Wall clock time and date at job start Tue Mar 31 2020 06:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46835 * 2 1 4 4 N 1.46497 * 109.47131 * 120.00131 * 2 1 3 5 5 C 1.46507 * 119.99722 * 230.32753 * 4 2 1 6 6 C 1.50700 * 109.46623 * 269.99664 * 5 4 2 7 7 N 1.34780 * 119.99760 * 179.97438 * 6 5 4 8 8 O 1.21278 * 120.00232 * 0.02562 * 6 5 4 9 9 C 1.34770 * 120.00248 * 50.32563 * 4 2 1 10 10 O 1.21588 * 120.00274 * 185.62238 * 9 4 2 11 11 C 1.47642 * 120.00319 * 5.62211 * 9 4 2 12 12 C 1.40015 * 119.89623 * 248.24553 * 11 9 4 13 13 C 1.36323 * 120.10280 * 180.25478 * 12 11 9 14 14 C 1.40886 * 119.89038 * 359.46989 * 13 12 11 15 15 C 1.41109 * 120.10161 * 180.30144 * 14 13 12 16 16 H 1.08000 * 120.00388 * 172.75407 * 15 14 13 17 17 C 1.40231 * 120.00061 * 352.75814 * 15 14 13 18 18 N 1.30646 * 119.99851 * 284.21979 * 17 15 14 19 19 Si 1.86801 * 120.00279 * 104.21451 * 17 15 14 20 20 H 1.48500 * 109.47075 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46847 * 120.00011 * 19 17 15 22 22 H 1.48497 * 109.47453 * 240.00215 * 19 17 15 23 23 C 1.40888 * 119.79616 * 0.27534 * 14 13 12 24 24 C 1.36315 * 119.89075 * 0.02562 * 23 14 13 25 25 H 1.08997 * 109.47310 * 38.87492 * 1 2 3 26 26 H 1.09003 * 109.46997 * 158.87920 * 1 2 3 27 27 H 1.09000 * 109.47086 * 278.88006 * 1 2 3 28 28 H 1.09004 * 109.46798 * 240.00188 * 2 1 3 29 29 H 1.09002 * 109.47208 * 92.54296 * 3 2 1 30 30 H 1.09009 * 109.46850 * 212.53874 * 3 2 1 31 31 H 1.09002 * 109.47379 * 332.53523 * 3 2 1 32 32 H 1.08993 * 109.47104 * 29.99601 * 5 4 2 33 33 H 1.09000 * 109.46791 * 150.00081 * 5 4 2 34 34 H 0.97000 * 119.99946 * 0.02562 * 7 6 5 35 35 H 0.96996 * 119.99878 * 179.97438 * 7 6 5 36 36 H 1.07991 * 119.94656 * 0.02562 * 12 11 9 37 37 H 1.07991 * 120.04965 * 179.74814 * 13 12 11 38 38 H 0.96999 * 120.00514 * 179.97438 * 18 17 15 39 39 H 1.08000 * 120.04957 * 180.02562 * 23 14 13 40 40 H 1.08003 * 119.94560 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 3.0262 -0.0551 2.0487 6 6 4.4028 -0.4406 1.5717 7 7 5.4931 0.0299 2.2091 8 8 4.5295 -1.1735 0.6138 9 6 1.5405 -1.9105 1.5123 10 8 1.8679 -2.4397 2.5568 11 6 0.6193 -2.6042 0.5903 12 6 -0.7175 -2.8015 0.9569 13 6 -1.5704 -3.4461 0.1111 14 6 -1.1075 -3.9041 -1.1382 15 6 -1.9881 -4.5663 -2.0199 16 1 -1.6661 -4.8125 -3.0209 17 6 -3.2814 -4.9046 -1.5963 18 7 -3.4611 -5.9188 -0.7925 19 14 -4.7472 -3.9051 -2.1810 20 1 -4.2790 -2.8181 -3.0779 21 1 -5.6845 -4.7877 -2.9212 22 1 -5.4434 -3.3154 -1.0094 23 6 0.2372 -3.6985 -1.5048 24 6 1.0842 -3.0583 -0.6498 25 1 -0.3634 0.8000 -0.6450 26 1 -0.3633 -0.9587 -0.3703 27 1 -0.3633 0.1586 1.0154 28 1 1.8933 -0.5138 -0.8901 29 1 2.2040 1.7699 1.0267 30 1 2.9779 1.4963 -0.5528 31 1 1.3014 2.0890 -0.4740 32 1 2.9142 1.0278 1.9982 33 1 2.8923 -0.3867 3.0784 34 1 5.3917 0.6164 2.9751 35 1 6.3791 -0.2185 1.9024 36 1 -1.0725 -2.4457 1.9127 37 1 -2.6003 -3.6014 0.3964 38 1 -4.3556 -6.1526 -0.4992 39 1 0.5963 -4.0476 -2.4617 40 1 2.1153 -2.9006 -0.9298 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270251653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:10 Heat of formation + Delta-G solvation = -66.883035 kcal Electronic energy + Delta-G solvation = -23526.561647 eV Core-core repulsion = 20112.390988 eV Total energy + Delta-G solvation = -3414.170659 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.57143 -40.06078 -38.79652 -37.45368 -35.96046 -34.68621 -32.78107 -32.30813 -31.40395 -29.76437 -27.40916 -27.19361 -23.87987 -22.87430 -22.69806 -21.86850 -19.99133 -19.49601 -18.51177 -18.18138 -17.93210 -17.05880 -16.93601 -16.27222 -16.17319 -15.90246 -15.52425 -15.23652 -14.88242 -14.51606 -14.33476 -14.19529 -13.90678 -13.68272 -13.43135 -13.22684 -13.15700 -12.79305 -12.61861 -12.29331 -12.24911 -12.14046 -11.98057 -11.64225 -11.31758 -11.28558 -10.72573 -10.66254 -10.61334 -9.83909 -9.59650 -9.49441 -9.15269 -6.27573 0.91957 1.17150 1.21071 1.40506 1.55081 1.61453 1.84243 2.00071 2.05875 2.24611 2.75796 3.58437 3.82416 3.93452 4.10058 4.11917 4.18797 4.37141 4.39817 4.45092 4.52801 4.81484 4.86931 4.88610 4.95426 5.00423 5.14164 5.17495 5.29680 5.37944 5.50671 5.63980 5.70655 5.89365 5.91718 5.99626 6.09037 6.18610 6.44928 6.46763 6.53918 6.76907 7.00362 7.29806 7.38284 7.62871 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028362 B = 0.004252 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.004454 B = 6584.112181 C = 6870.761812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.143 3.857 3 C -0.158 4.158 4 N -0.589 5.589 5 C 0.074 3.926 6 C 0.494 3.506 7 N -0.832 5.832 8 O -0.589 6.589 9 C 0.591 3.409 10 O -0.600 6.600 11 C -0.308 4.308 12 C -0.025 4.025 13 C -0.257 4.257 14 C 0.092 3.908 15 C -0.499 4.499 16 H 0.086 0.914 17 C 0.103 3.897 18 N -0.708 5.708 19 Si 0.946 3.054 20 H -0.252 1.252 21 H -0.247 1.247 22 H -0.255 1.255 23 C -0.269 4.269 24 C -0.028 4.028 25 H 0.082 0.918 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.163 0.837 33 H 0.112 0.888 34 H 0.420 0.580 35 H 0.406 0.594 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.313 0.687 39 H 0.092 0.908 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.219 16.497 3.699 17.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.041 3.959 3 C -0.215 4.215 4 N -0.320 5.320 5 C -0.052 4.052 6 C 0.278 3.722 7 N -0.398 5.398 8 O -0.468 6.468 9 C 0.383 3.617 10 O -0.482 6.482 11 C -0.312 4.312 12 C -0.044 4.044 13 C -0.276 4.276 14 C 0.090 3.910 15 C -0.519 4.519 16 H 0.104 0.896 17 C -0.135 4.135 18 N -0.324 5.324 19 Si 0.763 3.237 20 H -0.175 1.175 21 H -0.170 1.170 22 H -0.179 1.179 23 C -0.287 4.287 24 C -0.047 4.047 25 H 0.101 0.899 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.180 0.820 33 H 0.130 0.870 34 H 0.252 0.748 35 H 0.237 0.763 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.126 0.874 39 H 0.111 0.889 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.202 15.557 3.777 16.833 hybrid contribution 0.028 -0.362 -0.022 0.363 sum 5.230 15.195 3.755 16.503 Atomic orbital electron populations 1.22476 0.94235 1.03586 1.02136 1.21059 0.94758 0.94061 0.86069 1.22345 1.02413 0.92746 1.03967 1.47783 1.39972 1.17240 1.27030 1.21788 0.84177 1.02703 0.96520 1.21634 0.88885 0.79178 0.82458 1.43602 1.08016 1.52737 1.35398 1.90751 1.87778 1.38155 1.30124 1.18630 0.78617 0.80077 0.84353 1.90594 1.62299 1.67255 1.28096 1.18473 0.95033 1.19275 0.98383 1.20125 0.92055 0.95744 0.96465 1.20294 0.98299 1.11343 0.97671 1.17514 0.91424 0.90701 0.91371 1.19743 0.98039 1.33611 1.00482 0.89595 1.27100 1.04099 0.92125 0.90142 1.70043 1.28903 1.17525 1.15902 0.85785 0.76346 0.80807 0.80770 1.17472 1.17046 1.17893 1.20397 0.94352 1.12989 1.00981 1.20101 0.96630 0.95677 0.92301 0.89936 0.92340 0.92844 0.93420 0.89269 0.92057 0.88952 0.82039 0.87017 0.74781 0.76250 0.88817 0.89548 0.87405 0.88940 0.89657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.27 8.05 71.98 0.58 -4.69 16 2 C 0.14 4.37 3.09 44.99 0.14 4.51 16 3 C -0.16 -3.03 9.06 71.98 0.65 -2.37 16 4 N -0.59 -20.44 2.19 -805.74 -1.77 -22.21 16 5 C 0.07 1.84 5.43 85.63 0.47 2.31 16 6 C 0.49 13.60 8.17 87.66 0.72 14.32 16 7 N -0.83 -12.94 8.87 -173.53 -1.54 -14.48 16 8 O -0.59 -23.41 17.27 -3.02 -0.05 -23.46 16 9 C 0.59 26.93 6.75 86.73 0.59 27.52 16 10 O -0.60 -30.70 16.66 -3.99 -0.07 -30.77 16 11 C -0.31 -15.07 2.95 -19.93 -0.06 -15.13 16 12 C -0.03 -1.23 8.13 22.25 0.18 -1.05 16 13 C -0.26 -13.27 9.33 22.47 0.21 -13.06 16 14 C 0.09 4.91 5.74 -21.28 -0.12 4.79 16 15 C -0.50 -25.71 8.87 23.46 0.21 -25.50 16 16 H 0.09 4.43 8.06 -2.91 -0.02 4.41 16 17 C 0.10 4.73 3.67 85.35 0.31 5.04 16 18 N -0.71 -32.85 13.92 21.87 0.30 -32.54 16 19 Si 0.95 33.50 29.69 68.60 2.04 35.54 16 20 H -0.25 -9.18 7.11 99.48 0.71 -8.47 16 21 H -0.25 -7.86 7.11 99.48 0.71 -7.15 16 22 H -0.25 -8.69 7.11 99.48 0.71 -7.99 16 23 C -0.27 -13.99 9.73 22.47 0.22 -13.77 16 24 C -0.03 -1.42 8.25 22.25 0.18 -1.24 16 25 H 0.08 2.09 7.55 -2.39 -0.02 2.07 16 26 H 0.06 2.34 4.62 -2.39 -0.01 2.33 16 27 H 0.05 1.65 8.12 -2.39 -0.02 1.63 16 28 H 0.05 1.73 7.43 -2.38 -0.02 1.71 16 29 H 0.09 1.27 5.14 -2.39 -0.01 1.25 16 30 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.09 1.43 7.44 -2.39 -0.02 1.41 16 32 H 0.16 2.34 5.02 -2.39 -0.01 2.33 16 33 H 0.11 2.83 7.35 -2.39 -0.02 2.81 16 34 H 0.42 2.97 8.83 -92.71 -0.82 2.15 16 35 H 0.41 5.76 8.93 -92.71 -0.83 4.93 16 36 H 0.09 4.31 8.06 -2.92 -0.02 4.29 16 37 H 0.09 4.37 7.08 -2.92 -0.02 4.35 16 38 H 0.31 12.25 8.29 -92.71 -0.77 11.48 16 39 H 0.09 4.63 8.06 -2.91 -0.02 4.60 16 40 H 0.09 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -75.36 333.31 2.63 -72.73 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: -0.55 Total: 33.50 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: 4.27 Total: -18.32 kcal Atomic # 7 Polarization: -66.22 SS G_CDS: -3.00 Total: -69.23 kcal Atomic # 8 Polarization: -54.11 SS G_CDS: -0.12 Total: -54.23 kcal Atomic # 14 Polarization: 33.50 SS G_CDS: 2.04 Total: 35.54 kcal Total: -75.36 2.63 -72.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270251653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.851 kcal (2) G-P(sol) polarization free energy of solvation -75.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds