Wall clock time and date at job start Tue Mar 31 2020 06:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47202 * 2 1 4 4 N 1.46505 * 109.47200 * 179.97438 * 3 2 1 5 5 C 1.34767 * 120.00209 * 179.97438 * 4 3 2 6 6 O 1.21291 * 120.00172 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.00415 * 179.97438 * 5 4 3 8 8 N 1.46492 * 109.47433 * 179.97438 * 7 5 4 9 9 C 1.34777 * 120.00403 * 180.02562 * 8 7 5 10 10 O 1.21592 * 119.99740 * 0.02562 * 9 8 7 11 11 C 1.47639 * 120.00339 * 180.02562 * 9 8 7 12 12 C 1.40007 * 119.89573 * 0.24611 * 11 9 8 13 13 C 1.36318 * 120.10468 * 180.25591 * 12 11 9 14 14 C 1.40884 * 119.89177 * 359.47662 * 13 12 11 15 15 C 1.41116 * 120.10368 * 180.29746 * 14 13 12 16 16 H 1.07997 * 120.00134 * 154.53831 * 15 14 13 17 17 C 1.40227 * 119.99714 * 334.53632 * 15 14 13 18 18 N 1.30644 * 120.00033 * 343.04996 * 17 15 14 19 19 Si 1.86799 * 119.99848 * 163.05218 * 17 15 14 20 20 H 1.48501 * 109.47314 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47265 * 119.99809 * 19 17 15 22 22 H 1.48498 * 109.47305 * 239.99792 * 19 17 15 23 23 C 1.40889 * 119.79628 * 0.27580 * 14 13 12 24 24 C 1.36316 * 119.88883 * 359.97438 * 23 14 13 25 25 H 1.09003 * 109.46932 * 59.99869 * 1 2 3 26 26 H 1.08998 * 109.47243 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46777 * 300.00279 * 1 2 3 28 28 H 1.09006 * 109.47098 * 239.99447 * 2 1 3 29 29 H 1.09003 * 109.46932 * 120.00130 * 2 1 3 30 30 H 1.09000 * 109.47483 * 60.00152 * 3 2 1 31 31 H 1.08998 * 109.47194 * 299.99436 * 3 2 1 32 32 H 0.96998 * 119.99945 * 359.97438 * 4 3 2 33 33 H 1.09000 * 109.46601 * 59.99887 * 7 5 4 34 34 H 1.08994 * 109.47120 * 300.00566 * 7 5 4 35 35 H 0.97005 * 120.00342 * 359.97438 * 8 7 5 36 36 H 1.08000 * 119.95276 * 0.03420 * 12 11 9 37 37 H 1.08007 * 120.05277 * 179.74755 * 13 12 11 38 38 H 0.97005 * 119.99903 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.05358 * 180.02562 * 23 14 13 40 40 H 1.08002 * 119.94674 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1789 2.6096 0.0002 6 8 3.5726 3.6600 -0.0011 7 6 5.6860 2.6096 0.0014 8 7 6.1743 3.9907 0.0001 9 6 7.4994 4.2371 0.0003 10 8 8.2895 3.3129 0.0012 11 6 7.9915 5.6290 -0.0005 12 6 7.0798 6.6916 0.0037 13 6 7.5295 7.9784 -0.0023 14 6 8.9141 8.2383 -0.0015 15 6 9.3846 9.5687 -0.0014 16 1 10.3605 9.7964 0.4012 17 6 8.5848 10.5952 -0.5240 18 7 7.5732 10.3052 -1.2982 19 14 8.9659 12.3772 -0.1133 20 1 10.1535 12.4371 0.7763 21 1 9.2466 13.1247 -1.3653 22 1 7.8004 12.9865 0.5762 23 6 9.8278 7.1658 -0.0005 24 6 9.3686 5.8823 0.0003 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.9900 0.6024 0.0013 33 1 6.0499 2.0950 -0.8879 34 1 6.0486 2.0965 0.8920 35 1 5.5440 4.7281 -0.0017 36 1 6.0185 6.4914 0.0081 37 1 6.8254 8.7974 -0.0031 38 1 7.0197 11.0153 -1.6594 39 1 10.8901 7.3603 0.0005 40 1 10.0681 5.0595 0.0007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270229675.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:13 Heat of formation + Delta-G solvation = -93.962721 kcal Electronic energy + Delta-G solvation = -21611.787774 eV Core-core repulsion = 18196.442852 eV Total energy + Delta-G solvation = -3415.344922 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.28828 -40.36688 -38.87298 -36.92473 -35.67166 -35.40986 -33.67591 -32.16859 -31.31070 -29.56722 -27.63865 -26.30487 -23.64717 -22.81592 -22.58945 -21.61493 -21.30468 -19.37896 -19.07221 -17.69657 -17.31901 -17.14036 -17.11486 -16.46202 -16.21595 -15.74595 -15.50280 -15.34479 -15.02066 -14.60777 -14.30307 -13.92565 -13.87463 -13.80971 -13.62910 -13.32158 -13.18010 -12.95861 -12.85669 -12.62352 -12.37607 -12.04983 -11.75995 -11.75900 -11.38613 -11.17396 -11.12931 -10.79813 -10.29100 -10.11925 -9.58471 -9.41483 -8.79218 -6.49095 0.41532 1.14617 1.38107 1.40808 1.42363 1.55753 1.81742 2.09631 2.17423 2.52575 2.77464 3.61382 3.68073 3.91375 4.06700 4.18090 4.30188 4.32590 4.34599 4.43316 4.45991 4.65882 4.74171 4.85629 4.92666 5.02648 5.14735 5.15183 5.24259 5.26886 5.28796 5.39023 5.44165 5.58531 5.80786 5.92928 5.99389 6.21598 6.38382 6.53571 6.60162 6.76469 6.87860 7.06439 7.35159 8.16220 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025243 B = 0.002719 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.964449 B =10293.729168 C =11304.869150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C 0.115 3.885 4 N -0.710 5.710 5 C 0.512 3.488 6 O -0.576 6.576 7 C 0.102 3.898 8 N -0.724 5.724 9 C 0.578 3.422 10 O -0.596 6.596 11 C -0.294 4.294 12 C -0.057 4.057 13 C -0.198 4.198 14 C 0.101 3.899 15 C -0.471 4.471 16 H 0.088 0.912 17 C 0.034 3.966 18 N -0.801 5.801 19 Si 0.990 3.010 20 H -0.255 1.255 21 H -0.263 1.263 22 H -0.262 1.262 23 C -0.250 4.250 24 C -0.029 4.029 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.420 0.580 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.409 0.591 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.296 0.704 39 H 0.109 0.891 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.832 -14.624 1.774 18.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.009 4.009 4 N -0.363 5.363 5 C 0.298 3.702 6 O -0.456 6.456 7 C -0.025 4.025 8 N -0.379 5.379 9 C 0.371 3.629 10 O -0.481 6.481 11 C -0.298 4.298 12 C -0.076 4.076 13 C -0.217 4.217 14 C 0.098 3.902 15 C -0.498 4.498 16 H 0.106 0.894 17 C -0.184 4.184 18 N -0.424 5.424 19 Si 0.810 3.190 20 H -0.178 1.178 21 H -0.188 1.188 22 H -0.186 1.186 23 C -0.269 4.269 24 C -0.048 4.048 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.258 0.742 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.247 0.753 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.108 0.892 39 H 0.127 0.873 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.967 -14.474 1.617 18.850 hybrid contribution 0.014 0.809 -0.065 0.812 sum -11.953 -13.665 1.552 18.221 Atomic orbital electron populations 1.21701 0.94226 1.02851 1.02164 1.21696 0.97162 0.93647 1.03915 1.21535 0.78496 0.99170 1.01676 1.45779 1.07949 1.08278 1.74276 1.20649 0.89936 0.84223 0.75398 1.90714 1.70628 1.32920 1.51295 1.21147 0.90195 0.85236 1.05889 1.45593 1.06992 1.08654 1.76652 1.18275 0.81444 0.88905 0.74229 1.90611 1.56285 1.46806 1.54349 1.19133 0.94297 0.91212 1.25199 1.20710 0.97602 0.92639 0.96620 1.20991 0.95960 0.95560 1.09214 1.18166 0.92347 0.93691 0.86032 1.20151 1.03497 0.92028 1.34116 0.89369 1.26993 0.93164 1.06627 0.91660 1.69781 1.14085 1.38067 1.20512 0.85031 0.79865 0.74735 0.79405 1.17794 1.18799 1.18638 1.20884 0.98588 0.92355 1.15105 1.20531 0.94067 0.96086 0.94148 0.92640 0.90970 0.92605 0.90114 0.90063 0.92384 0.92452 0.74189 0.87288 0.87125 0.75283 0.86984 0.87143 0.89249 0.87328 0.87183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 71.98 0.71 -0.53 16 2 C -0.13 -1.05 6.05 30.59 0.19 -0.86 16 3 C 0.11 1.71 5.67 86.38 0.49 2.20 16 4 N -0.71 -11.15 5.56 -463.05 -2.57 -13.73 16 5 C 0.51 12.53 7.90 87.66 0.69 13.23 16 6 O -0.58 -19.15 15.67 -3.06 -0.05 -19.20 16 7 C 0.10 2.61 6.15 85.64 0.53 3.13 16 8 N -0.72 -25.37 5.48 -469.91 -2.57 -27.95 16 9 C 0.58 24.66 7.76 86.73 0.67 25.33 16 10 O -0.60 -27.29 16.32 -4.00 -0.07 -27.36 16 11 C -0.29 -13.86 5.89 -19.93 -0.12 -13.98 16 12 C -0.06 -2.67 9.47 22.25 0.21 -2.46 16 13 C -0.20 -10.27 8.63 22.47 0.19 -10.08 16 14 C 0.10 5.37 5.57 -21.28 -0.12 5.25 16 15 C -0.47 -24.17 9.05 23.46 0.21 -23.96 16 16 H 0.09 4.31 7.90 -2.91 -0.02 4.29 16 17 C 0.03 1.63 5.15 85.35 0.44 2.07 16 18 N -0.80 -39.63 10.95 21.87 0.24 -39.39 16 19 Si 0.99 35.61 29.59 68.60 2.03 37.64 16 20 H -0.25 -8.96 7.11 99.48 0.71 -8.25 16 21 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 22 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 23 C -0.25 -12.49 9.73 22.47 0.22 -12.28 16 24 C -0.03 -1.41 9.52 22.25 0.21 -1.20 16 25 H 0.05 0.49 8.14 -2.39 -0.02 0.48 16 26 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.42 3.69 8.47 -92.71 -0.79 2.90 16 33 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.41 14.66 5.44 -92.70 -0.50 14.16 16 36 H 0.11 4.69 6.37 -2.91 -0.02 4.67 16 37 H 0.11 5.86 6.18 -2.91 -0.02 5.84 16 38 H 0.30 13.04 8.29 -92.70 -0.77 12.27 16 39 H 0.11 5.03 8.06 -2.91 -0.02 5.01 16 40 H 0.11 5.03 7.63 -2.91 -0.02 5.01 16 Total: -1.00 -66.94 342.98 1.33 -65.61 By element: Atomic # 1 Polarization: 38.71 SS G_CDS: -0.22 Total: 38.49 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 4.53 Total: -14.13 kcal Atomic # 7 Polarization: -76.16 SS G_CDS: -4.91 Total: -81.06 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: -0.11 Total: -46.55 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.64 kcal Total: -66.94 1.33 -65.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270229675.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.349 kcal (2) G-P(sol) polarization free energy of solvation -66.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds