Wall clock time and date at job start Tue Mar 31 2020 06:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46835 * 2 1 4 4 N 1.46497 * 109.47131 * 120.00131 * 2 1 3 5 5 C 1.46507 * 119.99722 * 230.32753 * 4 2 1 6 6 C 1.50700 * 109.46623 * 269.99664 * 5 4 2 7 7 N 1.34780 * 119.99760 * 179.97438 * 6 5 4 8 8 O 1.21278 * 120.00232 * 0.02562 * 6 5 4 9 9 C 1.34770 * 120.00248 * 50.32563 * 4 2 1 10 10 O 1.21588 * 120.00274 * 185.62238 * 9 4 2 11 11 C 1.47642 * 120.00319 * 5.62211 * 9 4 2 12 12 C 1.40015 * 119.89623 * 248.24553 * 11 9 4 13 13 C 1.36323 * 120.10280 * 180.25478 * 12 11 9 14 14 C 1.40886 * 119.89038 * 359.46989 * 13 12 11 15 15 C 1.41109 * 120.10161 * 180.30144 * 14 13 12 16 16 H 1.08000 * 120.00388 * 172.75407 * 15 14 13 17 17 C 1.40231 * 120.00061 * 352.75814 * 15 14 13 18 18 N 1.30646 * 119.99851 * 284.21979 * 17 15 14 19 19 Si 1.86801 * 120.00279 * 104.21451 * 17 15 14 20 20 H 1.48500 * 109.47075 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46847 * 120.00011 * 19 17 15 22 22 H 1.48497 * 109.47453 * 240.00215 * 19 17 15 23 23 C 1.40888 * 119.79616 * 0.27534 * 14 13 12 24 24 C 1.36315 * 119.89075 * 0.02562 * 23 14 13 25 25 H 1.08997 * 109.47310 * 38.87492 * 1 2 3 26 26 H 1.09003 * 109.46997 * 158.87920 * 1 2 3 27 27 H 1.09000 * 109.47086 * 278.88006 * 1 2 3 28 28 H 1.09004 * 109.46798 * 240.00188 * 2 1 3 29 29 H 1.09002 * 109.47208 * 92.54296 * 3 2 1 30 30 H 1.09009 * 109.46850 * 212.53874 * 3 2 1 31 31 H 1.09002 * 109.47379 * 332.53523 * 3 2 1 32 32 H 1.08993 * 109.47104 * 29.99601 * 5 4 2 33 33 H 1.09000 * 109.46791 * 150.00081 * 5 4 2 34 34 H 0.97000 * 119.99946 * 0.02562 * 7 6 5 35 35 H 0.96996 * 119.99878 * 179.97438 * 7 6 5 36 36 H 1.07991 * 119.94656 * 0.02562 * 12 11 9 37 37 H 1.07991 * 120.04965 * 179.74814 * 13 12 11 38 38 H 0.96999 * 120.00514 * 179.97438 * 18 17 15 39 39 H 1.08000 * 120.04957 * 180.02562 * 23 14 13 40 40 H 1.08003 * 119.94560 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 3.0262 -0.0551 2.0487 6 6 4.4028 -0.4406 1.5717 7 7 5.4931 0.0299 2.2091 8 8 4.5295 -1.1735 0.6138 9 6 1.5405 -1.9105 1.5123 10 8 1.8679 -2.4397 2.5568 11 6 0.6193 -2.6042 0.5903 12 6 -0.7175 -2.8015 0.9569 13 6 -1.5704 -3.4461 0.1111 14 6 -1.1075 -3.9041 -1.1382 15 6 -1.9881 -4.5663 -2.0199 16 1 -1.6661 -4.8125 -3.0209 17 6 -3.2814 -4.9046 -1.5963 18 7 -3.4611 -5.9188 -0.7925 19 14 -4.7472 -3.9051 -2.1810 20 1 -4.2790 -2.8181 -3.0779 21 1 -5.6845 -4.7877 -2.9212 22 1 -5.4434 -3.3154 -1.0094 23 6 0.2372 -3.6985 -1.5048 24 6 1.0842 -3.0583 -0.6498 25 1 -0.3634 0.8000 -0.6450 26 1 -0.3633 -0.9587 -0.3703 27 1 -0.3633 0.1586 1.0154 28 1 1.8933 -0.5138 -0.8901 29 1 2.2040 1.7699 1.0267 30 1 2.9779 1.4963 -0.5528 31 1 1.3014 2.0890 -0.4740 32 1 2.9142 1.0278 1.9982 33 1 2.8923 -0.3867 3.0784 34 1 5.3917 0.6164 2.9751 35 1 6.3791 -0.2185 1.9024 36 1 -1.0725 -2.4457 1.9127 37 1 -2.6003 -3.6014 0.3964 38 1 -4.3556 -6.1526 -0.4992 39 1 0.5963 -4.0476 -2.4617 40 1 2.1153 -2.9006 -0.9298 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270251653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:10 Heat of formation + Delta-G solvation = -43.528352 kcal Electronic energy + Delta-G solvation = -23525.548912 eV Core-core repulsion = 20112.390988 eV Total energy + Delta-G solvation = -3413.157924 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.13631 -38.63740 -36.99325 -35.96953 -34.17361 -33.63047 -31.45279 -30.57620 -29.48437 -28.39381 -26.18519 -25.48948 -22.20330 -21.44036 -20.98354 -20.41167 -18.56678 -17.65794 -17.18842 -17.05019 -16.63302 -15.51005 -15.37333 -14.82487 -14.72940 -14.22629 -13.89786 -13.74795 -13.61958 -12.92131 -12.67285 -12.53332 -12.48992 -12.22914 -11.98931 -11.76812 -11.38177 -11.30252 -11.17358 -11.06427 -10.85297 -10.63466 -10.33616 -10.19970 -10.02712 -9.68525 -9.39896 -8.95597 -8.81051 -8.18411 -7.98036 -7.55949 -7.34332 -4.35803 2.61033 2.73626 2.77724 2.95463 3.08117 3.15601 3.37511 3.52291 3.63639 3.80720 4.01484 4.86842 5.03226 5.16085 5.24586 5.27078 5.50476 5.54647 5.88152 5.92756 6.03050 6.08400 6.22346 6.32065 6.37412 6.55552 6.57900 6.72950 6.82801 6.89288 7.03831 7.12369 7.28203 7.33603 7.56397 7.75820 7.93295 7.96145 8.06595 8.12109 8.32910 8.45783 8.69503 8.92491 9.00560 9.30043 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028362 B = 0.004252 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.004454 B = 6584.112181 C = 6870.761812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.149 3.851 3 C -0.169 4.169 4 N -0.598 5.598 5 C 0.080 3.920 6 C 0.497 3.503 7 N -0.861 5.861 8 O -0.526 6.526 9 C 0.597 3.403 10 O -0.563 6.563 11 C -0.306 4.306 12 C -0.025 4.025 13 C -0.244 4.244 14 C 0.115 3.885 15 C -0.478 4.478 16 H 0.095 0.905 17 C 0.139 3.861 18 N -0.678 5.678 19 Si 0.869 3.131 20 H -0.244 1.244 21 H -0.268 1.268 22 H -0.262 1.262 23 C -0.249 4.249 24 C -0.030 4.030 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.398 0.602 35 H 0.398 0.602 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.295 0.705 39 H 0.091 0.909 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.696 13.711 3.053 15.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.046 3.954 3 C -0.226 4.226 4 N -0.332 5.332 5 C -0.047 4.047 6 C 0.281 3.719 7 N -0.427 5.427 8 O -0.400 6.400 9 C 0.390 3.610 10 O -0.442 6.442 11 C -0.309 4.309 12 C -0.044 4.044 13 C -0.263 4.263 14 C 0.113 3.887 15 C -0.498 4.498 16 H 0.113 0.887 17 C -0.100 4.100 18 N -0.292 5.292 19 Si 0.688 3.312 20 H -0.166 1.166 21 H -0.193 1.193 22 H -0.186 1.186 23 C -0.268 4.268 24 C -0.049 4.049 25 H 0.073 0.927 26 H 0.115 0.885 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.226 0.774 35 H 0.228 0.772 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.642 12.707 3.103 14.245 hybrid contribution -0.215 0.514 0.152 0.577 sum 5.427 13.221 3.255 14.657 Atomic orbital electron populations 1.22585 0.93940 1.04686 1.01763 1.20905 0.94962 0.91598 0.87887 1.22412 1.01818 0.96183 1.02154 1.47885 1.40118 1.18687 1.26474 1.21393 0.85663 1.00190 0.97450 1.21524 0.87619 0.79775 0.83017 1.43885 1.08913 1.54036 1.35838 1.90759 1.86947 1.35148 1.27190 1.18818 0.78453 0.78663 0.85037 1.90628 1.60734 1.65887 1.26927 1.18295 0.94743 1.19370 0.98518 1.20016 0.91909 0.96153 0.96329 1.20290 0.98178 1.10398 0.97427 1.17290 0.90999 0.89707 0.90730 1.19535 0.96278 1.33165 1.00828 0.88717 1.26332 1.02323 0.91403 0.89961 1.70170 1.27001 1.16545 1.15512 0.86966 0.80076 0.82881 0.81300 1.16648 1.19337 1.18650 1.20295 0.94090 1.11917 1.00495 1.20108 0.96933 0.95827 0.92004 0.92746 0.88468 0.92946 0.90674 0.91602 0.92431 0.91100 0.86981 0.87304 0.77385 0.77200 0.89833 0.89386 0.89269 0.89042 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 8.05 37.16 0.30 -2.50 16 2 C 0.15 2.37 3.09 -67.93 -0.21 2.16 16 3 C -0.17 -1.92 9.06 37.16 0.34 -1.58 16 4 N -0.60 -10.62 2.19 -168.65 -0.37 -10.99 16 5 C 0.08 1.10 5.43 -5.19 -0.03 1.07 16 6 C 0.50 7.26 8.17 -10.98 -0.09 7.17 16 7 N -0.86 -7.91 8.87 31.22 0.28 -7.63 16 8 O -0.53 -10.45 17.27 5.56 0.10 -10.36 16 9 C 0.60 13.44 6.75 -12.42 -0.08 13.35 16 10 O -0.56 -14.21 16.66 5.29 0.09 -14.12 16 11 C -0.31 -7.25 2.95 -104.73 -0.31 -7.56 16 12 C -0.03 -0.60 8.13 -39.61 -0.32 -0.92 16 13 C -0.24 -6.12 9.33 -39.27 -0.37 -6.48 16 14 C 0.11 2.95 5.74 -106.80 -0.61 2.34 16 15 C -0.48 -11.96 8.87 -37.74 -0.33 -12.29 16 16 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 17 C 0.14 3.19 3.67 -17.31 -0.06 3.12 16 18 N -0.68 -15.68 13.92 55.56 0.77 -14.91 16 19 Si 0.87 16.49 29.69 -169.99 -5.05 11.44 16 20 H -0.24 -4.73 7.11 56.52 0.40 -4.33 16 21 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 22 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 23 C -0.25 -6.18 9.73 -39.27 -0.38 -6.56 16 24 C -0.03 -0.72 8.25 -39.61 -0.33 -1.04 16 25 H 0.05 0.74 7.55 -51.93 -0.39 0.35 16 26 H 0.10 1.92 4.62 -51.93 -0.24 1.68 16 27 H 0.05 0.85 8.12 -51.93 -0.42 0.42 16 28 H 0.08 1.34 7.43 -51.93 -0.39 0.96 16 29 H 0.07 0.64 5.14 -51.93 -0.27 0.37 16 30 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 31 H 0.07 0.70 7.44 -51.93 -0.39 0.32 16 32 H 0.11 1.08 5.02 -51.93 -0.26 0.82 16 33 H 0.11 1.50 7.35 -51.93 -0.38 1.12 16 34 H 0.40 2.17 8.83 -40.82 -0.36 1.81 16 35 H 0.40 3.31 8.93 -40.82 -0.36 2.95 16 36 H 0.08 1.89 8.06 -52.49 -0.42 1.47 16 37 H 0.09 2.18 7.08 -52.49 -0.37 1.81 16 38 H 0.30 5.88 8.29 -40.82 -0.34 5.54 16 39 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 40 H 0.09 2.05 8.06 -52.48 -0.42 1.63 16 LS Contribution 333.31 15.07 5.02 5.02 Total: -1.00 -32.73 333.31 -6.73 -39.47 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -5.08 Total: 11.81 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -2.49 Total: -9.73 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.68 Total: -33.53 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: 0.18 Total: -24.48 kcal Atomic # 14 Polarization: 16.49 SS G_CDS: -5.05 Total: 11.44 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.73 -6.73 -39.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270251653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.063 kcal (2) G-P(sol) polarization free energy of solvation -32.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds