Wall clock time and date at job start Tue Mar 31 2020 06:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.46905 * 2 1 4 4 C 1.53003 * 109.47437 * 119.99853 * 2 1 3 5 5 C 1.50689 * 109.47502 * 175.00227 * 4 2 1 6 6 O 1.21285 * 120.00103 * 0.02562 * 5 4 2 7 7 N 1.34772 * 120.00308 * 179.97438 * 5 4 2 8 8 N 1.40103 * 120.00531 * 179.97438 * 7 5 4 9 9 C 1.34772 * 120.00531 * 180.02562 * 8 7 5 10 10 O 1.21592 * 119.99603 * 0.02562 * 9 8 7 11 11 C 1.47641 * 120.00551 * 179.97438 * 9 8 7 12 12 C 1.40013 * 119.89141 * 0.27073 * 11 9 8 13 13 C 1.36315 * 120.10881 * 180.27788 * 12 11 9 14 14 C 1.40893 * 119.88481 * 359.45202 * 13 12 11 15 15 C 1.41114 * 120.09748 * 180.29801 * 14 13 12 16 16 H 1.08000 * 120.00330 * 335.06249 * 15 14 13 17 17 C 1.40223 * 119.99644 * 155.06801 * 15 14 13 18 18 N 1.30656 * 120.00207 * 342.19907 * 17 15 14 19 19 Si 1.86803 * 120.00199 * 162.20506 * 17 15 14 20 20 H 1.48503 * 109.47047 * 94.65856 * 19 17 15 21 21 H 1.48504 * 109.47089 * 214.65560 * 19 17 15 22 22 H 1.48498 * 109.46765 * 334.65988 * 19 17 15 23 23 C 1.40884 * 119.79739 * 0.28068 * 14 13 12 24 24 C 1.36315 * 119.88972 * 359.97438 * 23 14 13 25 25 H 1.09007 * 109.47370 * 299.99950 * 1 2 3 26 26 H 1.09004 * 109.47449 * 60.00257 * 1 2 3 27 27 H 1.09005 * 109.47052 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47262 * 239.99715 * 2 1 3 29 29 H 1.08999 * 109.47393 * 59.99795 * 3 2 1 30 30 H 1.09001 * 109.47177 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47113 * 299.99811 * 3 2 1 32 32 H 1.09005 * 109.47146 * 54.99643 * 4 2 1 33 33 H 1.09000 * 109.46846 * 295.00557 * 4 2 1 34 34 H 0.97006 * 119.99890 * 359.97438 * 7 5 4 35 35 H 0.97006 * 119.99578 * 359.97438 * 8 7 5 36 36 H 1.07997 * 119.94892 * 0.02562 * 12 11 9 37 37 H 1.07993 * 120.05993 * 179.72594 * 13 12 11 38 38 H 0.96994 * 120.00294 * 179.97438 * 18 17 15 39 39 H 1.08003 * 120.05494 * 180.02562 * 23 14 13 40 40 H 1.07999 * 119.94612 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5418 -0.8293 1.1890 6 8 4.1450 -0.3739 0.2404 7 7 4.2149 -1.4311 2.1895 8 7 5.6111 -1.5321 2.1333 9 6 6.2842 -2.1344 3.1336 10 8 5.6795 -2.5906 4.0848 11 6 7.7555 -2.2413 3.0740 12 6 8.4499 -1.7112 1.9799 13 6 9.8079 -1.8125 1.9176 14 6 10.5135 -2.4417 2.9622 15 6 11.9199 -2.5434 2.9054 16 1 12.4244 -2.5260 1.9506 17 6 12.6622 -2.6672 4.0885 18 7 12.1233 -2.3458 5.2345 19 14 14.4217 -3.2916 4.0263 20 1 15.3548 -2.1376 3.9717 21 1 14.7036 -4.0991 5.2403 22 1 14.6053 -4.1343 2.8175 23 6 9.8109 -2.9686 4.0638 24 6 8.4525 -2.8671 4.1146 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6765 1.9564 0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9563 -0.8900 32 1 1.6054 -1.7198 1.2953 33 1 1.7516 -0.1583 2.1370 34 1 3.7326 -1.7944 2.9488 35 1 6.0934 -1.1692 1.3738 36 1 7.9085 -1.2249 1.1820 37 1 10.3423 -1.4072 1.0712 38 1 12.6366 -2.4318 6.0530 39 1 10.3477 -3.4514 4.8670 40 1 7.9129 -3.2704 4.9588 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270204793.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:28 Heat of formation + Delta-G solvation = -61.832622 kcal Electronic energy + Delta-G solvation = -21871.886965 eV Core-core repulsion = 18457.935308 eV Total energy + Delta-G solvation = -3413.951657 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.48636 -40.36506 -38.95144 -36.86327 -36.03250 -35.74458 -33.05758 -31.83501 -31.17296 -28.92287 -27.92023 -27.49274 -24.03562 -23.00122 -22.53840 -21.80372 -20.69566 -19.46107 -18.95938 -18.63955 -17.51539 -16.96678 -16.85418 -16.22722 -15.86683 -15.77434 -15.49849 -15.09696 -14.93589 -14.65486 -14.50661 -14.04543 -13.72269 -13.43072 -13.28899 -13.04352 -12.84203 -12.79190 -12.70957 -12.42834 -12.35198 -12.01785 -11.83158 -11.76860 -11.55476 -11.40375 -11.19443 -11.13830 -10.84075 -9.65120 -9.59527 -9.28460 -8.82342 -6.51572 0.33720 0.89689 1.12190 1.34980 1.40228 1.49613 1.55351 2.04880 2.15739 2.73091 3.09375 3.64846 3.65905 3.88212 4.03473 4.15548 4.25702 4.37222 4.38713 4.67414 4.71708 4.75650 4.88407 4.94482 4.97841 5.07729 5.13147 5.15073 5.20831 5.32476 5.46856 5.53076 5.54127 5.66881 5.68875 5.75284 5.96705 6.03639 6.16506 6.51978 6.58567 6.73093 6.84307 6.92830 7.41842 8.12640 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.044987 B = 0.002617 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.259494 B =10697.558040 C =11130.013371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 C -0.155 4.155 4 C -0.120 4.120 5 C 0.507 3.493 6 O -0.574 6.574 7 N -0.520 5.520 8 N -0.532 5.532 9 C 0.577 3.423 10 O -0.596 6.596 11 C -0.290 4.290 12 C -0.039 4.039 13 C -0.245 4.245 14 C 0.102 3.898 15 C -0.465 4.465 16 H 0.093 0.907 17 C 0.034 3.966 18 N -0.798 5.798 19 Si 0.989 3.011 20 H -0.259 1.259 21 H -0.265 1.265 22 H -0.254 1.254 23 C -0.201 4.201 24 C -0.040 4.040 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.435 0.565 35 H 0.431 0.569 36 H 0.124 0.876 37 H 0.115 0.885 38 H 0.297 0.703 39 H 0.108 0.892 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.078 2.910 -5.891 16.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.099 4.099 3 C -0.212 4.212 4 C -0.160 4.160 5 C 0.296 3.704 6 O -0.452 6.452 7 N -0.268 5.268 8 N -0.279 5.279 9 C 0.372 3.628 10 O -0.478 6.478 11 C -0.295 4.295 12 C -0.058 4.058 13 C -0.264 4.264 14 C 0.099 3.901 15 C -0.492 4.492 16 H 0.111 0.889 17 C -0.186 4.186 18 N -0.421 5.421 19 Si 0.809 3.191 20 H -0.184 1.184 21 H -0.190 1.190 22 H -0.177 1.177 23 C -0.221 4.221 24 C -0.060 4.060 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.278 0.722 35 H 0.274 0.726 36 H 0.141 0.859 37 H 0.133 0.867 38 H 0.108 0.892 39 H 0.126 0.874 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.060 2.965 -5.654 16.357 hybrid contribution 1.001 -0.168 0.304 1.059 sum -14.059 2.797 -5.350 15.301 Atomic orbital electron populations 1.21814 0.92623 1.02760 1.02727 1.20873 0.96752 0.95955 0.96324 1.21960 1.01298 0.96038 1.01946 1.21853 0.86297 1.05512 1.02389 1.21912 0.91805 0.76263 0.80423 1.90685 1.71056 1.49114 1.34322 1.45200 0.94980 1.60705 1.25895 1.44864 0.95986 1.61697 1.25403 1.18493 0.87673 0.76164 0.80487 1.90633 1.70421 1.51871 1.34916 1.18816 0.89566 1.19465 1.01697 1.20656 0.94337 0.95555 0.95262 1.20920 0.94163 1.08942 1.02382 1.18164 0.94193 0.86626 0.91143 1.20193 0.91974 1.42087 0.94947 0.88900 1.27036 1.05879 0.91772 0.93890 1.69787 1.40827 1.30868 1.00632 0.85073 0.75131 0.79311 0.79614 1.18352 1.18973 1.17740 1.20949 0.92683 1.06780 1.01672 1.20508 0.93992 0.95574 0.95933 0.91468 0.92133 0.91501 0.91979 0.92100 0.93628 0.92422 0.85728 0.86002 0.72185 0.72556 0.85850 0.86676 0.89158 0.87374 0.88190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.19 71.98 0.66 -0.76 16 2 C -0.08 -1.23 2.57 -10.80 -0.03 -1.26 16 3 C -0.16 -2.81 8.93 71.98 0.64 -2.17 16 4 C -0.12 -1.71 5.17 29.85 0.15 -1.55 16 5 C 0.51 12.37 7.66 87.65 0.67 13.04 16 6 O -0.57 -18.01 13.80 -3.05 -0.04 -18.06 16 7 N -0.52 -14.17 6.26 -173.54 -1.09 -15.25 16 8 N -0.53 -18.11 6.21 -175.73 -1.09 -19.20 16 9 C 0.58 23.83 7.88 86.73 0.68 24.52 16 10 O -0.60 -26.83 16.16 -4.01 -0.06 -26.90 16 11 C -0.29 -13.05 5.89 -19.93 -0.12 -13.17 16 12 C -0.04 -1.65 9.47 22.25 0.21 -1.44 16 13 C -0.24 -11.24 9.73 22.47 0.22 -11.02 16 14 C 0.10 5.22 5.57 -21.28 -0.12 5.11 16 15 C -0.47 -23.01 9.04 23.46 0.21 -22.80 16 16 H 0.09 4.31 7.91 -2.91 -0.02 4.28 16 17 C 0.03 1.56 5.13 85.35 0.44 2.00 16 18 N -0.80 -38.95 10.97 21.87 0.24 -38.71 16 19 Si 0.99 34.63 29.60 68.60 2.03 36.66 16 20 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 21 H -0.27 -8.93 7.11 99.48 0.71 -8.22 16 22 H -0.25 -8.70 7.11 99.48 0.71 -7.99 16 23 C -0.20 -10.43 8.63 22.47 0.19 -10.24 16 24 C -0.04 -1.99 9.52 22.25 0.21 -1.78 16 25 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 26 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 27 H 0.07 0.54 8.14 -2.38 -0.02 0.53 16 28 H 0.06 1.18 7.96 -2.39 -0.02 1.16 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.04 1.11 5.95 -2.39 -0.01 1.10 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.44 10.45 8.00 -213.31 -1.71 8.75 16 35 H 0.43 14.20 6.00 -213.31 -1.28 12.92 16 36 H 0.12 4.29 6.37 -2.91 -0.02 4.27 16 37 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 38 H 0.30 12.94 8.29 -92.71 -0.77 12.17 16 39 H 0.11 5.78 6.17 -2.91 -0.02 5.76 16 40 H 0.10 4.82 7.63 -2.91 -0.02 4.80 16 Total: -1.00 -63.49 338.07 2.11 -61.38 By element: Atomic # 1 Polarization: 43.52 SS G_CDS: -1.91 Total: 41.61 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: 4.04 Total: -21.53 kcal Atomic # 7 Polarization: -71.23 SS G_CDS: -1.94 Total: -73.17 kcal Atomic # 8 Polarization: -44.85 SS G_CDS: -0.11 Total: -44.95 kcal Atomic # 14 Polarization: 34.63 SS G_CDS: 2.03 Total: 36.66 kcal Total: -63.49 2.11 -61.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270204793.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.452 kcal (2) G-P(sol) polarization free energy of solvation -63.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds