Wall clock time and date at job start Tue Mar 31 2020 06:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47202 * 2 1 4 4 N 1.46505 * 109.47200 * 179.97438 * 3 2 1 5 5 C 1.34767 * 120.00209 * 179.97438 * 4 3 2 6 6 O 1.21291 * 120.00172 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.00415 * 179.97438 * 5 4 3 8 8 N 1.46492 * 109.47433 * 179.97438 * 7 5 4 9 9 C 1.34777 * 120.00403 * 180.02562 * 8 7 5 10 10 O 1.21592 * 119.99740 * 0.02562 * 9 8 7 11 11 C 1.47639 * 120.00339 * 180.02562 * 9 8 7 12 12 C 1.40007 * 119.89573 * 0.24611 * 11 9 8 13 13 C 1.36318 * 120.10468 * 180.25591 * 12 11 9 14 14 C 1.40884 * 119.89177 * 359.47662 * 13 12 11 15 15 C 1.41116 * 120.10368 * 180.29746 * 14 13 12 16 16 H 1.07997 * 120.00134 * 154.53831 * 15 14 13 17 17 C 1.40227 * 119.99714 * 334.53632 * 15 14 13 18 18 N 1.30644 * 120.00033 * 343.04996 * 17 15 14 19 19 Si 1.86799 * 119.99848 * 163.05218 * 17 15 14 20 20 H 1.48501 * 109.47314 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47265 * 119.99809 * 19 17 15 22 22 H 1.48498 * 109.47305 * 239.99792 * 19 17 15 23 23 C 1.40889 * 119.79628 * 0.27580 * 14 13 12 24 24 C 1.36316 * 119.88883 * 359.97438 * 23 14 13 25 25 H 1.09003 * 109.46932 * 59.99869 * 1 2 3 26 26 H 1.08998 * 109.47243 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46777 * 300.00279 * 1 2 3 28 28 H 1.09006 * 109.47098 * 239.99447 * 2 1 3 29 29 H 1.09003 * 109.46932 * 120.00130 * 2 1 3 30 30 H 1.09000 * 109.47483 * 60.00152 * 3 2 1 31 31 H 1.08998 * 109.47194 * 299.99436 * 3 2 1 32 32 H 0.96998 * 119.99945 * 359.97438 * 4 3 2 33 33 H 1.09000 * 109.46601 * 59.99887 * 7 5 4 34 34 H 1.08994 * 109.47120 * 300.00566 * 7 5 4 35 35 H 0.97005 * 120.00342 * 359.97438 * 8 7 5 36 36 H 1.08000 * 119.95276 * 0.03420 * 12 11 9 37 37 H 1.08007 * 120.05277 * 179.74755 * 13 12 11 38 38 H 0.97005 * 119.99903 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.05358 * 180.02562 * 23 14 13 40 40 H 1.08002 * 119.94674 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1789 2.6096 0.0002 6 8 3.5726 3.6600 -0.0011 7 6 5.6860 2.6096 0.0014 8 7 6.1743 3.9907 0.0001 9 6 7.4994 4.2371 0.0003 10 8 8.2895 3.3129 0.0012 11 6 7.9915 5.6290 -0.0005 12 6 7.0798 6.6916 0.0037 13 6 7.5295 7.9784 -0.0023 14 6 8.9141 8.2383 -0.0015 15 6 9.3846 9.5687 -0.0014 16 1 10.3605 9.7964 0.4012 17 6 8.5848 10.5952 -0.5240 18 7 7.5732 10.3052 -1.2982 19 14 8.9659 12.3772 -0.1133 20 1 10.1535 12.4371 0.7763 21 1 9.2466 13.1247 -1.3653 22 1 7.8004 12.9865 0.5762 23 6 9.8278 7.1658 -0.0005 24 6 9.3686 5.8823 0.0003 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.9900 0.6024 0.0013 33 1 6.0499 2.0950 -0.8879 34 1 6.0486 2.0965 0.8920 35 1 5.5440 4.7281 -0.0017 36 1 6.0185 6.4914 0.0081 37 1 6.8254 8.7974 -0.0031 38 1 7.0197 11.0153 -1.6594 39 1 10.8901 7.3603 0.0005 40 1 10.0681 5.0595 0.0007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270229675.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:14 Heat of formation + Delta-G solvation = -73.565244 kcal Electronic energy + Delta-G solvation = -21610.903273 eV Core-core repulsion = 18196.442852 eV Total energy + Delta-G solvation = -3414.460421 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.08269 -38.81064 -37.06964 -36.11921 -33.92654 -33.83719 -32.96169 -30.39102 -29.41689 -28.32594 -26.24172 -25.13291 -22.11412 -21.84558 -20.97282 -20.53830 -19.66541 -17.70812 -17.47161 -16.54687 -16.24867 -16.01611 -15.47661 -15.30366 -15.05503 -14.16240 -14.05133 -13.92551 -13.44497 -13.20584 -13.05818 -12.95686 -12.66720 -12.47124 -12.26745 -12.04178 -11.87208 -11.56544 -11.35941 -11.30500 -11.25104 -10.92608 -10.62136 -10.08239 -10.00494 -9.52909 -9.37163 -9.33212 -9.03128 -8.68380 -7.68374 -7.51062 -6.99871 -4.57683 2.24020 2.44298 2.80224 2.92676 2.97588 3.03034 3.07466 3.76556 3.86933 3.88191 4.40378 4.55049 4.57677 4.58817 4.82310 5.20179 5.22176 5.36658 5.37402 5.39829 5.59377 5.60989 5.70180 5.78724 6.03545 6.13019 6.16718 6.34339 6.79000 6.82802 6.85980 7.06236 7.16352 7.22737 7.47191 7.68007 7.82525 7.89614 7.97341 8.10123 8.24231 8.43624 8.66070 8.78356 9.03615 9.92179 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025243 B = 0.002719 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.964449 B =10293.729168 C =11304.869150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.117 3.883 4 N -0.732 5.732 5 C 0.508 3.492 6 O -0.532 6.532 7 C 0.106 3.894 8 N -0.732 5.732 9 C 0.575 3.425 10 O -0.578 6.578 11 C -0.283 4.283 12 C -0.061 4.061 13 C -0.177 4.177 14 C 0.129 3.871 15 C -0.442 4.442 16 H 0.085 0.915 17 C 0.073 3.927 18 N -0.771 5.771 19 Si 0.914 3.086 20 H -0.257 1.257 21 H -0.272 1.272 22 H -0.269 1.269 23 C -0.238 4.238 24 C -0.021 4.021 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.403 0.597 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.409 0.591 36 H 0.092 0.908 37 H 0.121 0.879 38 H 0.286 0.714 39 H 0.098 0.902 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.151 -13.709 1.618 17.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.006 4.006 4 N -0.385 5.385 5 C 0.295 3.705 6 O -0.408 6.408 7 C -0.022 4.022 8 N -0.389 5.389 9 C 0.370 3.630 10 O -0.461 6.461 11 C -0.288 4.288 12 C -0.081 4.081 13 C -0.196 4.196 14 C 0.125 3.875 15 C -0.470 4.470 16 H 0.103 0.897 17 C -0.148 4.148 18 N -0.395 5.395 19 Si 0.737 3.263 20 H -0.181 1.181 21 H -0.197 1.197 22 H -0.194 1.194 23 C -0.258 4.258 24 C -0.041 4.041 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.237 0.763 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.248 0.752 36 H 0.110 0.890 37 H 0.138 0.862 38 H 0.097 0.903 39 H 0.117 0.883 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.257 -13.476 1.464 17.620 hybrid contribution -0.122 0.664 0.007 0.675 sum -11.379 -12.812 1.471 17.198 Atomic orbital electron populations 1.21681 0.94496 1.02171 1.02443 1.21742 0.97058 0.95776 1.02821 1.21427 0.79316 0.97215 1.02683 1.45915 1.07469 1.08663 1.76438 1.20787 0.90330 0.83819 0.75609 1.90723 1.70074 1.31198 1.48780 1.20883 0.89510 0.87603 1.04229 1.45699 1.08320 1.06551 1.78312 1.18593 0.80347 0.89980 0.74044 1.90627 1.55512 1.46681 1.53229 1.18825 0.94253 0.89851 1.25867 1.20542 0.96452 0.93300 0.97767 1.20983 0.96103 0.95032 1.07509 1.17814 0.91726 0.92720 0.85215 1.19876 1.02658 0.91435 1.32994 0.89666 1.26111 0.93730 1.02446 0.92533 1.69751 1.13369 1.36147 1.20198 0.86163 0.79967 0.80668 0.79483 1.18080 1.19695 1.19400 1.20715 0.98097 0.92232 1.14758 1.20354 0.93421 0.96049 0.94249 0.92281 0.92158 0.92296 0.91211 0.91220 0.91351 0.91331 0.76281 0.88933 0.88929 0.75179 0.89047 0.86164 0.90266 0.88338 0.88048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.16 0.37 -0.38 16 2 C -0.14 -0.73 6.05 -26.73 -0.16 -0.89 16 3 C 0.12 0.96 5.67 -4.04 -0.02 0.94 16 4 N -0.73 -6.53 5.56 -60.29 -0.33 -6.86 16 5 C 0.51 6.60 7.90 -10.99 -0.09 6.52 16 6 O -0.53 -8.97 15.67 5.55 0.09 -8.88 16 7 C 0.11 1.45 6.15 -5.20 -0.03 1.42 16 8 N -0.73 -13.23 5.48 -62.50 -0.34 -13.57 16 9 C 0.57 12.50 7.76 -12.42 -0.10 12.41 16 10 O -0.58 -13.55 16.32 5.29 0.09 -13.47 16 11 C -0.28 -6.67 5.89 -104.73 -0.62 -7.29 16 12 C -0.06 -1.43 9.47 -39.61 -0.38 -1.81 16 13 C -0.18 -4.48 8.63 -39.27 -0.34 -4.82 16 14 C 0.13 3.34 5.57 -106.80 -0.59 2.74 16 15 C -0.44 -11.15 9.05 -37.74 -0.34 -11.50 16 16 H 0.09 2.05 7.90 -52.49 -0.41 1.64 16 17 C 0.07 1.73 5.15 -17.31 -0.09 1.64 16 18 N -0.77 -18.92 10.95 55.56 0.61 -18.31 16 19 Si 0.91 17.57 29.59 -169.99 -5.03 12.54 16 20 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 21 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 22 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 23 C -0.24 -5.85 9.73 -39.27 -0.38 -6.23 16 24 C -0.02 -0.51 9.52 -39.61 -0.38 -0.89 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.40 2.38 8.47 -40.82 -0.35 2.03 16 33 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.41 7.48 5.44 -40.82 -0.22 7.26 16 36 H 0.09 1.91 6.37 -52.49 -0.33 1.58 16 37 H 0.12 3.09 6.18 -52.48 -0.32 2.77 16 38 H 0.29 6.30 8.29 -40.82 -0.34 5.96 16 39 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 40 H 0.10 2.31 7.63 -52.49 -0.40 1.91 16 LS Contribution 342.98 15.07 5.17 5.17 Total: -1.00 -30.88 342.98 -8.31 -39.19 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -5.40 Total: 12.33 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -3.15 Total: -8.15 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: -0.07 Total: -38.74 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: 0.17 Total: -22.35 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.88 -8.31 -39.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270229675.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.376 kcal (2) G-P(sol) polarization free energy of solvation -30.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds