7555 -2.2413 3.0740 12 6 8.4499 -1.7112 1.9799 13 6 9.8079 -1.8125 1.9176 14 6 10.5135 -2.4417 2.9622 15 6 11.9199 -2.5434 2.9054 16 1 12.4244 -2.5260 1.9506 17 6 12.6622 -2.6672 4.0885 18 7 12.1233 -2.3458 5.2345 19 14 14.4217 -3.2916 4.0263 20 1 15.3548 -2.1376 3.9717 21 1 14.7036 -4.0991 5.2403 22 1 14.6053 -4.1343 2.8175 23 6 9.8109 -2.9686 4.0638 24 6 8.4525 -2.8671 4.1146 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6765 1.9564 0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9563 -0.8900 32 1 1.6054 -1.7198 1.2953 33 1 1.7516 -0.1583 2.1370 34 1 3.7326 -1.7944 2.9488 35 1 6.0934 -1.1692 1.3738 36 1 7.9085 -1.2249 1.1820 37 1 10.3423 -1.4072 1.0712 38 1 12.6366 -2.4318 6.0530 39 1 10.3477 -3.4514 4.8670 40 1 7.9129 -3.2704 4.9588 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270204793.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:29 Heat of formation + Delta-G solvation = -44.812511 kcal Electronic energy + Delta-G solvation = -21871.148917 eV Core-core repulsion = 18457.935308 eV Total energy + Delta-G solvation = -3413.213609 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.21271 -38.88384 -37.23354 -35.90027 -34.80489 -33.98026 -31.61726 -30.08602 -29.49762 -27.92597 -27.27164 -25.81422 -22.38794 -21.61639 -20.98661 -20.47957 -19.62764 -17.78005 -17.58034 -17.19926 -16.10517 -15.86790 -15.34247 -15.00832 -14.45860 -14.12025 -14.09758 -14.05015 -13.72513 -13.30982 -12.82745 -12.61951 -12.46413 -12.28932 -12.14987 -11.97780 -11.51696 -11.39578 -11.27517 -11.15535 -11.06588 -10.91084 -10.85679 -10.66715 -10.15338 -9.98827 -9.61270 -9.39542 -9.26670 -8.09658 -7.77342 -7.62050 -7.09005 -4.67099 2.07691 2.16514 2.53708 2.86719 2.92358 2.97187 2.98783 3.69135 3.75089 4.21722 4.48245 4.50135 4.68391 4.81320 5.06496 5.24979 5.32718 5.41102 5.49353 5.49484 5.69405 5.74498 5.78283 5.92350 5.93772 6.15351 6.20985 6.29348 6.73804 6.77096 6.90498 6.98817 7.03251 7.06378 7.37040 7.53610 7.69287 7.80491 7.97467 8.07008 8.14993 8.35567 8.55899 8.67670 8.91906 9.82670 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.044987 B = 0.002617 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.259494 B =10697.558040 C =11130.013371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.155 4.155 4 C -0.127 4.127 5 C 0.507 3.493 6 O -0.543 6.543 7 N -0.521 5.521 8 N -0.538 5.538 9 C 0.574 3.426 10 O -0.575 6.575 11 C -0.281 4.281 12 C -0.047 4.047 13 C -0.232 4.232 14 C 0.129 3.871 15 C -0.437 4.437 16 H 0.086 0.914 17 C 0.073 3.927 18 N -0.765 5.765 19 Si 0.914 3.086 20 H -0.267 1.267 21 H -0.272 1.272 22 H -0.257 1.257 23 C -0.183 4.183 24 C -0.031 4.031 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.428 0.572 35 H 0.428 0.572 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.288 0.712 39 H 0.122 0.878 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.832 2.666 -5.234 15.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 C -0.212 4.212 4 C -0.169 4.169 5 C 0.293 3.707 6 O -0.420 6.420 7 N -0.266 5.266 8 N -0.289 5.289 9 C 0.370 3.630 10 O -0.456 6.456 11 C -0.287 4.287 12 C -0.066 4.066 13 C -0.251 4.251 14 C 0.126 3.874 15 C -0.464 4.464 16 H 0.104 0.896 17 C -0.150 4.150 18 N -0.388 5.388 19 Si 0.737 3.263 20 H -0.192 1.192 21 H -0.196 1.196 22 H -0.180 1.180 23 C -0.202 4.202 24 C -0.050 4.050 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.269 0.731 35 H 0.271 0.729 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.140 0.860 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.777 2.703 -4.974 14.895 hybrid contribution 0.753 -0.165 0.154 0.786 sum -13.024 2.538 -4.820 14.118 Atomic orbital electron populations 1.21864 0.94824 1.01778 1.02045 1.20864 0.95062 0.96980 0.96963 1.21980 1.03351 0.94868 1.01049 1.21711 0.90225 1.03468 1.01461 1.20942 0.90212 0.77873 0.81653 1.90686 1.70037 1.48071 1.33164 1.44906 0.96910 1.59964 1.24860 1.45181 0.93914 1.63216 1.26544 1.18863 0.88184 0.75879 0.80103 1.90651 1.70162 1.50804 1.33952 1.18587 0.88188 1.20001 1.01888 1.20396 0.94703 0.96538 0.95000 1.20679 0.93347 1.08853 1.02250 1.17814 0.93287 0.85895 0.90439 1.19886 0.91782 1.40816 0.93937 0.89553 1.26144 1.01679 0.92383 0.94744 1.69745 1.38887 1.30407 0.99758 0.86185 0.80692 0.79848 0.79528 1.19178 1.19648 1.18025 1.21001 0.92209 1.05581 1.01399 1.20426 0.94168 0.95127 0.95306 0.92583 0.92320 0.92617 0.90236 0.93307 0.90557 0.92916 0.88498 0.88492 0.73104 0.72891 0.89118 0.88215 0.90026 0.86007 0.87982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.19 37.15 0.34 -0.64 16 2 C -0.08 -0.71 2.57 -90.62 -0.23 -0.94 16 3 C -0.16 -1.52 8.93 37.16 0.33 -1.19 16 4 C -0.13 -1.10 5.17 -27.89 -0.14 -1.25 16 5 C 0.51 6.64 7.66 -10.99 -0.08 6.56 16 6 O -0.54 -8.77 13.80 5.55 0.08 -8.69 16 7 N -0.52 -7.54 6.26 31.22 0.20 -7.34 16 8 N -0.54 -9.48 6.21 30.48 0.19 -9.29 16 9 C 0.57 11.99 7.88 -12.42 -0.10 11.89 16 10 O -0.57 -13.05 16.16 5.28 0.09 -12.97 16 11 C -0.28 -6.30 5.89 -104.73 -0.62 -6.92 16 12 C -0.05 -1.01 9.47 -39.61 -0.38 -1.38 16 13 C -0.23 -5.31 9.73 -39.27 -0.38 -5.69 16 14 C 0.13 3.22 5.57 -106.80 -0.60 2.63 16 15 C -0.44 -10.64 9.04 -37.75 -0.34 -10.98 16 16 H 0.09 1.99 7.91 -52.49 -0.42 1.57 16 17 C 0.07 1.67 5.13 -17.31 -0.09 1.58 16 18 N -0.77 -18.29 10.97 55.56 0.61 -17.68 16 19 Si 0.91 17.01 29.60 -169.99 -5.03 11.98 16 20 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 21 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 22 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 23 C -0.18 -4.55 8.63 -39.27 -0.34 -4.89 16 24 C -0.03 -0.73 9.52 -39.61 -0.38 -1.11 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.81 7.96 -51.93 -0.41 0.40 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.95 5.95 -51.93 -0.31 0.64 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.43 5.56 8.00 -182.59 -1.46 4.10 16 35 H 0.43 7.33 6.00 -182.59 -1.10 6.23 16 36 H 0.09 1.65 6.37 -52.49 -0.33 1.32 16 37 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 38 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 39 H 0.12 3.09 6.17 -52.48 -0.32 2.77 16 40 H 0.10 2.37 7.63 -52.49 -0.40 1.97 16 LS Contribution 338.07 15.07 5.09 5.09 Total: -1.00 -28.77 338.07 -9.05 -37.82 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -7.27 Total: 13.40 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -3.00 Total: -12.32 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.99 Total: -34.32 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: 0.16 Total: -21.66 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -5.03 Total: 11.98 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.77 -9.05 -37.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270204793.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.995 kcal (2) G-P(sol) polarization free energy of solvation -28.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds